prot_H-elongata_contig73347.15022.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73347.15022.1
Unique Nameprot_H-elongata_contig73347.15022.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
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BLAST of mRNA_H-elongata_contig73347.15022.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.310e-33
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 0 
Query:    1 KSQRAVLVFSEVEGAHAALQANGRDILGSNCSIGLASSMPPLQEGLGRENVSDQPEVEGEPENNNSKMSPVAWIRSVLAQGMVYTRLFDEKLGVSQTAKVLVEKVQ 106
            ++QRAVLVF++V GA +ALQANGRDILG+NCS+ LASSMP L +GL R+NVSDQP   G  E     ++   WI+ + AQGMVYTRLFDEKLGVS TAK +  KVQ
Sbjct:   72 RTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRT--LTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQ 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73347.15022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI4.310e-3363.21RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73347contigH-elongata_contig73347:1759..3067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73347.15022.1mRNA_H-elongata_contig73347.15022.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73347 1759..3067 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73347.15022.1 ID=prot_H-elongata_contig73347.15022.1|Name=mRNA_H-elongata_contig73347.15022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
KSQRAVLVFSEVEGAHAALQANGRDILGSNCSIGLASSMPPLQEGLGREN
VSDQPEVEGEPENNNSKMSPVAWIRSVLAQGMVYTRLFDEKLGVSQTAKV
LVEKVQKFDETHNVSGTVTAAAMTAAEKTREVDTR*
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