prot_H-elongata_contig73303.15014.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73303.15014.1
Unique Nameprot_H-elongata_contig73303.15014.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.150e-30
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0 
Query:    3 VRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVRVRWKSRGGRGFVIGAGEKAALRGFLLGA-MDEPEERVASQV 90
            VRKPAEQLLKACEE+PGY S+LA+I     A  DARA AVILLKNMVRVRW+SRGGRG V+G GEKAALR  L GA M+EPEERV SQ+
Sbjct:   33 VRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDGEKAALREVLAGAGMEEPEERVVSQL 121
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BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Match: A0A6H5L766_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L766_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 7.270e-30
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:    3 VRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVRVRWKSRGGRGFVIGAGEKAALRGFLLGA-MDEPEERVASQV 90
            VRKPAEQLLKACEE+PGY S+LA+I     A  DARA AVILLKNMVRVRW+SRGGRG V+G  EKAALR  L GA M+EPEERV SQ+
Sbjct:   33 VRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDREKAALREVLAGAGMEEPEERVVSQL 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G019_ECTSI3.150e-3074.16Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L766_9PHAE7.270e-3073.03Importin N-terminal domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 7..81
e-value: 2.9E-7
score: 40.1
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 7..79
e-value: 7.0E-9
score: 35.5
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 7..81
score: 16.768
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..94
e-value: 2.2E-21
score: 77.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 3..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73303contigH-elongata_contig73303:969..1250 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73303.15014.1mRNA_H-elongata_contig73303.15014.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73303 969..1250 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73303.15014.1 ID=prot_H-elongata_contig73303.15014.1|Name=mRNA_H-elongata_contig73303.15014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
EHVRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVR
VRWKSRGGRGFVIGAGEKAALRGFLLGAMDEPEERVASQVRLSV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR011989ARM-like
IPR016024ARM-type_fold