mRNA_H-elongata_contig73329.15020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73329.15020.1
Unique NamemRNA_H-elongata_contig73329.15020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 2.470e-111
Identity = 200/284 (70.42%), Postives = 219/284 (77.11%), Query Frame = 1 
Query:    1 KFAGQECMERGVSLLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDITGVVGRVTELAVEVLSEDADDAGSLRPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLRCLVCAPSNVAVDGILEKLVAKG---------------------GGEDVRTNPCVRVVRMGHPARLLPQ 789
            +   QECMERGVSL+PLAV G+STGLYGRACVSV DPK RPLPAHR  AGD+VRLY SK GKG D E G S+I+GVVG+VTE  VEV+SEDADDAGSLR PLRLDVVASEATH+KLMLGLDALEKYP GGPAER+INVLFG EPPSA   + T P   + +  A+ +   LNDSQR AV FALATRDVALIHGPPGTGKTTTVVALV EAVARG RCLVCAPSNVAVDG+LEKLVA G                     GG+++   P  RVVRMGHPARLLPQ
Sbjct:   46 QLTAQECMERGVSLVPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQVRLYSSKGGKG-DVEGGISEISGVVGKVTEGTVEVISEDADDAGSLRAPLRLDVVASEATHKKLMLGLDALEKYPGGGPAERVINVLFGSEPPSAAAVAPTGPPAATLSSLALRS---LNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALVQEAVARGWRCLVCAPSNVAVDGMLEKLVAAGEXXXXXXXXXXXXXXXXXXXYGGKNIGGRP--RVVRMGHPARLLPQ 323
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A6H5JGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 3.820e-74
Identity = 147/222 (66.22%), Postives = 162/222 (72.97%), Query Frame = 1 
Query:  211 SDITGVVGRVTELAVEVLSEDADDAGSLRPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVPSTTTPAVGSG------------AGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLRCLVCAPSNVAVDGILEKLVA---KGGG--------------EDVRTNPCVRVVRMGHPARLLPQ 789
            S ++GVVG+VTE A+EV+SEDADDAGSLR PLRLDVV SEATH+KLMLGLDALEKYP GGPAER+INVLFG+EPPSA    +T  A  +             A  +  A   LNDSQR AV FALATRDVALIHGPPGTGKTTTVVAL+ EAVARG +CLVCAPSNVAVDGILEKLVA   +GGG              + V   P  RVVRMGHPARLLPQ
Sbjct:   12 SQLSGVVGKVTEGAIEVISEDADDAGSLRAPLRLDVVVSEATHKKLMLGLDALEKYPGGGPAERVINVLFGLEPPSAATVRSTPAAKDTATXXXXXXXXXXXATISSPALRSLNDSQREAVAFALATRDVALIHGPPGTGKTTTVVALIREAVARGWKCLVCAPSNVAVDGILEKLVAVEDEGGGGXXXXXXXAEGYGGKKVGGRP--RVVRMGHPARLLPQ 231
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA)

HSP 1 Score: 228 bits (582), Expect = 6.520e-65
Identity = 147/280 (52.50%), Postives = 184/280 (65.71%), Query Frame = 1 
Query:    1 KFAGQECMERGVSLLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDITGVVGRVTELAVEVLSED-ADDAGSLRPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVP----STTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRV-------------VRMGHPARLLP 786
            + +  EC  +G+S+L L VK ++TGL+GR  V+V D K R L +HR S+GDEV L  +K G  GD    PS + GVVGRVT+  +EV+S+D   DA +L+ PLRLDVVASEATH+KL+ GL  LEK+ SGG A+++I+VLFG  PPS + P    S++ P +   A    +  S LNDSQR+A+ FAL+T DVALIHGPPGTGKTTTVV LVL+AVARG R LV APSNVAVD +LEKLVA                            VR+GHP RLLP
Sbjct:   31 QLSAAECQAKGLSVLSLVVKEVTTGLFGRCVVTVGDTKGRALVSHRLSSGDEVTLRSTKGG--GDV---PS-VAGVVGRVTDDRIEVISDDDRGDAEALKAPLRLDVVASEATHKKLVQGLANLEKH-SGGIADKVISVLFGQSPPSLLAPGSSSSSSAPQLPDTAPPYFN--SNLNDSQRSAIAFALSTDDVALIHGPPGTGKTTTVVELVLQAVARGWRVLVAAPSNVAVDNVLEKLVAAQDDSAXXXXXXXXXXXXXXXXXXRALPVRLGHPVRLLP 301
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A4D9CVU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVU4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.410e-49
Identity = 130/295 (44.07%), Postives = 164/295 (55.59%), Query Frame = 1 
Query:   13 QECMERGVSLLPLAVKGMSTGLYGRACVSV----ADPKDRPLPAHRFSAGDEVRLY---GSKRGKGGDEEEGPSDITGVVGRVTELAVEVLS--EDADD--------AGSLRPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLF------GVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLR-CLVCAPSNVAVDGILEKLVAKGGGE---DVRTNPC----------VRVVRMGHPARLLP 786
            QEC E+GVSLL L + G+STGLY R C+S+    A  KD  LPAH F AGDEV L    GS R   G    G   ITGV+ R T   V++++  ED D          G     LRLD++++E+TH K++  ++ +  YP+ GPA R+I++ F      G  PP      T  P  G     A+     LND+QR AV   ++T DVALIHGPPGTGKTT VV L+L+AV R  R  LVCAPSNVAVD I E+L             T+P           VR+VR+GHPARL P
Sbjct:  491 QECQEKGVSLLHLNIAGISTGLYARKCISLGASTAVRKDGSLPAHGFGAGDEVVLRSMKGSSRKGSGAGATGNERITGVIARTTGGRVDMVASTEDLDSDLLEGWAAGGPGSGHLRLDMLSNESTHEKMLQAVEDVCNYPADGPAARIIDMCFSGRACLGTLPPVPKTAPTQLPPDGPSYSGAV-----LNDAQRAAVTLGMSTEDVALIHGPPGTGKTTAVVELILQAVRRQRRRVLVCAPSNVAVDNIAERLALAPPPPLPPSSSTDPTPSRTELSKRPVRIVRLGHPARLAP 780
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: W7TRN4_9STRA (Dna-binding protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.780e-48
Identity = 128/296 (43.24%), Postives = 163/296 (55.07%), Query Frame = 1 
Query:   13 QECMERGVSLLPLAVKGMSTGLYGRACVSV----ADPKDRPLPAHRFSAGDEVRLY---GSKRGKGGDEEEGPSDITGVVGRVTELAVEVLS--EDADD--------AGSLRPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVE------PPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLR-CLVCAPSNVAVDGILEKLVAKGGGE--------------DVRTNPCVRVVRMGHPARLLP 786
            QEC E+GVSLL L + G+STGLY R C+S+    A  KD  LPAH F AGDEV L    GS     G    G   ITGV+ R T   V++++  ED D          G     LRLD++++E+TH K++  ++ +  YP+ GPA R+I++ FG        PP      T  P  G     A+     LND+QR AV   ++T DVALIHGPPGTGKTT VV L+L+AV R  R  LVCAPSNVAVD I E+L                     ++   P VR+VR+GHPARL P
Sbjct:   48 QECQEKGVSLLHLNIAGISTGLYARKCISLGASTAVRKDGSLPAHGFGAGDEVVLRSMKGSSSKGSGAGATGSERITGVIARTTGGRVDMVASTEDLDSDLLEGWAAGGPGSGHLRLDMLSNESTHEKMLQAVEDVCNYPADGPAARIIDMCFGGRACLGTLPPVPKTAPTQLPPDGPSYSGAV-----LNDAQRAAVTLGMSTEDVALIHGPPGTGKTTAVVELILQAVRRQQRRVLVCAPSNVAVDNIAERLALAPXXXXXXXXXXXXXXXRTELSKRP-VRIVRLGHPARLAP 337
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A0Q3LUE7_AMAAE (DNA-binding protein SMUBP-2 n=1 Tax=Amazona aestiva TaxID=12930 RepID=A0A0Q3LUE7_AMAAE)

HSP 1 Score: 165 bits (418), Expect = 9.010e-45
Identity = 113/262 (43.13%), Postives = 150/262 (57.25%), Query Frame = 1 
Query:   13 QECMERGVSLLPLAVKGMSTGLYGRACVSVADPKDRP---LPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDITGVVGRVTELAVEVLSEDADDAGSL--RPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHPARLL 783
            +E   RGV LL L      TGLYGR  V+    K  P   LP++ F  GD   LY +         +G +  TG+V RVT  AV V  ED+ D  SL      RL  +A++ T+ +L   L+AL++Y  GGPA  LI+VLF    P A   S T P             + L++SQR AV F+LA RD+A+IHGPPGTGKTTT+V ++L+AV +GL+ L CAPSNVAVD ++E+L  +           VR++R+GHPARLL
Sbjct:   38 KELQRRGVCLLKLHAASQRTGLYGRLLVTFQPRKHDPDAELPSNSFGPGDIAGLYDAA-------SQGDALCTGIVTRVTSRAVTVAFEDSQDTLSLDXERSYRLLKLANDVTYNRLKKALNALKQY-RGGPASDLIDVLFFSAEPRAF--SETKPL--------QLYNNSLDESQREAVSFSLAQRDLAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGRS----------VRILRLGHPARLL 271
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A7L0M4D6_9PSIT (SMBP2 protein (Fragment) n=7 Tax=Psittaciformes TaxID=9223 RepID=A0A7L0M4D6_9PSIT)

HSP 1 Score: 165 bits (418), Expect = 8.430e-43
Identity = 113/262 (43.13%), Postives = 150/262 (57.25%), Query Frame = 1 
Query:   13 QECMERGVSLLPLAVKGMSTGLYGRACVSVADPKDRP---LPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDITGVVGRVTELAVEVLSEDADDAGSL--RPPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARGLRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHPARLL 783
            +E   RGV LL L      TGLYGR  V+    K  P   LP++ F  GD   LY +         +G +  TG+V RVT  AV V  ED+ D  SL      RL  +A++ T+ +L   L+AL++Y  GGPA  LI+VLF    P A   S T P             + L++SQR AV F+LA RD+A+IHGPPGTGKTTT+V ++L+AV +GL+ L CAPSNVAVD ++E+L  +           VR++R+GHPARLL
Sbjct:   10 KELQRRGVCLLKLHAASQRTGLYGRLLVTFQPRKHDPDAELPSNSFGPGDIAGLYDAA-------SQGDALCTGIVTRVTSRAVTVAFEDSQDTLSLDHERSYRLLKLANDVTYNRLKKALNALKQY-RGGPASDLIDVLFFSAEPRAF--SETKPL--------QLYNNSLDESQREAVSFSLAQRDLAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGRS----------VRILRLGHPARLL 243
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: T0R7F1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7F1_SAPDV)

HSP 1 Score: 164 bits (414), Expect = 1.010e-42
Identity = 109/258 (42.25%), Postives = 153/258 (59.30%), Query Frame = 1 
Query:   40 LLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDIT-----GVVGRVTELAVEVLSEDADDAGSLR-PPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLF-GVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARG-LRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHPARLLPQ 789
            LL L +   +TGL+GR  + +   ++R LP+H F  GD V+L              P+D       G+V +V E A+ +  ED D+A       LRLD + ++AT+RKL  G+D L KY + GPA  ++NV+F G EP +  + S  TP+              +N SQ +A+E+ALA++D+ALIHGPPGTGKTTTVV L+ + V++  ++ LVCAPSN+AVD +LEK+ A        T P  RV R+GHPARLLPQ
Sbjct:   45 LLHLRLASATTGLFGRTVLLLTQGQNRELPSHHFGIGDLVQLSVPTA------SPTPADANDGLPRGIVTKVEEHAISIAFEDLDNADEYHNQALRLDRLVNDATYRKLHEGIDRLAKY-NDGPAMNILNVVFHGGEPQTKPI-SPFTPST------------PMNASQIDAIEYALASKDIALIHGPPGTGKTTTVVELITQCVSQHKMKILVCAPSNIAVDNVLEKVAA--------TKPKFRVTRIGHPARLLPQ 274
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: A0A067CTI3_SAPPC (AN1-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTI3_SAPPC)

HSP 1 Score: 164 bits (416), Expect = 1.530e-42
Identity = 110/257 (42.80%), Postives = 152/257 (59.14%), Query Frame = 1 
Query:   40 LLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDITG----VVGRVTELAVEVLSEDADDAGSLR-PPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLF-GVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARG-LRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHPARLLPQ 789
            LL L +   +TGL+GR  + +   ++R LPAH F  GD V+L              P+D  G    +V +V E A+ +  ED D++       LRLD + ++AT+RKL  G+D L KY + GPA  ++NV+F GVEP +  + S  TP+              +N SQ  A+E+ALA++D+ALIHGPPGTGKTTTVV L+ + V +  ++ LVCAPSN+AVD +LEK+ A        T P  RV R+GHPARLLPQ
Sbjct:   45 LLHLRLASATTGLFGRTVLLLTQGQNRELPAHHFGIGDLVQLSVPTASLT------PADANGFPRGIVTKVEEHAISLAFEDLDNSDEYHNQALRLDRLVNDATYRKLHEGIDRLAKY-NDGPAMNILNVIFHGVEPQTNPI-SPLTPS------------RPMNASQIAAIEYALASKDIALIHGPPGTGKTTTVVELITQCVTKHKMKILVCAPSNIAVDNVLEKVAA--------TKPTFRVTRIGHPARLLPQ 273
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BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Match: T0QVZ5_SAPDV (AN1-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QVZ5_SAPDV)

HSP 1 Score: 164 bits (414), Expect = 2.890e-42
Identity = 109/258 (42.25%), Postives = 153/258 (59.30%), Query Frame = 1 
Query:   40 LLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYGSKRGKGGDEEEGPSDIT-----GVVGRVTELAVEVLSEDADDAGSLR-PPLRLDVVASEATHRKLMLGLDALEKYPSGGPAERLINVLF-GVEPPSAVVPSTTTPAVGSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALVLEAVARG-LRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHPARLLPQ 789
            LL L +   +TGL+GR  + +   ++R LP+H F  GD V+L              P+D       G+V +V E A+ +  ED D+A       LRLD + ++AT+RKL  G+D L KY + GPA  ++NV+F G EP +  + S  TP+              +N SQ +A+E+ALA++D+ALIHGPPGTGKTTTVV L+ + V++  ++ LVCAPSN+AVD +LEK+ A        T P  RV R+GHPARLLPQ
Sbjct:   45 LLHLRLASATTGLFGRTVLLLTQGQNRELPSHHFGIGDLVQLSVPTA------SPTPADANDGLPRGIVTKVEEHAISIAFEDLDNADEYHNQALRLDRLVNDATYRKLHEGIDRLAKY-NDGPAMNILNVVFHGGEPQTKPI-SPFTPST------------PMNASQIDAIEYALASKDIALIHGPPGTGKTTTVVELITQCVSQHKMKILVCAPSNIAVDNVLEKVAA--------TKPKFRVTRIGHPARLLPQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73329.15020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K5_ECTSI2.470e-11170.42R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JGH1_9PHAE3.820e-7466.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7I8_9STRA6.520e-6552.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9CVU4_9STRA9.410e-4944.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TRN4_9STRA2.780e-4843.24Dna-binding protein smubp-2 n=1 Tax=Nannochloropsi... [more]
A0A0Q3LUE7_AMAAE9.010e-4543.13DNA-binding protein SMUBP-2 n=1 Tax=Amazona aestiv... [more]
A0A7L0M4D6_9PSIT8.430e-4343.13SMBP2 protein (Fragment) n=7 Tax=Psittaciformes Ta... [more]
T0R7F1_SAPDV1.010e-4242.25Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067CTI3_SAPPC1.530e-4242.80AN1-type domain-containing protein n=1 Tax=Saprole... [more]
T0QVZ5_SAPDV2.890e-4242.25AN1-type domain-containing protein n=1 Tax=Saprole... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73329contigH-elongata_contig73329:927..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.8
Seed ortholog evalue3.5e-95
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Hectar predicted targeting categoryother localisation
Exons4
Model size789
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73329.15020.1prot_H-elongata_contig73329.15020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73329 948..2968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.4335856-UTR-H-elongata_contig73329:926..9471622931136.4335856-UTR-H-elongata_contig73329:926..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73329 927..947 +
1691679713.4695756-UTR-H-elongata_contig73329:926..9471691679713.4695756-UTR-H-elongata_contig73329:926..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73329 927..947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.449883-CDS-H-elongata_contig73329:947..11491622931136.449883-CDS-H-elongata_contig73329:947..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 948..1149 +
1691679713.480234-CDS-H-elongata_contig73329:947..11491691679713.480234-CDS-H-elongata_contig73329:947..1149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 948..1149 +
1622931136.4660742-CDS-H-elongata_contig73329:1753..18841622931136.4660742-CDS-H-elongata_contig73329:1753..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 1754..1884 +
1691679713.4921777-CDS-H-elongata_contig73329:1753..18841691679713.4921777-CDS-H-elongata_contig73329:1753..1884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 1754..1884 +
1622931136.4805691-CDS-H-elongata_contig73329:2240..24721622931136.4805691-CDS-H-elongata_contig73329:2240..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 2241..2472 +
1691679713.5121477-CDS-H-elongata_contig73329:2240..24721691679713.5121477-CDS-H-elongata_contig73329:2240..2472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 2241..2472 +
1622931136.5240583-CDS-H-elongata_contig73329:2765..29681622931136.5240583-CDS-H-elongata_contig73329:2765..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 2766..2968 +
1691679713.521504-CDS-H-elongata_contig73329:2765..29681691679713.521504-CDS-H-elongata_contig73329:2765..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73329 2766..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73329.15020.1

>prot_H-elongata_contig73329.15020.1 ID=prot_H-elongata_contig73329.15020.1|Name=mRNA_H-elongata_contig73329.15020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MERGVSLLPLAVKGMSTGLYGRACVSVADPKDRPLPAHRFSAGDEVRLYG
SKRGKGGDEEEGPSDITGVVGRVTELAVEVLSEDADDAGSLRPPLRLDVV
ASEATHRKLMLGLDALEKYPSGGPAERLINVLFGVEPPSAVVPSTTTPAV
GSGAGAAMSATSRLNDSQRNAVEFALATRDVALIHGPPGTGKTTTVVALV
LEAVARGLRCLVCAPSNVAVDGILEKLVAKGGGEDVRTNPCVRVVRMGHP
ARLLPQ
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mRNA from alignment at H-elongata_contig73329:927..2968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73329.15020.1 ID=mRNA_H-elongata_contig73329.15020.1|Name=mRNA_H-elongata_contig73329.15020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2042bp|location=Sequence derived from alignment at H-elongata_contig73329:927..2968+ (Himanthalia elongata Himel1 dioecious)
AAATTCGCGGGACAGGAATGCATGGAAAGGGGGGTGAGCCTGTTGCCGCT
GGCTGTCAAGGGGATGTCGACCGGGCTGTATGGGAGGGCGTGCGTCTCAG
TCGCCGACCCGAAAGATAGACCGCTCCCGGCGCATCGATTCAGCGCGGGG
GACGAGGTTCGGCTATACGGCAGCAAGAGGGGCAAGGGCGGGGATGAAGA
GGAAGGACCATCGGACATAACAGGTGGAAGTGTGTTTTTGATCGGATGCT
ATTAATGGTTCGAGTTCTATTAGCGAACTGGAGCTATGCGAACGCCCCTC
GAAGGTGTAGGCGACATAGACTTCCAGGCCTCATCCTTTGAATATACCGA
ATATACCTGGAATCGCCGCGATGTGTTGCATGTTGTGAACTGCATACCTC
GGTGCTGTAGGTTTCAAACTGCTAGTGCTGTACCACAAGGAACGAAGTAG
TATTAATGGTACAAATGCTTCACAGCACGTGACACGACCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCCTCCACCCCCCCCCACCCCCCCCCCCC
CCTCCCCCTCCCTCTTCCCNNNNNNNNNNCAAACTGCTATTTTGGTACGA
CAATAAACGAAGTAGTATTAATGTTACAAATTCTTCACCCCACGTCACAC
GCCCCCCCCCCCCCTCCCCTCCCCTCCCCTCCTCCTCTTCCAGACGGATC
GATCGCCATCCACATGTATTCCGACGATATTCCCTCAACAGGCGGGCTTG
CGACCTCTTATATCTACAGTAGCGTGCGCTTTGATTCTTCGTGCCTTCAC
ACTCCGTTGCGCTTACCCACGTTGCAGGGGTTGTCGGTAGGGTCACGGAG
CTAGCGGTGGAGGTCTTGAGTGAAGACGCCGACGATGCCGGCTCCCTCCG
CCCCCCACTACGGCTGGACGTGGTCGCCAGCGAGGCCACCCACAGGAAGC
TAATGCTGGTACGCCCCGAGAGAGAACGAAAGGGTTTGTCTGAGGCATGG
TTGGCGTTTGTGTCGGGGTCGTTATTTGTGCGTAACGTTTGGCAAGCGAA
GGAATCATCCCGCCTGGCTTGGGGATGGGTGACGATGGCCCCCATCATTC
CGTTGTTGGGTACGTACGGCGTACAGGTAGTGCTTGTCCAGCAAAGTAGC
AGGGGGAGGGGTGGATCGGGGCGGTGTTTGTTTCAGTTTTATTTGTGTCG
AGCACCCTCAGCGAGCGCGAACGATTGTCCACCTATAAGAAAGAACCCAA
CAATTGCCTCTCCCTTCCCCCACTCCGTCGCCATTTTACACTGTACTTTT
CCTCCTCGGCTCAGGGACTCGATGCGTTGGAGAAGTATCCCAGTGGAGGG
CCAGCGGAGCGTCTCATCAACGTCCTTTTCGGCGTTGAGCCACCATCGGC
TGTAGTACCCTCCACGACGACCCCGGCTGTTGGATCTGGAGCTGGAGCCG
CCATGTCCGCCACCTCGCGATTAAATGACTCACAACGCAATGCTGTCGAG
TTCGCCCTCGCCACGCGTGACGTAGCCCTTATTCATGGCCCTCCAGGTAT
ATACCGCTGCGACAGGGAGCCGGTTTCCCTTTTTTGACGACCGTACGTGT
CGGTCAGCAGATAACCCCCCCCGGGACTCAGTTAATAGGAACATGAGGTA
AACCCTTACGTGAATCGCCAGTGACAAGCAAAAACAATATATATATATAT
ATATGGTACAGTGGACGGTTGGAGTCCTCCGAACCCACTATGCAAAAGTT
GAGCACCCCCCCTCCACACACACACGCAAACACGCACACAAACTGATCTC
TGCACAAATATCTCCGCAAAATTATTGGAAACCCTGCAGGTACCGGCAAA
ACGACGACGGTTGTGGCGCTCGTGTTAGAGGCGGTGGCGCGTGGCTTGAG
GTGCCTGGTTTGCGCTCCGTCGAACGTGGCGGTCGACGGTATTCTGGAGA
AGCTCGTCGCCAAAGGAGGCGGAGAAGATGTTCGGACGAACCCGTGCGTG
CGCGTGGTGCGCATGGGCCACCCCGCTAGGCTGTTGCCCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig73329:927..2968+

>mRNA_H-elongata_contig73329.15020.1 ID=mRNA_H-elongata_contig73329.15020.1|Name=mRNA_H-elongata_contig73329.15020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig73329:927..2968+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAGGGGGGTGAGCCTGTTGCCGCTGGCTGTCAAGGGGATGTCGAC
CGGGCTGTATGGGAGGGCGTGCGTCTCAGTCGCCGACCCGAAAGATAGAC
CGCTCCCGGCGCATCGATTCAGCGCGGGGGACGAGGTTCGGCTATACGGC
AGCAAGAGGGGCAAGGGCGGGGATGAAGAGGAAGGACCATCGGACATAAC
AGATGGAAAGGGGGGTGAGCCTGTTGCCGCTGGCTGTCAAGGGGATGTCG
ACCGGGCTGTATGGGAGGGCGTGCGTCTCAGTCGCCGACCCGAAAGATAG
ACCGCTCCCGGCGCATCGATTCAGCGCGGGGGACGAGGTTCGGCTATACG
GCAGCAAGAGGGGCAAGGGCGGGGATGAAGAGGAAGGACCATCGGACATA
ACAGGGGTTGTCGGTAGGGTCACGGAGCTAGCGGTGGAGGTCTTGAGTGA
AGACGCCGACGATGCCGGCTCCCTCCGCCCCCCACTACGGCTGGACGTGG
TCGCCAGCGAGGCCACCCACAGGAAGCTAATGCTGGGGTTGTCGGTAGGG
TCACGGAGCTAGCGGTGGAGGTCTTGAGTGAAGACGCCGACGATGCCGGC
TCCCTCCGCCCCCCACTACGGCTGGACGTGGTCGCCAGCGAGGCCACCCA
CAGGAAGCTAATGCTGGGACTCGATGCGTTGGAGAAGTATCCCAGTGGAG
GGCCAGCGGAGCGTCTCATCAACGTCCTTTTCGGCGTTGAGCCACCATCG
GCTGTAGTACCCTCCACGACGACCCCGGCTGTTGGATCTGGAGCTGGAGC
CGCCATGTCCGCCACCTCGCGATTAAATGACTCACAACGCAATGCTGTCG
AGTTCGCCCTCGCCACGCGTGACGTAGCCCTTATTCATGGCCCTCCAGGG
ACTCGATGCGTTGGAGAAGTATCCCAGTGGAGGGCCAGCGGAGCGTCTCA
TCAACGTCCTTTTCGGCGTTGAGCCACCATCGGCTGTAGTACCCTCCACG
ACGACCCCGGCTGTTGGATCTGGAGCTGGAGCCGCCATGTCCGCCACCTC
GCGATTAAATGACTCACAACGCAATGCTGTCGAGTTCGCCCTCGCCACGC
GTGACGTAGCCCTTATTCATGGCCCTCCAGGTACCGGCAAAACGACGACG
GTTGTGGCGCTCGTGTTAGAGGCGGTGGCGCGTGGCTTGAGGTGCCTGGT
TTGCGCTCCGTCGAACGTGGCGGTCGACGGTATTCTGGAGAAGCTCGTCG
CCAAAGGAGGCGGAGAAGATGTTCGGACGAACCCGTGCGTGCGCGTGGTG
CGCATGGGCCACCCCGCTAGGCTGTTGCCCCAGGTACCGGCAAAACGACG
ACGGTTGTGGCGCTCGTGTTAGAGGCGGTGGCGCGTGGCTTGAGGTGCCT
GGTTTGCGCTCCGTCGAACGTGGCGGTCGACGGTATTCTGGAGAAGCTCG
TCGCCAAAGGAGGCGGAGAAGATGTTCGGACGAACCCGTGCGTGCGCGTG
GTGCGCATGGGCCACCCCGCTAGGCTGTTGCCCCAG
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