mRNA_H-elongata_contig73270.15006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73270.15006.1
Unique NamemRNA_H-elongata_contig73270.15006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: A0A6H5JMN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.330e-45
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARL-QQFNSRVRRCCYVLDDIPAWADLGPYW 315
            G LSRDVR+   LI VNP  D R VGF T+ ++K+FG +NALLLDLSP+MAVP  R+FCL STQTLDEDPE +FQ  L QQ+NSRVRR CYVLDDIP WADLGPYW
Sbjct:  176 GYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYW 281
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BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: D8LH52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH52_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.470e-44
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARL-QQFNSRVRRCCYVLDDIPAWADLGPYW 315
            G LSRDVR+   LI VNP  D R VGF T+ ++K+FG +NALLLDLSP+M VP  R+FCL STQTLDEDPE +FQ  L QQ+NSRVRR CYVLDDIP WADLGPYW
Sbjct:  136 GYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMTVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYW 241
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BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Match: A0A835YSI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.040e-30
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMMAVPSCRIFCLASTQTLDEDPERLFQARLQQFNSRVRRCCYVLDDIPAWADLGPYW 315
            G   RDVR+  RL+ +NP  DKR VGF  ++ LK  GR+NALLLD S +  VP  R+F L S +TLD DPE L   R   + S V+R C+VLD+IP WADLGP+W
Sbjct:   96 GFPERDVRMVVRLLALNPMHDKRIVGFEMMESLKALGRDNALLLDCSALREVPCLRVFALGSIRTLDADPE-LVDPRKLFYKSHVKRTCFVLDNIPEWADLGPFW 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73270.15006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMN8_9PHAE9.330e-4570.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH52_ECTSI1.470e-4469.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSI1_9STRA7.040e-3053.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73270contigH-elongata_contig73270:61..2811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_000580.1
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73270.15006.1prot_H-elongata_contig73270.15006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73270 61..2811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.7808454-CDS-H-elongata_contig73270:60..1831622931134.7808454-CDS-H-elongata_contig73270:60..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 61..183 +
1691679712.6188543-CDS-H-elongata_contig73270:60..1831691679712.6188543-CDS-H-elongata_contig73270:60..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 61..183 +
1622931134.8013303-CDS-H-elongata_contig73270:510..6191622931134.8013303-CDS-H-elongata_contig73270:510..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 511..619 +
1691679712.6275976-CDS-H-elongata_contig73270:510..6191691679712.6275976-CDS-H-elongata_contig73270:510..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 511..619 +
1622931134.8168-CDS-H-elongata_contig73270:2725..28111622931134.8168-CDS-H-elongata_contig73270:2725..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 2726..2811 +
1691679712.636892-CDS-H-elongata_contig73270:2725..28111691679712.636892-CDS-H-elongata_contig73270:2725..2811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73270 2726..2811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73270.15006.1

>prot_H-elongata_contig73270.15006.1 ID=prot_H-elongata_contig73270.15006.1|Name=mRNA_H-elongata_contig73270.15006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GSLSRDVRICSRLIVVNPAQDKRTVGFATVDQLKTFGRENALLLDLSPMM
AVPSCRIFCLASTQTLDEDPERLFQARLQQFNSRVRRCCYVLDDIPAWAD
LGPYW*
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mRNA from alignment at H-elongata_contig73270:61..2811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73270.15006.1 ID=mRNA_H-elongata_contig73270.15006.1|Name=mRNA_H-elongata_contig73270.15006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2751bp|location=Sequence derived from alignment at H-elongata_contig73270:61..2811+ (Himanthalia elongata Himel1 dioecious)
GGTTCGCTAAGTCGGGACGTACGTATCTGCTCACGACTAATCGTCGTGAA
TCCTGCGCAAGACAAGCGAACGGTCGGGTTCGCGACCGTTGATCAACTGA
AGACCTTCGGGAGGGAAAACGCGGTAAGCTTGATGTTGCTTTTCCGTTCC
CTCCCTATTGGGACTGGTCAATGCGAACAAGATGTTTTTAAAAGTGACAG
CGACAGAGCTTTTTTTTTTACTATGTATTGTTTTTTCTTCGCCCTGGAGC
TCTCCGTTGCTCAATAGTCACGCACCTAGGTTTTGTGCTACATCCCAAAC
CCGCACGGTGGGCTCATTATGTGAGGGAACGGACGTGAGTCTCTAGAACG
GCTTGTCGAAATCCACGACGTGACTTGATCCTCCCTCGGATAGGGTGGCC
GACACCCAACTGAACTGGATTTCGCGTGTGCCATATTTTTACATCCGTAG
CTGCTGCTGGATCTTTCCCCGATGATGGCGGTGCCGAGCTGTAGAATCTT
CTGTCTCGCCTCGACACAAACACTCGACGAGGACCCGGAGCGATTATTCC
AGGCGAGATGTCAAACCCGATAATGTATTCGTATTCTGCTACAAGTTCGC
TTCCGCAACACCCGCCCTTTGATTTTCAAGACGTTTCCGTGTAACGTCGT
GTCGTGTGCCTTCTACTCGGTTGGCGTATCCTATTAATAGCGAAGAAATA
CGCCTGCCAAATTTTGTGGAGTGACCCTTCACGCTGGGACCCCGGAGGCA
CTCGGATTGCAGAAGCCTATAACCATGTACTTGACCCCACCCCCCACCCT
TATTTTTGTGGAGTTATTGCAGTTATCTTAGGCTTGTTTTTACTTCGAGG
CTTGTATTGATTTGACCCCAGGAGACCCGCTCGCGAGTGATTTTACGGCG
AAGGTGTATCGACCGTCGAATGGGAGCAAGATACGAGAAGAAGAGTAAAG
AGTGTAATTAGAGAGAGGAAGAAACAGAAGCACCATGATTGAAACAATAA
TTCATGATGTGTGCGCTGTTTTTATTTTTATTTTATTTTTATTCGCGAGG
AAGTGCCCGCAAAACTCGCGATCGCTCGTTCTCACACTATCGTAGTGGGC
TCTATGTACAGTACTGTAATACATACCAAAATGGTACGTACGAGTATTGA
ACTTCGGGGAGAATGCACTGGTGTGTTACTACATGGCTGTTAGGATACTC
ACTATTAGTAAGTGCAATAACATAAAATACATTTCGTCGGTAGATGCAGC
CAGTCGTCCATCTTGTTGGGTGTGATCAATTGTTGATCAGTGATCAGTGT
TTGTTGTAGTATGTAATATATGTTCGTACAGCTGTCTGTAAAACAAAAGT
ACGTGTTTGTGTATTTCACAATTCACCCGATAAACTTAGACAGGGGAAAA
TTATTTTCCCTGTTCAGCTGACCACGAGCAGAAGACAACAAAATCCGGTT
GATCTTACTCTATACTGCTGAATATGAGTAATGTGAGTAATGTGAGTAAT
GTGAGTAATGTGTGACCACAACAACAACTATTGGGGAATACGATTAACTA
CACACACACATATATATATATATATATATATATATTTATGTGTGATGATT
TTGGGATCAAATGTAGTAATAATATAGTAGGTCATAGTCCCCTGGATTGC
ACCTACAACGAACGGTGCTAAGGAGGCATGGATGTTCGGGGGGTTGGAAT
TAGTTCATATGCTTTTAAAGAGAAAATGAATGATGATCGTCTTGGTTATG
ATAAGAGTCTTATATTTTTGCTTTTCGGTTCGTACTGCATGCGCTTGCCC
AAAAACAAATATATAAAGAGGTTCTGCATTTGAGAGCAATGACGTACATG
AGAATGGTATTCCGTTTTTTTTGTTTTTTTTAAGTAAAAAAAACTACCGT
CTGCTGTATCGCATTTCAAGGTATATAGTGAATAAAAAAGATACAAATAC
CAACATTCCCTCGGACAAGTTGTAGACTCAAAAAACACATAGTCTCTCCA
GTTATATACCAGTGGATACCAGCAGCAGCAGCCCCAGAAAAAAATAGCCG
AGAAAGCACGAAAGCGCTCGAGGGGAGTTCCACTGAGCATACAGGGGGGA
TTTTCCCCTATCGACCCCCACCCCCCCCCCCCCCTTTTTTTTTTTTTATT
TATTGCAGTTTTATACATATGTATAGGCTTCTGCAATCCGCGTGCCCCCG
GGCTGGGACTCGGTCGGAGGTAGTCTTGCAACCTACGTGTAAATTGATAG
AGCCAATTTTATCAGCTTGACGGTGGTGATTATGTTATTTGCCAATGCGG
TAGTCTATGCTGACACTTGCTATAGCTCTCAGTTGACGTTTTTCAATTGT
AAAGAAAGTAAAAAAGTTCCAAAAGTCTCAATAGCGTTGAAACAATCACG
ACTAGGGGCCACTGACTGCGCGCCGACAGAGGAAGATCCACGGCACGAGA
GGGGGATATCTTATGGTATATAAGTACTAGATGCGGTGGGAGTTTAGGCC
GAATATCGTCGGACATCGGCTCGAAGCTGTATTGACGTCTTCCGGCCTTC
GTGCTTTGTATACGTCAGTACGACCGGGGCACGGTTACGAATGTTTTTCG
AACGCAGTTAAGGTTGTGGGTGGGTGTATGCATGCTTCGACGTGTCGCTT
TGCAGGACCCTCTAGTGCAGCAGTTTAACAGTCGAGTGCGAAGATGTTGC
TACGTGCTGGACGACATTCCCGCATGGGCCGACCTCGGGCCGTACTGGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig73270:61..2811+

>mRNA_H-elongata_contig73270.15006.1 ID=mRNA_H-elongata_contig73270.15006.1|Name=mRNA_H-elongata_contig73270.15006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig73270:61..2811+ (Himanthalia elongata Himel1 dioecious)
GGTTCGCTAAGTCGGGACGTACGTATCTGCTCACGACTAATCGTCGTGAA
TCCTGCGCAAGACAAGCGAACGGTCGGGTTCGCGACCGTTGATCAACTGA
AGACCTTCGGGAGGGAAAACGCGGGTTCGCTAAGTCGGGACGTACGTATC
TGCTCACGACTAATCGTCGTGAATCCTGCGCAAGACAAGCGAACGGTCGG
GTTCGCGACCGTTGATCAACTGAAGACCTTCGGGAGGGAAAACGCGCTGC
TGCTGGATCTTTCCCCGATGATGGCGGTGCCGAGCTGTAGAATCTTCTGT
CTCGCCTCGACACAAACACTCGACGAGGACCCGGAGCGATTATTCCAGGC
GAGATCTGCTGCTGGATCTTTCCCCGATGATGGCGGTGCCGAGCTGTAGA
ATCTTCTGTCTCGCCTCGACACAAACACTCGACGAGGACCCGGAGCGATT
ATTCCAGGCGAGATTGCAGCAGTTTAACAGTCGAGTGCGAAGATGTTGCT
ACGTGCTGGACGACATTCCCGCATGGGCCGACCTCGGGCCGTACTGGTGA
TGCAGCAGTTTAACAGTCGAGTGCGAAGATGTTGCTACGTGCTGGACGAC
ATTCCCGCATGGGCCGACCTCGGGCCGTACTGGTGA
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