mRNA_H-elongata_contig119491.1502.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.380e-25 Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
VKWLA+VMS L+ RRQFL+FVTGTPRLPIGGF ALRPRLTVVKKEV G TPD+HLPSCSTC
Sbjct: 2260 VKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTC 2325
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.600e-23 Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 22 MSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
MS L+ RRQFL+FVTGTPRLPIGGF ALRPRLTVVKKEV G TPD+HLPSCSTC
Sbjct: 1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTC 59
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 7.930e-17 Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 10 LAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
L +V+S L+ A+RR FL FVTG+PRLP+GGFAAL+PRLTVV+K+ PD HLPSCSTC
Sbjct: 248 LVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTPR-----PDEHLPSCSTC 305
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A0L0HCH4_SPIPD (HECT-type E3 ubiquitin transferase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HCH4_SPIPD) HSP 1 Score: 79.0 bits (193), Expect = 1.360e-15 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
+K LA MS LNP +RR+FLQFVTG+P+LP+GGF AL P LTVV+K V + + PD +LPS TC
Sbjct: 2269 IKHLATFMSTLNPIQRREFLQFVTGSPKLPLGGFKALNPSLTVVRKNVEAGK--KPDDYLPSVMTC 2332
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A4P9ZF83_9ASCO (HECT-type E3 ubiquitin transferase n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZF83_9ASCO) HSP 1 Score: 77.8 bits (190), Expect = 3.460e-15 Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
+K L ++S + RRQFLQF+TG+PRLPIGGFAAL P+LT+VKK V S G D HLPS TC
Sbjct: 1300 IKHLLSIISDFSKVERRQFLQFLTGSPRLPIGGFAALNPKLTIVKKHVDS--GQKTDDHLPSVMTC 1363
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A183IQS5_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IQS5_9BILA) HSP 1 Score: 77.4 bits (189), Expect = 4.630e-15 Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPS 186
+ WLAK+M+G + +RRQFLQFVTG+PRLP+GG L P LTVV+K + S +PD+HLPS
Sbjct: 449 IMWLAKIMNGFDDEQRRQFLQFVTGSPRLPVGGLKNLSPPLTVVRKYIFSG---SPDSHLPS 507
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A1X7VUP3_AMPQE (E3 ubiquitin-protein ligase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VUP3_AMPQE) HSP 1 Score: 77.4 bits (189), Expect = 4.740e-15 Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
+++L +V+S + +RQF+QFVTG+PRLP+GGF AL P+LT+V+K VGSS+ +PD LPS TC
Sbjct: 1865 IQFLFRVLSSYSTTEQRQFIQFVTGSPRLPVGGFKALNPQLTIVRKAVGSSQ--SPDNFLPSVMTC 1928
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.850e-15 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
V+ L +V+S L+P RRQFL F TG+PRLP+GGF AL PRLT+V+K+ R +PDA LPS STC
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKPLPGR--SPDASLPSASTC 2089
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: UPI0018DA2F90 (E3 ubiquitin-protein ligase TRIP12-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018DA2F90) HSP 1 Score: 75.9 bits (185), Expect = 1.650e-14 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
VK+L ++M+ NP ++RQFLQFVTG+PRLP+GGF AL P LT+V+K +S PD LPS TC
Sbjct: 2227 VKFLFEIMASYNPQQQRQFLQFVTGSPRLPVGGFKALTPPLTIVRKTFETSEN--PDNFLPSVMTC 2290
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Match: A0A1D1UBX1_RAMVA (E3 ubiquitin-protein ligase n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UBX1_RAMVA) HSP 1 Score: 75.5 bits (184), Expect = 2.260e-14 Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 1 VKWLAKVMSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDAHLPSCSTC 198
++WL ++S N RR F+QFVTG+P+LP+GGF AL P TVVKK VG S+ PD LPS TC
Sbjct: 1886 IQWLFSILSKYNAEERRNFVQFVTGSPKLPVGGFKALNPPFTVVKKVVGESQ--KPDQFLPSVMTC 1949 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119491.1502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119491.1502.1 >prot_H-elongata_contig119491.1502.1 ID=prot_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp MSGLNPARRRQFLQFVTGTPRLPIGGFAALRPRLTVVKKEVGSSRGCTPDback to top mRNA from alignment at H-elongata_contig119491:1100..1297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119491.1502.1 ID=mRNA_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig119491:1100..1297+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119491:1100..1297+ >mRNA_H-elongata_contig119491.1502.1 ID=mRNA_H-elongata_contig119491.1502.1|Name=mRNA_H-elongata_contig119491.1502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig119491:1100..1297+ (Himanthalia elongata Himel1 dioecious)back to top |