mRNA_H-elongata_contig733.15011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig733.15011.1
Unique NamemRNA_H-elongata_contig733.15011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.770e-10
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   52 SPTPFHEAAQRMDTSDDVSVGCEKYGGNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCID 258
            SPTP       +   DD+ +G      +G CDD+ NNEDC WDGGDCCEC+C     + CG+ +YDC+D
Sbjct:  320 SPTP------SLSLCDDLRIG------DGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLD 376
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.180e-10
Identity = 42/102 (41.18%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:    1 DCQDPD--SSCFVNSQDMFSPTPFHEAAQRMDTSDDVSVGCEKYG---GNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCIDSTSCARTPAPT 291
            DC DPD  SSC  +S     PTP   A             CE Y    G+G CD   NNE+C WDGGDCC C+C+    + C S   DC D  +   TP+PT
Sbjct:  196 DCMDPDAPSSCSTDS-----PTPSPAAGTDWPE-------CEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDPNANCTTPSPT 285
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-9
Identity = 41/102 (40.20%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:    1 DCQDPD--SSCFVNSQDMFSPTPFHEAAQRMDTSDDVSVGCEKYG---GNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCIDSTSCARTPAPT 291
            DC DPD  S+C  +S     PTP   A             CE Y    G+G CD   NNE+C WDGGDCC C+C+    + C S   DC D  +   TP+PT
Sbjct:  195 DCMDPDAPSACSTDS-----PTPSPAAGTDWPE-------CEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNANCTTPSPT 284
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.450e-7
Identity = 42/101 (41.58%), Postives = 50/101 (49.50%), Query Frame = 1 
Query:    1 DCQDPD--SSCFVNSQDMFSPTPFHEAAQRMDTSDDVSVGCEKYG---GNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCID---STSCART 279
            DC DP+  SSC  +S     PTP   A             CE Y    G+G CD   NNE+C WDGGDCC C+C   G + CG   +DC D   ST C+ T
Sbjct:  283 DCLDPEAPSSCSTDS-----PTPSPAAGTDWPE-------CEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTCVS-GYYTCGYYTFDCEDPSVSTDCSTT 370
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: A0A6H5JTB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.930e-6
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  130 GNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCID 258
            GNG+CDDE+NNE C +DGGDCC  SC  +    CG+ EYDC D
Sbjct:  251 GNGRCDDEYNNEFCLFDGGDCCAPSCLGES---CGAYEYDCKD 290
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BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.450e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   97 DDVSVG----CEKYGGNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCIDSTS 267
            DDV+ G    C  +G +G C+D  NNE C +DGGDCCEC+C  D   + G  E+ CID T+
Sbjct:   49 DDVTEGMFEDCFNFG-DGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTA 108
[Close]
BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.160e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   97 DDVSVG----CEKYGGNGQCDDEFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCIDSTS 267
            DDV+ G    C  +G +G C+D  NNE C +DGGDCCEC+C  D   + G  E+ CID T+
Sbjct:  198 DDVTEGMFEDCFNFG-DGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTA 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig733.15011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G136_ECTSI2.770e-1046.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX77_ECTSI3.180e-1041.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE2.030e-940.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE1.450e-741.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB5_9PHAE2.930e-660.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI4.450e-647.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE6.160e-647.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig733contigH-elongata_contig733:6683..8549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog2880.D7FX77
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig733.15011.1prot_H-elongata_contig733.15011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig733 6683..8549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.4450142-CDS-H-elongata_contig733:6682..67101622931135.4450142-CDS-H-elongata_contig733:6682..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 6683..6710 +
1691679712.9765792-CDS-H-elongata_contig733:6682..67101691679712.9765792-CDS-H-elongata_contig733:6682..6710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 6683..6710 +
1622931135.4660826-CDS-H-elongata_contig733:7059..72301622931135.4660826-CDS-H-elongata_contig733:7059..7230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 7060..7230 +
1691679712.9918072-CDS-H-elongata_contig733:7059..72301691679712.9918072-CDS-H-elongata_contig733:7059..7230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 7060..7230 +
1622931135.4844544-CDS-H-elongata_contig733:7620..76921622931135.4844544-CDS-H-elongata_contig733:7620..7692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 7621..7692 +
1691679713.0034711-CDS-H-elongata_contig733:7620..76921691679713.0034711-CDS-H-elongata_contig733:7620..7692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 7621..7692 +
1622931135.499785-CDS-H-elongata_contig733:8403..85491622931135.499785-CDS-H-elongata_contig733:8403..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 8404..8549 +
1691679713.0140862-CDS-H-elongata_contig733:8403..85491691679713.0140862-CDS-H-elongata_contig733:8403..8549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 8404..8549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig733.15011.1

>prot_H-elongata_contig733.15011.1 ID=prot_H-elongata_contig733.15011.1|Name=mRNA_H-elongata_contig733.15011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
DCQDPDSSCFVNSQDMFSPTPFHEAAQRMDTSDDVSVGCEKYGGNGQCDD
EFNNEDCSWDGGDCCECSCKKDGKFDCGSVEYDCIDSTSCARTPAPTLAP
TTTPTPSLAGTPSPTLAPITTPTPSLAETPAPTLAPITT
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mRNA from alignment at H-elongata_contig733:6683..8549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig733.15011.1 ID=mRNA_H-elongata_contig733.15011.1|Name=mRNA_H-elongata_contig733.15011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1867bp|location=Sequence derived from alignment at H-elongata_contig733:6683..8549+ (Himanthalia elongata Himel1 dioecious)
GATTGTCAAGATCCTGACTCTAGCTGCTGTAAGTCGTCGTTCATTAGCTG
GATCACCTCTTTAACTAAAACATTCAACTTGGCGTATACTTCCATAACTT
ACTTGCTGCAAATGTTGACGAACATTGATAAATTGATGAATCGCGGAAAC
TATTTAGTCCGTCATATTTGCACGATTTTTCCGCCAAATCGTTATGGTCT
CATTGAAGTATCCCGCTGGATATATCAAAGGCCATATATTCCACCAGTTA
ATAAGTCACAATAAATCATGAGCGAAATGTTATGCCGACATTAGTTCTAG
CTTAACTACACCCTGTATTGCTCGTCCCGTATTTTTGCCCAAACCATTTC
ACGCCCCGGCTTTCCTGACACTTCCAGTTGTAAATTCTCAAGATATGTTT
TCCCCTACTCCTTTCCATGAGGCTGCTCAAAGAATGGATACCTCAGATGA
TGTCTCCGTAGGTTGTGAGAAATATGGCGGCAATGGCCAATGTGACGATG
AGTTCAACAATGAGGATTGCTCATGGGACGGCGGTGACTGCTGTGAATGT
ATGTGCATTAATAATATATTATCCTTGCTTTGTGATGTTTTTTTTGTGTG
CTGAAATCGTGGTACTTTTTTAGCCATATTGGTTGCAAAACCAGAGTCGT
AAAATTAATGTAAAACACATTCCGCCGCGAATTCCGACATTTTACCTACG
ACCTACTACGAGCAACAATTAATAATATATTATCCTTGCTTTGTGATGGA
TTTTTTGTGTGCTGAAATCGTGGTACTTTTTTAGCCATATTGGTTGCAAA
AACAGAGGCGAAAAATTAATGTAAAACACATTCCGCCGCGAAATCCGACA
TTTTACCTACGACCTACTACGAGCAACAATTTTATGTTTTCTCGAACGGT
TTTCTGCCAATGATCGACCAATGTTTGGATTTTATCAGGTTCCTGCAAAA
AAGATGGGAAGTTCGATTGCGGATCTGTTGAATATGATTGTATAGATTCT
ACCTCCTGCGGTGAGTACGCGGTAGACGGTTGGGCGTCCATCAATGTTTA
CTTGAGATTATTTCACATGTTTAATTCTTCTGGATTTAGCTTACACGCCG
ACTCGGGTTTAAGGGATGCCTCACGCGATATGACGAATGGGAGATATTTT
CTAAAACTGCTTTGGCCCGGGTTTTTTTCAGTTATTATAGTTGATGAAAC
ATTTTTATTGAGACATCAGGCAAGAGATATATTTGCTAGAAGGAAATATG
GCGTAAGAAGAGATTGTATTTAACTTTCTGTTTAAAATTTAGAGTTTATT
TCCCGCAACGATAATTTATGAACTAAGAGCGGAAAATATCAAGGTTTGGC
TCCATCTATAAATACAGAATAAAACTATTGTAAAAACATAAAAATGGAAC
ATAAAAGCAAATAATGTAAACAGACGTGATTCGGAAGGAGACCCATTTAT
TTCCGATGTAAAATAACATTCGCCAGGGAAACCTGTACCAATTGATCTAA
CACGCGAAACATTTTTTTTTGTCGATGACTCTTTCCTTTGGCGATCACAC
CGGGTTTAGGGCCAACACCGGCTCCGACACTGGCAGAAATTATAACACGA
ACACCGAGTCTAGTGCCAACACCCGCTCCGACACTGGCGCCAATTGCAAC
ACCAACACCGAGTTTAGCTGAAACACCGGCCCCGACACTGGCACCAATTA
CAACACGAACACCAAGATTAGCGCGAACACCGGCTCCGACACTGGCACCA
ACTACAACACCAACACCGAGTTTAGCGGGAACACCATCTCCGACACTGGC
ACCAATTACAACACCAACACCGAGTTTAGCTGAAACACCGGCTCCGACAC
TAGCACCAATTACAACA
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Coding sequence (CDS) from alignment at H-elongata_contig733:6683..8549+

>mRNA_H-elongata_contig733.15011.1 ID=mRNA_H-elongata_contig733.15011.1|Name=mRNA_H-elongata_contig733.15011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig733:6683..8549+ (Himanthalia elongata Himel1 dioecious)
GATTGTCAAGATCCTGACTCTAGCTGCTGATTGTCAAGATCCTGACTCTA
GCTGCTTTGTAAATTCTCAAGATATGTTTTCCCCTACTCCTTTCCATGAG
GCTGCTCAAAGAATGGATACCTCAGATGATGTCTCCGTAGGTTGTGAGAA
ATATGGCGGCAATGGCCAATGTGACGATGAGTTCAACAATGAGGATTGCT
CATGGGACGGCGGTGACTGCTGTGAATTTGTAAATTCTCAAGATATGTTT
TCCCCTACTCCTTTCCATGAGGCTGCTCAAAGAATGGATACCTCAGATGA
TGTCTCCGTAGGTTGTGAGAAATATGGCGGCAATGGCCAATGTGACGATG
AGTTCAACAATGAGGATTGCTCATGGGACGGCGGTGACTGCTGTGAATGT
TCCTGCAAAAAAGATGGGAAGTTCGATTGCGGATCTGTTGAATATGATTG
TATAGATTCTACCTCCTGCGGTTCCTGCAAAAAAGATGGGAAGTTCGATT
GCGGATCTGTTGAATATGATTGTATAGATTCTACCTCCTGCGCGCGAACA
CCGGCTCCGACACTGGCACCAACTACAACACCAACACCGAGTTTAGCGGG
AACACCATCTCCGACACTGGCACCAATTACAACACCAACACCGAGTTTAG
CTGAAACACCGGCTCCGACACTAGCACCAATTACAACACGCGAACACCGG
CTCCGACACTGGCACCAACTACAACACCAACACCGAGTTTAGCGGGAACA
CCATCTCCGACACTGGCACCAATTACAACACCAACACCGAGTTTAGCTGA
AACACCGGCTCCGACACTAGCACCAATTACAACA
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