mRNA_H-elongata_contig73167.14994.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73167.14994.1
Unique NamemRNA_H-elongata_contig73167.14994.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: D7G0Q0_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QMFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGV 117
            ++FMFGGYGG+GRLDDFWEFDF +R+WKEV C GPSPGV
Sbjct:   44 KLFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGV 82
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A7J6SJ80_PEROL (Leucine-zipper-like transcriptional regulator 1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJ80_PEROL)

HSP 1 Score: 67.0 bits (162), Expect = 3.210e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 MFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGVRENNGVVEYKGSLY 159
            +++ GGYGG+GRLDD ++FDF TR+W +V   G +P  RENNG V  K ++Y
Sbjct:  104 LYVLGGYGGSGRLDDLFKFDFNTRLWSQVHTKGETPTGRENNGAVVIKNNMY 155
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: F0YL40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL40_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.710e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 QMFMFGGYGGTGRLDDFWEFDFGTRVWKEVQ-CHGPSPGVRENNGVVEYKGSLY 159
             M++FGGYGG GRLDDF  FD     W  V+   G +PG+RENNG++E++G LY
Sbjct:   31 HMYIFGGYGGGGRLDDFHCFDLDNTRWSCVEPSSGLTPGMRENNGLIEFRGKLY 84
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A835YYB0_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.300e-9
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 QMFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGP 105
            +M+MFGGYGG+GRLDDF+EFDF TRVW+ ++  GP
Sbjct:   58 KMYMFGGYGGSGRLDDFFEFDFDTRVWRRLEYSGP 92
[Close]
BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A7J6PHS8_PEROL (Leucine-zipper-like transcriptional regulator 1 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PHS8_PEROL)

HSP 1 Score: 61.2 bits (147), Expect = 3.360e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   22 YGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGVRENNGVVEYKGSLY 159
            YGG+GRLDD ++FDF TR+W +V   G +P  RENNG V  K ++Y
Sbjct:  241 YGGSGRLDDLFKFDFNTRLWSQVHTKGETPTGRENNGAVVIKNNMY 286
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A7S2PEB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PEB9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.390e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QMFMFGGYGG-TGRLDDFWEFDFGTRVWKEVQCHGP-SPGVRENNGVV 138
            +++MFGGYGG TGRLDDF++F F +  W EV+      PG RENNGVV
Sbjct:  103 RLYMFGGYGGGTGRLDDFYQFSFDSNTWSEVEVLSDVKPGCRENNGVV 150
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A2R5GK91_9STRA (Kelch domain-containing protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK91_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.190e-9
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 QMFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGP---SPGVRENNGVVEYKGSLY 159
            ++++FGGYGG  RLDDF+E+ F +RVW+ ++   P   +PG RENNG V +   LY
Sbjct:   73 KLYVFGGYGGEKRLDDFYEYCFISRVWRRIELDEPRAQTPGPRENNGFVTFGKCLY 128
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BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A6U6MZ52_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6MZ52_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 8.440e-9
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 MFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGVRENNG 132
            +++FGGYGG+GRLDD + FDF TR W +V   G  P  RENNG
Sbjct:   60 LYVFGGYGGSGRLDDIFRFDFQTRCWAQVHAQGSVPVGRENNG 102
[Close]
BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A812JMV1_9DINO (Lztr1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812JMV1_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 4.070e-8
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 MFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGVRENNGVV 138
            +++FGGYGG+GRLDD + F+F +R W  ++  G  P  RENNG V
Sbjct:   29 LYVFGGYGGSGRLDDIYRFNFPSRYWTRLEVQGTVPAGRENNGAV 73
[Close]
BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Match: A0A1Z5J8G5_FISSO (BTB domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8G5_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 1.410e-7
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QMFMFGGYGG-TGRLDDFWEFDFGTRVWKEVQCHGP-SPGVRENNGVV 138
            ++++FGGYGG TGRLDDF+ +DF +  W+EV       PG RENNGVV
Sbjct:   65 KLYVFGGYGGGTGRLDDFYSYDFESNEWQEVHVLSEYRPGCRENNGVV 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73167.14994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q0_ECTSI1.380e-1579.49BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7J6SJ80_PEROL3.210e-1251.92Leucine-zipper-like transcriptional regulator 1 (F... [more]
F0YL40_AURAN3.710e-1053.70Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YYB0_9STRA3.300e-968.57BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7J6PHS8_PEROL3.360e-954.35Leucine-zipper-like transcriptional regulator 1 n=... [more]
A0A7S2PEB9_9STRA5.390e-958.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A2R5GK91_9STRA6.190e-948.21Kelch domain-containing protein 10 n=1 Tax=Hondaea... [more]
A0A6U6MZ52_9DINO8.440e-958.14Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
A0A812JMV1_9DINO4.070e-851.11Lztr1 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A1Z5J8G5_FISSO1.410e-756.25BTB domain-containing protein n=2 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73167contigH-elongata_contig73167:2090..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog44056.XP_009041123.1
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-09_001240.1
Exons2
Model size225
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73167.14994.1prot_H-elongata_contig73167.14994.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73167 2093..2970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.34966-UTR-H-elongata_contig73167:2089..20921622931133.34966-UTR-H-elongata_contig73167:2089..2092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73167 2090..2092 +
1691679711.931826-UTR-H-elongata_contig73167:2089..20921691679711.931826-UTR-H-elongata_contig73167:2089..2092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73167 2090..2092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.3659174-CDS-H-elongata_contig73167:2092..21561622931133.3659174-CDS-H-elongata_contig73167:2092..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73167 2093..2156 +
1691679711.944232-CDS-H-elongata_contig73167:2092..21561691679711.944232-CDS-H-elongata_contig73167:2092..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73167 2093..2156 +
1622931133.380929-CDS-H-elongata_contig73167:2812..29701622931133.380929-CDS-H-elongata_contig73167:2812..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73167 2813..2970 +
1691679711.9530191-CDS-H-elongata_contig73167:2812..29701691679711.9530191-CDS-H-elongata_contig73167:2812..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73167 2813..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73167.14994.1

>prot_H-elongata_contig73167.14994.1 ID=prot_H-elongata_contig73167.14994.1|Name=mRNA_H-elongata_contig73167.14994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MFMFGGYGGTGRLDDFWEFDFGTRVWKEVQCHGPSPGVRENNGVVEYKGS
LYLFGGYNGSQWLNDFHGFHIGE*
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mRNA from alignment at H-elongata_contig73167:2090..2970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73167.14994.1 ID=mRNA_H-elongata_contig73167.14994.1|Name=mRNA_H-elongata_contig73167.14994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=881bp|location=Sequence derived from alignment at H-elongata_contig73167:2090..2970+ (Himanthalia elongata Himel1 dioecious)
CAGATGTTTATGTTTGGAGGCTATGGTGGCACAGGGAGACTGGATGACTT
CTGGGAGTTCGATTTTGGTGAGGCCATGTTCCGAAGCTTTCTCTTAGTTA
CAGTGTCAAACTCTACTTAGTGTTAGGGGGTTTGGAAGAATTAAAATAGC
AGAAGTTGGGGGGGTTCCGTTTGAGGAGGCGTTTTCTAATTTTAAATATT
ACCACTCTCATGATTCTTTCAAGATATAGCCAGGGCTCACGGAAAGCGTC
GAGACAACGGTAGTCGACACCTTTGGTATCTGGTGCTTCATGTTCTATAT
GTGTAGGAAAAGGCACGCTATTTATTTTATTTTTTCGGGTGAAGATATCT
TCGACTGCAATCATCCTGTCACCTTACCGGGCATGTTTCCTTTCCCGTAA
GGCCGGGTCTTATCAGAACACAAAAGTTTAAATTTCCAGCCGATTTAAAT
TTAAATCGGGCTCTGATTGGTCGAAAGCAAATAACGTTTAGCCTTTGTCC
AATCAGAGCCCGTTTTAAATTTAAATCGGCTGAAAATTTATTTTTTTGTG
CTCTGATAAGACCCGGCCTAACCGCCGTAATTTGTAATATCCTTTATAGA
GAGTAATGTGACCCGAGATAGCGTACAGTTAGAGGGGGAGGATGATCGTC
GTGTTCGATTTTTGGTCCACAAGTGGTAGAACAGCACCCTTTTACGCCGC
AGCATACACCGCCGAATCTCCAGGAACGCGGGTGTGGAAGGAGGTGCAGT
GTCACGGACCGTCTCCGGGGGTGCGGGAAAATAATGGTGTGGTGGAGTAC
AAGGGGTCGCTGTATCTCTTCGGGGGTTATAATGGCTCGCAGTGGCTCAA
CGACTTCCACGGATTTCATATCGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73167:2090..2970+

>mRNA_H-elongata_contig73167.14994.1 ID=mRNA_H-elongata_contig73167.14994.1|Name=mRNA_H-elongata_contig73167.14994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig73167:2090..2970+ (Himanthalia elongata Himel1 dioecious)
ATGTTTATGTTTGGAGGCTATGGTGGCACAGGGAGACTGGATGACTTCTG
GGAGTTCGATTTTGATGTTTATGTTTGGAGGCTATGGTGGCACAGGGAGA
CTGGATGACTTCTGGGAGTTCGATTTTGGAACGCGGGTGTGGAAGGAGGT
GCAGTGTCACGGACCGTCTCCGGGGGTGCGGGAAAATAATGGTGTGGTGG
AGTACAAGGGGTCGCTGTATCTCTTCGGGGGTTATAATGGCTCGCAGTGG
CTCAACGACTTCCACGGATTTCATATCGGTGAGTGAGAACGCGGGTGTGG
AAGGAGGTGCAGTGTCACGGACCGTCTCCGGGGGTGCGGGAAAATAATGG
TGTGGTGGAGTACAAGGGGTCGCTGTATCTCTTCGGGGGTTATAATGGCT
CGCAGTGGCTCAACGACTTCCACGGATTTCATATCGGTGAGTGA
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