prot_H-elongata_contig73270.15006.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73270.15006.1
Unique Nameprot_H-elongata_contig73270.15006.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
[Close]
BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: A0A6H5JMN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.330e-45
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 0 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARL-QQFNSRVRRCCYVLDDIPAWADLGPYW 105
            G LSRDVR+   LI VNP  D R VGF T+ ++K+FG +NALLLDLSP+MAVP  R+FCL STQTLDEDPE +FQ  L QQ+NSRVRR CYVLDDIP WADLGPYW
Sbjct:  176 GYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYW 281
[Close]
BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: D8LH52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH52_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.470e-44
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 0 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARL-QQFNSRVRRCCYVLDDIPAWADLGPYW 105
            G LSRDVR+   LI VNP  D R VGF T+ ++K+FG +NALLLDLSP+M VP  R+FCL STQTLDEDPE +FQ  L QQ+NSRVRR CYVLDDIP WADLGPYW
Sbjct:  136 GYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMTVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYW 241
[Close]
BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: A0A835YSI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.040e-30
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARLQQFNSRVRRCCYVLDDIPAWADLGPYW 105
            G   RDVR+  RL+ +NP  DKR VGF  ++ LK  GR+NALLLD S +  VP  R+F L S +TLD DPE L   R   + S V+R C+VLD+IP WADLGP+W
Sbjct:   96 GFPERDVRMVVRLLALNPMHDKRIVGFEMMESLKALGRDNALLLDCSALREVPCLRVFALGSIRTLDADPE-LVDPRKLFYKSHVKRTCFVLDNIPEWADLGPFW 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMN8_9PHAE9.330e-4570.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH52_ECTSI1.470e-4469.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSI1_9STRA7.040e-3053.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73270contigH-elongata_contig73270:61..2811 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73270.15006.1mRNA_H-elongata_contig73270.15006.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73270 61..2811 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73270.15006.1 ID=prot_H-elongata_contig73270.15006.1|Name=mRNA_H-elongata_contig73270.15006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMM
AVPSCRIFCLASTQTLDEDPERLFQARLQQFNSRVRRCCYVLDDIPAWAD
LGPYW*
back to top