mRNA_H-elongata_contig11949.1501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11949.1501.1
Unique NamemRNA_H-elongata_contig11949.1501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A7S0STC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STC0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.470e-59
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDH+YD VVVGAGGAGLRAAMGCAEAGFKTAC+TKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV
Sbjct:   41 VDHDYDCVVVGAGGAGLRAAMGCAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 133
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A2P4YK26_9STRA (Succinate dehydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK26_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.360e-58
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHEYDAVVVGAGGAGLRAAMGCAEAG KTACI+KLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV
Sbjct:   47 VDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPEAV 139
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A6A5AM25_9STRA (FAD_binding_2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM25_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.450e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHE+DAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV
Sbjct:   29 VDHEFDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAV 121
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A8H7UXE1_9FUNG (FAD_binding_2 domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UXE1_9FUNG)

HSP 1 Score: 184 bits (467), Expect = 1.190e-57
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:   22 PQVDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            P +DHEYDAVVVGAGGAGLRAA G AEAG  TACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP  V
Sbjct:   54 PIIDHEYDAVVVGAGGAGLRAAFGLAEAGLNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPHTV 148
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A7S2YSM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSM3_9STRA)

HSP 1 Score: 187 bits (475), Expect = 9.400e-57
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHEYDAVVVGAGG+GLRAAMG +EAGFKTAC+TKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP+AV
Sbjct:   37 VDHEYDAVVVGAGGSGLRAAMGLSEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAV 129
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A7S1ZM11_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZM11_TRICV)

HSP 1 Score: 184 bits (467), Expect = 4.990e-56
Identity = 85/93 (91.40%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHEYDAVVVGAGGAGLRAAMG +EAGF+TAC++KLFPTRSHTVAAQGG+NAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP AV
Sbjct:   43 VDHEYDAVVVGAGGAGLRAAMGLSEAGFRTACVSKLFPTRSHTVAAQGGVNAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPAAV 135
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: W4H7S1_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=10 Tax=Saprolegniaceae TaxID=4764 RepID=W4H7S1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 7.250e-56
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHE+DAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAAL NMTEDDWRWHMYDTVKGSDWLGDQDAIHYMC+EAPRAV
Sbjct:   29 VDHEFDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALANMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAV 121
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BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A8H7UZ46_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UZ46_9FUNG)

HSP 1 Score: 185 bits (469), Expect = 1.020e-55
Identity = 88/97 (90.72%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:   16 NAPQVDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            N P  DHEYDAVVVG GGAGLRAA G AEAGF TACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAP  V
Sbjct:  206 NYPIFDHEYDAVVVGTGGAGLRAAFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPHTV 302
[Close]
BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A8H6XD98_9AGAR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6XD98_9AGAR)

HSP 1 Score: 191 bits (485), Expect = 1.190e-55
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    4 WGQQNAPQVDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            W     P ++HEYDA+VVGAGGAGLRAA G AEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPR V
Sbjct:   39 WASGKYPLIEHEYDAIVVGAGGAGLRAAFGLAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRTV 139
[Close]
BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Match: A0A7S1XYN2_9STRA (Succinate dehydrogenase (quinone) (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYN2_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.310e-55
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:   28 VDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 306
            VDHE+DAVVVGAGGAGLRAAMG +E GFKTAC+TKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV
Sbjct:   19 VDHEFDAVVVGAGGAGLRAAMGLSEHGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAV 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11949.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0STC0_9STRA8.470e-5996.77Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A2P4YK26_9STRA3.360e-5895.70Succinate dehydrogenase (Fragment) n=1 Tax=Phytoph... [more]
A0A6A5AM25_9STRA6.450e-5896.77FAD_binding_2 domain-containing protein (Fragment)... [more]
A0A8H7UXE1_9FUNG1.190e-5791.58FAD_binding_2 domain-containing protein n=1 Tax=Mu... [more]
A0A7S2YSM3_9STRA9.400e-5793.55Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1ZM11_TRICV4.990e-5691.40Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W4H7S1_9STRA7.250e-5696.77Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A8H7UZ46_9FUNG1.020e-5590.72Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A8H6XD98_9AGAR1.190e-5588.12Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S1XYN2_9STRA1.310e-5594.62Succinate dehydrogenase (quinone) (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11949contigH-elongata_contig11949:59..1081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.2e-46
Seed eggNOG ortholog157072.XP_008870100.1
Preferred nameSDH1
KEGG rclassRC00045
KEGG koko:K00234
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046956,GO:0050896,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.anaerobic respiration
EggNOG OGsCOG1053@1,KOG2403@2759
EC1.3.5.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.2341986-CDS-H-elongata_contig11949:58..1491622929699.2341986-CDS-H-elongata_contig11949:58..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11949 59..149 -
1691679123.5762749-CDS-H-elongata_contig11949:58..1491691679123.5762749-CDS-H-elongata_contig11949:58..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11949 59..149 -
1622929699.2522593-CDS-H-elongata_contig11949:866..10811622929699.2522593-CDS-H-elongata_contig11949:866..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11949 867..1081 -
1691679123.590764-CDS-H-elongata_contig11949:866..10811691679123.590764-CDS-H-elongata_contig11949:866..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11949 867..1081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11949.1501.1prot_H-elongata_contig11949.1501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11949 59..1081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11949.1501.1

>prot_H-elongata_contig11949.1501.1 ID=prot_H-elongata_contig11949.1501.1|Name=mRNA_H-elongata_contig11949.1501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
GWGQQNAPQVDHEYDAVVVGAGGAGLRAAMGCAEAGFKTACITKLFPTRS
HTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPR
AV
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mRNA from alignment at H-elongata_contig11949:59..1081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11949.1501.1 ID=mRNA_H-elongata_contig11949.1501.1|Name=mRNA_H-elongata_contig11949.1501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig11949:59..1081- (Himanthalia elongata Himel1 dioecious)
GGTTGGGGTCAACAAAACGCCCCTCAAGTTGACCACGAGTACGATGCGGT
TGTCGTTGGGGCGGGTGGAGCCGGGCTCCGCGCCGCCATGGGCTGCGCCG
AGGCTGGCTTCAAGACGGCATGTATCACCAAGCTCTTCCCGACGCGCTCC
CACACGGTGGCGGCGCAGGGGGGTATCAACGCCGCGTTAGGCAACATGAC
GGAGGACGACTGGCGGTGAGAGCTACTCGCGCTCTGGACGATCTGATGTG
ATGCGATGCGACTAGTCCGTGGGTGTGGTGAGGCGTACAGTCCTTGGTTG
CTCTGAAAATACAGTTTAACATTTTGATATTCCCCCGTTTATGAGTCAGT
CAAAGCTTGGCGAAGGGGTGATTCGAGGGGGGAGTTCTTGACCATAAGTC
GGTTGCGATTGCGTCTGCAGAACTTTGTCTGCGAGTATCTAGAGGCGTTC
TCGGGGGAGGAGGGAGGTGGAGCTTTCTCCTCCCTCCCGCGTGTTGTGAA
GACATCGATATTACTTCACGACGGCACGAACAAGTACATCCTTGGTATTT
AGCACCTGGTAATTTTTATCAAGATTATTTTGTTCAAGTCAACTCGCCCC
CAAAGCCATTCGCTGTCGATGGCGTTACTCTCCGGGGAAAATGTTTTGAG
AGAAAATTCTACACAATGTCACTCATCCCTGCTACGTTAACCTCGACCGA
ATCGTTCCCAAATGGCGAAGCGGGGGAACGAAGCGGATCAAGGCGGGGTG
ATATGGTGCTTGATCACCATGCTACCTCGGCAGTCGATAGTCAATAATCG
ATAATCATGCTTCCTCAAGAAGTGAGAGGGGGAGAGTCCTCTGACCCCTG
CGTGTTCTTCGTGGTCATTTTTTTTTTCACCACACGCTATCCTCGGCCCT
TAACGGTGTCCAACCTTGTAAAAAAAATGAAGGTGGCACATGTACGACAC
CGTTAAGGGGTCTGATTGGCTCGGAGACCAGGACGCCATCCACTACATGT
GCAGGGAGGCGCCGCGAGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig11949:59..1081-

>mRNA_H-elongata_contig11949.1501.1 ID=mRNA_H-elongata_contig11949.1501.1|Name=mRNA_H-elongata_contig11949.1501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig11949:59..1081- (Himanthalia elongata Himel1 dioecious)
GGTTGGGGTCAACAAAACGCCCCTCAAGTTGACCACGAGTACGATGCGGT
TGTCGTTGGGGCGGGTGGAGCCGGGCTCCGCGCCGCCATGGGCTGCGCCG
AGGCTGGCTTCAAGACGGCATGTATCACCAAGCTCTTCCCGACGCGCTCC
CACACGGTGGCGGCGCAGGGGGGTATCAACGCCGCGTTAGGCAACATGAC
GGAGGACGACTGGCGGGTTGGGGTCAACAAAACGCCCCTCAAGTTGACCA
CGAGTACGATGCGGTTGTCGTTGGGGCGGGTGGAGCCGGGCTCCGCGCCG
CCATGGGCTGCGCCGAGGCTGGCTTCAAGACGGCATGTATCACCAAGCTC
TTCCCGACGCGCTCCCACACGGTGGCGGCGCAGGGGGGTATCAACGCCGC
GTTAGGCAACATGACGGAGGACGACTGGCGGTGGCACATGTACGACACCG
TTAAGGGGTCTGATTGGCTCGGAGACCAGGACGCCATCCACTACATGTGC
AGGGAGGCGCCGCGAGCGGTGGTGGCACATGTACGACACCGTTAAGGGGT
CTGATTGGCTCGGAGACCAGGACGCCATCCACTACATGTGCAGGGAGGCG
CCGCGAGCGGTG
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