mRNA_H-elongata_contig73267.15005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73267.15005.1
Unique NamemRNA_H-elongata_contig73267.15005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: D7G6L2_ECTSI (CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L2_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.360e-54
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGK    VI KER+G Y GKTVQV+PH+TDEIQAWIERVA+IPV+GSN RPDVCLIEV
Sbjct:   71 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKVYQSVISKERKGEYLGKTVQVVPHITDEIQAWIERVAEIPVDGSNQRPDVCLIEV 174
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A835Z7S1_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.050e-50
Identity = 82/104 (78.85%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL VRLSRDHNITTG     VI KER+G + GKTVQV+PH+TDEIQ WIERVA  PV+GS   PDVCL+EV
Sbjct:   44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLSVRLSRDHNITTGTVYQEVILKERRGDHLGKTVQVVPHITDEIQDWIERVAVTPVDGSGCCPDVCLVEV 147
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 8.010e-49
Identity = 84/104 (80.77%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL VRLSRDHNITTGK    VI KER+G Y GKTVQV+PH+TDEIQ WIERVA  PV+GS   PDVCL+EV
Sbjct:   44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLSVRLSRDHNITTGKVYQEVILKERRGDYLGKTVQVVPHITDEIQDWIERVAVTPVDGSGCCPDVCLVEV 147
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A453F597_AEGTS (CTP_synth_N domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453F597_AEGTS)

HSP 1 Score: 161 bits (408), Expect = 1.950e-48
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEV+VLDDGGE DLDLGNYERFL ++L+RDHNITTGK    VI KER+G Y GKTVQV+PH+TDEIQ WIERVA  PV+G    PDVC+IE+
Sbjct:   67 NTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDHNITTGKVYQAVIDKERRGDYLGKTVQVVPHITDEIQDWIERVAIKPVDGKEGPPDVCVIEL 170
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A7S2WIW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WIW9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.410e-48
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGE FVL+DGGE DLDLGNYERFL V L++DHNITTGK  S VI +ER+G Y GKTVQV+PH+TDEIQ WI RVA IPV+G+   PDVCL+EV
Sbjct:   78 NTDAGTMSPFEHGETFVLNDGGETDLDLGNYERFLDVELTKDHNITTGKVYSTVIERERKGDYLGKTVQVVPHITDEIQNWIARVAQIPVDGTTKSPDVCLVEV 181
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A392NTP0_9FABA (CTP synthase-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NTP0_9FABA)

HSP 1 Score: 157 bits (398), Expect = 8.200e-48
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK    VI KER+G Y GKTVQV+PH+TD IQ WIERVA IPV+G     DVC+IE+
Sbjct:    4 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQDWIERVAKIPVDGKEGPADVCVIEL 107
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A6A5AYC2_9STRA (CTP synthase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AYC2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.820e-47
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            N DAGTMSPFEHGEVFVLDDGGE DLDLGNYERFLG+ L++DHNITTGK    VI +ER+G Y GKTVQV+PHVTD IQAWIERVA IPV+G +   D+CLIEV
Sbjct:   44 NCDAGTMSPFEHGEVFVLDDGGEGDLDLGNYERFLGITLTKDHNITTGKVYQQVIRRERRGDYLGKTVQVVPHVTDSIQAWIERVAQIPVDGDSTPADICLIEV 147
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A7S1G971_9STRA (CTP synthase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G971_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.430e-47
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            N DAGTMSPFEHGEVFVLDDGGEADLDLGNYERFL VRLSR+HNITTGK    VI  ER+G Y GKTVQ++PH+TD IQ WIERVA +PV+GS + PDVC+IEV
Sbjct:   60 NVDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLNVRLSREHNITTGKVYQQVISAERRGDYLGKTVQLIPHITDAIQDWIERVAHVPVDGSGMPPDVCMIEV 163
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: A0A452ZZ03_AEGTS (CTP_synth_N domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZZ03_AEGTS)

HSP 1 Score: 157 bits (398), Expect = 1.060e-46
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK    VI KER+G Y GKTVQV+PH+TDEIQ WIERVA  PV+G++   DVC+IE+
Sbjct:   78 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQAVINKERKGDYLGKTVQVVPHITDEIQDWIERVAMNPVDGTDKPADVCVIEL 181
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BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Match: B7FGK3_MEDTR (CTP_synth_N domain-containing protein (Fragment) n=1 Tax=Medicago truncatula TaxID=3880 RepID=B7FGK3_MEDTR)

HSP 1 Score: 157 bits (398), Expect = 1.200e-46
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 NTDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKA-S*VIFKERQGSYRGKTVQVLPHVTDEIQAWIERVADIPVEGSNIRPDVCLIEV 309
            NTDAGTMSPFEHGEVFVLDDGGE DLDLGNYERFL ++L+RD+NITTGK    V+ KER+G Y GKTVQV+PH+TD IQ WIERVA +PV+G     DVC+IE+
Sbjct:   44 NTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVVEKERRGDYLGKTVQVVPHITDAIQEWIERVAQVPVDGKEGPADVCVIEL 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73267.15005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L2_ECTSI1.360e-5487.50CTP synthase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z7S1_9STRA1.050e-5078.85CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835Z0Y6_9STRA8.010e-4980.77CTP synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A453F597_AEGTS1.950e-4875.00CTP_synth_N domain-containing protein n=2 Tax=Aegi... [more]
A0A7S2WIW9_9STRA3.410e-4875.00Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A392NTP0_9FABA8.200e-4874.04CTP synthase-like (Fragment) n=1 Tax=Trifolium med... [more]
A0A6A5AYC2_9STRA1.820e-4775.96CTP synthase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A7S1G971_9STRA7.430e-4776.92CTP synthase (Fragment) n=1 Tax=Bicosoecida sp. CB... [more]
A0A452ZZ03_AEGTS1.060e-4674.04CTP_synth_N domain-containing protein n=1 Tax=Aegi... [more]
B7FGK3_MEDTR1.200e-4672.12CTP_synth_N domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73267contigH-elongata_contig73267:156..1157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.2e-18
Seed eggNOG ortholog2880.D7G6L2
Preferred nameCTPS2
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001775,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009791,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0030097,GO:0032501,GO:0032502,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0035166,GO:0035167,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097268,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' CTP biosynthetic process
EggNOG OGsCOG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size309
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73267.15005.1prot_H-elongata_contig73267.15005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73267 174..720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.6748505-UTR-H-elongata_contig73267:155..1731622931134.6748505-UTR-H-elongata_contig73267:155..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 156..173 +
1691679712.5564175-UTR-H-elongata_contig73267:155..1731691679712.5564175-UTR-H-elongata_contig73267:155..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 156..173 +
1622931134.718356-UTR-H-elongata_contig73267:720..7981622931134.718356-UTR-H-elongata_contig73267:720..798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 721..798 +
1691679712.5988042-UTR-H-elongata_contig73267:720..7981691679712.5988042-UTR-H-elongata_contig73267:720..798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 721..798 +
1622931134.7346268-UTR-H-elongata_contig73267:1082..11571622931134.7346268-UTR-H-elongata_contig73267:1082..1157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 1083..1157 +
1691679712.6102252-UTR-H-elongata_contig73267:1082..11571691679712.6102252-UTR-H-elongata_contig73267:1082..1157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73267 1083..1157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.6884606-CDS-H-elongata_contig73267:173..3091622931134.6884606-CDS-H-elongata_contig73267:173..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73267 174..309 +
1691679712.5746639-CDS-H-elongata_contig73267:173..3091691679712.5746639-CDS-H-elongata_contig73267:173..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73267 174..309 +
1622931134.702658-CDS-H-elongata_contig73267:718..7201622931134.702658-CDS-H-elongata_contig73267:718..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73267 719..720 +
1691679712.5858283-CDS-H-elongata_contig73267:718..7201691679712.5858283-CDS-H-elongata_contig73267:718..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73267 719..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73267.15005.1

>prot_H-elongata_contig73267.15005.1 ID=prot_H-elongata_contig73267.15005.1|Name=mRNA_H-elongata_contig73267.15005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MSPFEHGEVFVLDDGGEADLDLGNYERFLGVRLSRDHNITTGKAS*
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mRNA from alignment at H-elongata_contig73267:156..1157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73267.15005.1 ID=mRNA_H-elongata_contig73267.15005.1|Name=mRNA_H-elongata_contig73267.15005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-elongata_contig73267:156..1157+ (Himanthalia elongata Himel1 dioecious)
AACACGGACGCCGGAACCATGTCTCCATTTGAGCACGGCGAAGTGTTTGT
GCTGGACGACGGCGGGGAGGCGGATTTGGATCTCGGCAATTACGAGAGGT
TTCTCGGCGTTCGTTTGTCGAGAGACCACAACATCACCACTGGCAAGGCA
AGCTGTTAGGATTTGCGCAACGTGGAGGTGTTTCGCGTCCCTAATGGTGG
AAGAAGCGCGACCATACATGTCTTCGCGTGTTGCCGTGCTCGTCTTGCGT
CTTTGCGTTATACACGTTGTAGATCATGTAAAATGTCGTTCGCCGTGCGC
AAGGCGCCTGTGTTAAGCGCACTACACACTTCTGGTAGATAAAAGGCAAC
GCCTGAGGAGCAATCAACCAACCGCATAACTGGTACAAACTGAATGTTCG
GTCGGGATTGAATCCAACTCTCTAGTGGGCCCGTCCAGCCTACCAACTGT
TTCGGTACTTGCAACCCTGCAGGCACGTGGGAATAAGGGTTCATGTGCGG
CTTAGACGTAGTTGCCACTCACTCTGCGCGTGGTGATGGCATGCTGTGGA
CAGGTGTACCAAGAAGTAATATTTAAGGAACGACAGGGAAGCTACCGGGG
CAAAACCGTGCAAGTTCTACCGCATGTGACGGACGAGATCCAGGTCAGGC
TGTTTGGTCTCGGAGTGCCCACATAGTCCTCGGTGTAAGGACTGCAGCTA
CACATTATCTAGATTAAATCAATCGTGTTTCAAGAATTCAACTTGATCGG
AAGGCTCCAAACAATCTGATTACTTTGTACTCGTTACCGTTGTTTTATAG
TAACATTGCGACTAGGGCAAATATCAGGGCGCACATTGCAGTGTACGCGT
AGCACCGTTCCTGAGCTACAATTTTGCGAGGTTTACTGACATGTATACCT
CGTCATTGGTGTTGGTGATCTACGCAGGCATGGATAGAGCGGGTCGCAGA
TATTCCCGTGGAAGGCTCTAACATCCGACCTGACGTGTGCCTCATCGAGG
TA
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Coding sequence (CDS) from alignment at H-elongata_contig73267:156..1157+

>mRNA_H-elongata_contig73267.15005.1 ID=mRNA_H-elongata_contig73267.15005.1|Name=mRNA_H-elongata_contig73267.15005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig73267:156..1157+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCCATTTGAGCACGGCGAAGTGTTTGTGCTGGACGACGGCGGGGA
GGCGGATTTGGATCTCGGCAATTACGAGAGGTTTCTCGGCGTTCGTTTGT
CGAGAGACCACAACATCACCACTGGCAAGGCAAGCTATGTCTCCATTTGA
GCACGGCGAAGTGTTTGTGCTGGACGACGGCGGGGAGGCGGATTTGGATC
TCGGCAATTACGAGAGGTTTCTCGGCGTTCGTTTGTCGAGAGACCACAAC
ATCACCACTGGCAAGGCAAGCTAAAA
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