mRNA_H-elongata_contig73347.15022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73347.15022.1
Unique NamemRNA_H-elongata_contig73347.15022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73347.15022.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.310e-33
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    1 KSQRAVLVFSEVEGAHAALQANGRDILGSNCSIGLASSMPPLQEGLGRENVSDQPEVEGEPENNNSKMSPVAWIRSVLAQGMVYTRLFDEKLGVSQTAKVLVEKVQ 318
            ++QRAVLVF++V GA +ALQANGRDILG+NCS+ LASSMP L +GL R+NVSDQP   G  E     ++   WI+ + AQGMVYTRLFDEKLGVS TAK +  KVQ
Sbjct:   72 RTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRT--LTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQ 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73347.15022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI4.310e-3363.21RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73347contigH-elongata_contig73347:1759..3067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_009520.1
Exons4
Model size408
Cds size408
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73347.15022.1prot_H-elongata_contig73347.15022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73347 1759..3067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.6512969-CDS-H-elongata_contig73347:1758..18541622931136.6512969-CDS-H-elongata_contig73347:1758..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 1759..1854 -
1691679713.5728087-CDS-H-elongata_contig73347:1758..18541691679713.5728087-CDS-H-elongata_contig73347:1758..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 1759..1854 -
1622931136.6706486-CDS-H-elongata_contig73347:2160..22881622931136.6706486-CDS-H-elongata_contig73347:2160..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 2161..2288 -
1691679713.58562-CDS-H-elongata_contig73347:2160..22881691679713.58562-CDS-H-elongata_contig73347:2160..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 2161..2288 -
1622931136.6860628-CDS-H-elongata_contig73347:2625..27491622931136.6860628-CDS-H-elongata_contig73347:2625..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 2626..2749 -
1691679713.597119-CDS-H-elongata_contig73347:2625..27491691679713.597119-CDS-H-elongata_contig73347:2625..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 2626..2749 -
1622931136.7038436-CDS-H-elongata_contig73347:3007..30671622931136.7038436-CDS-H-elongata_contig73347:3007..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 3008..3067 -
1691679713.6050525-CDS-H-elongata_contig73347:3007..30671691679713.6050525-CDS-H-elongata_contig73347:3007..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73347 3008..3067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73347.15022.1

>prot_H-elongata_contig73347.15022.1 ID=prot_H-elongata_contig73347.15022.1|Name=mRNA_H-elongata_contig73347.15022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
KSQRAVLVFSEVEGAHAALQANGRDILGSNCSIGLASSMPPLQEGLGREN
VSDQPEVEGEPENNNSKMSPVAWIRSVLAQGMVYTRLFDEKLGVSQTAKV
LVEKVQKFDETHNVSGTVTAAAMTAAEKTREVDTR*
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mRNA from alignment at H-elongata_contig73347:1759..3067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73347.15022.1 ID=mRNA_H-elongata_contig73347.15022.1|Name=mRNA_H-elongata_contig73347.15022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1309bp|location=Sequence derived from alignment at H-elongata_contig73347:1759..3067- (Himanthalia elongata Himel1 dioecious)
AAGTCGCAAAGGGCTGTGCTCGTCTTCTCTGAGGTGGAGGGTGCCCATGC
CGCTTTGCAGGTGACACACCGGCTCCCGGTAGGCTTTGAGAGCCCTCCTC
CCCCAGATATGAAGCTCTTTCTTTCTCTGCGTGACGCTGGACGTTTGTCA
AATAGAGTGTGTACGCGCAGGGACGTTTGTGCTTGTTCCGCAGAGTATAG
ATAAAATGAATGCCTCCGCAGAGGAGGGGGGAGGGTCCCATTTAGAATCC
CGTGTATTTACATAAATTATTTTCAATTGGCGCAACCTCCTCATATGACA
TACATCCCTTGTGCCCAGGCAAATGGGCGTGACATCCTGGGGTCGAACTG
CTCCATTGGGCTTGCGTCGTCGATGCCGCCCTTGCAAGAAGGCTTGGGAC
GTGAGAACGTCAGCGACCAGCCGGAGGTGGAGGGTGAGCCTGGTCGCAAT
TACGGTAGCGCCTAGGCTAGGCGGGAGGCGCCGTGCGTAGCCGAGACAGG
ACGTTTAGAAGAGTAGTGTTGAGCTTGGCGAGCACTCCCCATTAGATTTT
TTAGCGTACATTTATCTCCCTGCTGCATTATCGAGAGTTGACGGTAGCCT
ATTGGATGAGGGTGGCTTGGGGGAAATGCCATTTTATCGTAATATTAGAT
CAGTGAACTTGGTCGGCGTTCCTACTTGTAGAGAGACTGACGTCAATCGT
TTGTCGTGTCTTGTATCCCTGGTTCGCGCTTTATGTATGTGTCTTGTCTG
TGTGTGTGTCTGCGAGGCAGGAACGCCAGAAAACAACAACAGCAAGATGT
CGCCCGTCGCATGGATAAGGAGCGTCCTGGCTCAGGGCATGGTGTACACC
CGCCTCTTCGACGAGAAGCTTGGGGTCTCGCAGACGGCCAAGGTCCTCGT
GGAGAAGGTGATCGATCGCAGCTTGTTTCGTCTGCCTACCATTTTATGTA
ATTATTCCGCGTCTCCCAGTGGAGCTACTAATGCAATCAATCCCGCCGGC
CCCCTCGTGGCGTATCGTTCTCCGCGATGATCAACACCAGCACCGTATTT
CAACAGCAACAATTTCCATGTTTTTACCGATTGAAGTTGTACACCCTCTG
ACGTGGCATCATACGGAAGCTTAAAAATCACGCATTTTGCTCTGGGTCGG
GTAGGGTGGTAGGGTGGTGTGGTGCTAACGTGCGATGCAAACTGTTACCC
CTAACGTTATCAGGTGCAGAAGTTCGACGAGACCCATAATGTGAGCGGTA
CCGTGACAGCTGCCGCCATGACTGCCGCCGAGAAGACTCGTGAGGTCGAC
ACCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig73347:1759..3067-

>mRNA_H-elongata_contig73347.15022.1 ID=mRNA_H-elongata_contig73347.15022.1|Name=mRNA_H-elongata_contig73347.15022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig73347:1759..3067- (Himanthalia elongata Himel1 dioecious)
AAGTCGCAAAGGGCTGTGCTCGTCTTCTCTGAGGTGGAGGGTGCCCATGC
CGCTTTGCAGAAGTCGCAAAGGGCTGTGCTCGTCTTCTCTGAGGTGGAGG
GTGCCCATGCCGCTTTGCAGGCAAATGGGCGTGACATCCTGGGGTCGAAC
TGCTCCATTGGGCTTGCGTCGTCGATGCCGCCCTTGCAAGAAGGCTTGGG
ACGTGAGAACGTCAGCGACCAGCCGGAGGTGGAGGGTGAGCCTGGCAAAT
GGGCGTGACATCCTGGGGTCGAACTGCTCCATTGGGCTTGCGTCGTCGAT
GCCGCCCTTGCAAGAAGGCTTGGGACGTGAGAACGTCAGCGACCAGCCGG
AGGTGGAGGGTGAGCCTGAAAACAACAACAGCAAGATGTCGCCCGTCGCA
TGGATAAGGAGCGTCCTGGCTCAGGGCATGGTGTACACCCGCCTCTTCGA
CGAGAAGCTTGGGGTCTCGCAGACGGCCAAGGTCCTCGTGGAGAAGAAAA
CAACAACAGCAAGATGTCGCCCGTCGCATGGATAAGGAGCGTCCTGGCTC
AGGGCATGGTGTACACCCGCCTCTTCGACGAGAAGCTTGGGGTCTCGCAG
ACGGCCAAGGTCCTCGTGGAGAAGGTGCAGAAGTTCGACGAGACCCATAA
TGTGAGCGGTACCGTGACAGCTGCCGCCATGACTGCCGCCGAGAAGACTC
GTGAGGTCGACACCAGGTAAGTGCAGAAGTTCGACGAGACCCATAATGTG
AGCGGTACCGTGACAGCTGCCGCCATGACTGCCGCCGAGAAGACTCGTGA
GGTCGACACCAGGTAA
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