mRNA_H-elongata_contig73252.15003.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: D8LER1_ECTSI (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER1_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 4.830e-151 Identity = 224/265 (84.53%), Postives = 240/265 (90.57%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLGVDV CSDTGCPPV ++A+GL GGT RVSGKISSQYLSALLMAAP SSGE V IEI DELVSAPYVHMTIKLM+KFGVK++NEGD RFT+ GQ+Y SPGTIAVEGDASSASYFLGGAAITGGPVTVRGCG+ SVQGDV+FAEVLEKMGATLTW N+MTVSR+ + PLRGVDVDCGEIPDAAMTLAVIALFA+GPT IRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYC+V PP VKP VAIDTYDDHRM + FSL
Sbjct: 218 QLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGE-VVIEITDELVSAPYVHMTIKLMDKFGVKVKNEGDMRFTIKDGQKYVSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGRDSVQGDVRFAEVLEKMGATLTWEANAMTVSRDLETPLRGVDVDCGEIPDAAMTLAVIALFAEGPTAIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCIVTPPKAVKPRVAIDTYDDHRM-AMCFSL 480
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S2XVK4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK4_9STRA) HSP 1 Score: 398 bits (1023), Expect = 6.670e-135 Identity = 206/265 (77.74%), Postives = 223/265 (84.15%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLGVDV CS TGCPPV V A G+ GG RVSGKISSQ+LSALLM AP + DV IEI DELVSAPYVHMTIKLM K+GV++ENE D FTV GQ+YTSPGTI VEGDASSASYFLGGAAITGGPVTV+GCG SVQGD+ FA+VL +MGA + WGPNS+TVSR + L+GVDVDCG IPDAAMTLAVIALFA+GPT IRNVYNWRVKETERMKAIVTEL KLGAEVEEGRDYCVV PP VK GVAIDTYDDHRM + FSL
Sbjct: 193 QLGVDVSCSGTGCPPVFVHAKGIEGGLTRVSGKISSQFLSALLMMAPLAKS-DVVIEITDELVSAPYVHMTIKLMAKYGVQVENENDMVFTVKAGQKYTSPGTIFVEGDASSASYFLGGAAITGGPVTVQGCGSESVQGDIDFAKVLGQMGADIEWGPNSITVSRKEGTKLKGVDVDCGSIPDAAMTLAVIALFAEGPTKIRNVYNWRVKETERMKAIVTELSKLGAEVEEGRDYCVVHPPEEVKAGVAIDTYDDHRM-AMCFSL 455
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A836CIT3_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT3_9STRA) HSP 1 Score: 385 bits (990), Expect = 1.660e-130 Identity = 206/271 (76.01%), Postives = 224/271 (82.66%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENE----GDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKP--PAMVKPGVAIDTYDDHRMVSQLFSL 795
QLGVDV CSDTGCPPV++ A+G+ GGTARVSGKISSQYLSALLMAAP + G DV IEI DELVSAPYV MT+KLM KFGV+ E G FTV GQRY SPGTIAVEGDASSASYFLGGAAITGGPV V GCG+GSVQGDV+FAEVLEKMGA LTW ++MTVSR L+GVDVDCG IPDAAMTLAVIALFA+GPT IRNVY WRVKETERMKAIV EL KLGA+VEEG DYC+V+P P +K GVAIDTYDDHRM + FSL
Sbjct: 143 QLGVDVTCSDTGCPPVRIAAAGIPGGTARVSGKISSQYLSALLMAAPLARG-DVTIEITDELVSAPYVSMTVKLMAKFGVQTEESVGANGAPVFTVRAGQRYVSPGTIAVEGDASSASYFLGGAAITGGPVRVVGCGRGSVQGDVQFAEVLEKMGAKLTWEEDAMTVSREPGVKLKGVDVDCGAIPDAAMTLAVIALFAEGPTAIRNVYTWRVKETERMKAIVAELTKLGADVEEGHDYCIVQPLAPGKMKSGVAIDTYDDHRM-AMCFSL 411
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A6V1NGJ7_HETAK (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NGJ7_HETAK) HSP 1 Score: 385 bits (988), Expect = 2.750e-130 Identity = 198/265 (74.72%), Postives = 219/265 (82.64%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLGVD+ SDTGCPPV ++A G+RGGT RVSGKISSQY+SALLM AP + G DV IEI DELVSAPYVHMTIKLM+K+GV++ENE D RFTV GGQ+Y SPG VEGDASSASYFL G AITGGPVTV GCG SVQGDV FA+VLE+MGAT+ WGPNS+TVSR L GVDVDCG IPDAAMTL V+ALF +GPT IRNVYNWRVKETERM A+VTEL KLGA EEGRDY +V P A +KPGVAIDTYDDHR V+ FSL
Sbjct: 142 QLGVDISVSDTGCPPVNIKARGVRGGTTRVSGKISSQYISALLMMAPLAQG-DVVIEIADELVSAPYVHMTIKLMKKYGVEVENEDDMRFTVRGGQKYVSPGVAYVEGDASSASYFLAGGAITGGPVTVHGCGAESVQGDVDFAKVLEQMGATVEWGPNSITVSRAPGQKLVGVDVDCGAIPDAAMTLGVVALFCEGPTAIRNVYNWRVKETERMVAMVTELTKLGARCEEGRDYLIVHPLADIKPGVAIDTYDDHR-VAMCFSL 404
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S1UKH8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH8_9STRA) HSP 1 Score: 382 bits (980), Expect = 1.300e-128 Identity = 190/264 (71.97%), Postives = 220/264 (83.33%), Query Frame = 1
Query: 4 LGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
L V++ECSDTGCPPV + A GL GGTA VSGKISSQYLSALLMAAP +SG D+ I+I+DELVSAPYVHMTIKL+EKFGVK++N+ D+ FT+ GQ+ SPGT VEGDASSASYFL G AITGGPVTV GCG SVQGD +FAEVL KMGA + W PNS+TVSR+ PL+GVD DCG+IPDAAMTLA +AL A+GPT +RNVYNWRVKETERM+AIV EL KLG E EEG DY VV PPA +KPGV+I+TYDDHR ++ +FSL
Sbjct: 177 LDVELECSDTGCPPVTINAKGLAGGTAEVSGKISSQYLSALLMAAPLASG-DITIKIKDELVSAPYVHMTIKLLEKFGVKVDNDSDRVFTIKAGQKLVSPGTAFVEGDASSASYFLAGGAITGGPVTVIGCGSESVQGDTRFAEVLGKMGAKVEWAPNSITVSRDMSTPLKGVDEDCGDIPDAAMTLATVALHAEGPTKVRNVYNWRVKETERMRAIVDELAKLGVETEEGEDYLVVHPPASIKPGVSIETYDDHR-IAMVFSL 438
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S2RGT1_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGT1_9STRA) HSP 1 Score: 366 bits (939), Expect = 4.450e-122 Identity = 185/258 (71.71%), Postives = 211/258 (81.78%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRM 774
QLG DV CSDTGCPPV + A L+GG AR+SGKISSQ+LSALLMAAP +SG DV +EI DELVSAPYV +T LM K+GV ++ + +F VPGGQ+Y+SPG + VEGDASSASYFL AITGGPV V GCG SVQGDV FA VLE MGA + W PN++TVSR+ L GVDVDCGEIPDAAMTLAV+ALFA GPT IRNVYNWR+KETERMKAIVTELGKLG EVEEGRD+CV++PP ++P VAIDTYDDHRM
Sbjct: 201 QLGADVTCSDTGCPPVHINAEPLKGGVARISGKISSQFLSALLMAAPLASG-DVTVEITDELVSAPYVMLTAGLMAKYGVDVD-VSELQFRVPGGQKYSSPGNVFVEGDASSASYFLALGAITGGPVKVIGCGSESVQGDVGFARVLESMGAKVEWEPNAITVSRDPDVELHGVDVDCGEIPDAAMTLAVVALFATGPTAIRNVYNWRLKETERMKAIVTELGKLGVEVEEGRDFCVIQPPKSIRPNVAIDTYDDHRM 456
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A5J4Z8J0_PORPP (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8J0_PORPP) HSP 1 Score: 363 bits (931), Expect = 5.610e-120 Identity = 186/266 (69.92%), Postives = 210/266 (78.95%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLG V CSDTGCPPV+V A+GL GG ARVSGKISSQYLSALLM AP + E V +EI+DELVS PYV MT+ LM++FGV +E N+ FT+P GQ Y SPGT+ VEGDASSASYF G AITGGP+ V GCG S+QGD+ F VLEKMGA + W NS+TVSR+ LRGVDVDCG+IPDAAMTLAV+ALFA G T IRNVYNWRVKETERMKAIVTEL KLGA VEEG DYC++ PPA + P VAIDTYDDHRM + FSL
Sbjct: 269 QLGAKVTCSDTGCPPVRVEANGLPGGVARVSGKISSQYLSALLMVAPLAKSE-VTLEIKDELVSVPYVLMTVNLMKRFGVHVEVNDEKTSFTIPAGQSYQSPGTVFVEGDASSASYFSAGGAITGGPMKVLGCGSESIQGDIDFTRVLEKMGAKVEWSANSITVSRDAGVKLRGVDVDCGDIPDAAMTLAVVALFADGKTAIRNVYNWRVKETERMKAIVTELRKLGAHVEEGHDYCIIDPPARINPDVAIDTYDDHRM-AMCFSL 532
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: R7QRX5_CHOCR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX5_CHOCR) HSP 1 Score: 357 bits (915), Expect = 1.190e-118 Identity = 189/268 (70.52%), Postives = 212/268 (79.10%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVR--ASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLG DVECSDTGCPPV++R +GL GG ARVSGKISSQYLSALL+AAP ++ EDV I I DELVS PYV MTI LM KFGV ++ +EG+ F V GQ+Y SPG VEGDASSASYFL GAAITGGPVTVRGCG SVQGDV FA ++ MGA + W NS+TVSR L+GVDVDC +IPDAAM+LA ALFA+GPT IRNVYNWRVKETERMKAIVTEL KLGAEVEEGRDYCV+ PP ++ V IDTYDDHRM + FSL
Sbjct: 182 QLGADVECSDTGCPPVRIRNTEAGLPGGVARVSGKISSQYLSALLIAAPMAN-EDVTIRITDELVSVPYVKMTINLMNKFGVDVQVDEGNTEFVVKKGQQYVSPGEYFVEGDASSASYFLAGAAITGGPVTVRGCGSESVQGDVDFARIMGLMGAKVEWEANSITVSREPGTKLKGVDVDCVDIPDAAMSLATTALFAEGPTAIRNVYNWRVKETERMKAIVTELRKLGAEVEEGRDYCVIHPPKTIRENVPIDTYDDHRM-AMAFSL 447
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A813CZ13_POLGL (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813CZ13_POLGL) HSP 1 Score: 353 bits (905), Expect = 2.420e-117 Identity = 193/281 (68.68%), Postives = 216/281 (76.87%), Query Frame = 1
Query: 1 QLGVDVECSDT----GCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEG---DK-----RFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNK--KFPLRGVDVDCGEIPDAAMTLAVIALFAQG--PTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLG VEC+ GCPPV+V A G+ GG +SGKISSQY+S+LLMAAP + V IE++DELVS PYV MTI LM++FGV +E E DK R+TV GGQ Y SPGT VEGDAS ASYFLGGAAITGGPVTV GCG SVQGD+KFA VLE+MG T+ W PNS+TVSR PL+GVDVDCGEIPDAAMTL VIALFAQ PT +RNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYC+V+P A +KP V IDTYDDHRM + FSL
Sbjct: 153 QLGSPVECTQNPPYGGCPPVRVDADGIEGGKCVISGKISSQYISSLLMAAPLAKTGPVIIEVKDELVSKPYVDMTIGLMKQFGVIVEVEELSEDKNAPRPRYTVRGGQCYVSPGTYYVEGDASGASYFLGGAAITGGPVTVEGCGSTSVQGDIKFANVLEQMGCTVEWKPNSITVSRKTDGSQPLKGVDVDCGEIPDAAMTLTVIALFAQDGKPTAVRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCIVQPLASIKPNVLIDTYDDHRM-AMCFSL 432
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A2V3J3T4_9FLOR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T4_9FLOR) HSP 1 Score: 348 bits (894), Expect = 1.620e-115 Identity = 185/267 (69.29%), Postives = 213/267 (79.78%), Query Frame = 1
Query: 1 QLGVDVECSDTGCPPVKVR-ASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
QLG DVECS+TGCPPV +R +SGL GG A VSGKISSQYLSALLMAAP + +DV I I+D LVS PYV MTI LM ++GV+++ N+ +FT+ Q+Y SPG + VEGDASSASYFL GAAITGG VTV GCG S+QGDV FA VLE+MGA + W NS+TVSR LRGVDVDCG+IPDAAM+LA ALFA+G T IRNVYNWRVKETERMKAIVTEL KLGA+VEEG DYCV+ PP ++KP VAIDTYDDHRM + FSL
Sbjct: 183 QLGADVECSNTGCPPVTIRNSSGLPGGEAYVSGKISSQYLSALLMAAPLAK-KDVTIIIKDTLVSVPYVKMTINLMARYGVRVDVNQQYTQFTIASQQQYKSPGQVFVEGDASSASYFLAGAAITGGAVTVSGCGSDSIQGDVDFARVLEQMGAQVEWEKNSITVSRETGTELRGVDVDCGDIPDAAMSLATTALFAKGQTAIRNVYNWRVKETERMKAIVTELRKLGADVEEGYDYCVITPPGVIKPEVAIDTYDDHRM-AMAFSL 447 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73252.15003.1 >prot_H-elongata_contig73252.15003.1 ID=prot_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSback to top mRNA from alignment at H-elongata_contig73252:182..2930- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73252.15003.1 ID=mRNA_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2749bp|location=Sequence derived from alignment at H-elongata_contig73252:182..2930- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73252:182..2930- >mRNA_H-elongata_contig73252.15003.1 ID=mRNA_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig73252:182..2930- (Himanthalia elongata Himel1 dioecious)back to top |