mRNA_H-elongata_contig119464.1499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119464.1499.1
Unique NamemRNA_H-elongata_contig119464.1499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 5.580e-42
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    4 VMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            VMSG LKWG VHTEKFWREQARKFE DEFFILKQLIELLKSEDKSVV+IACYDLGEFVRFYPSGKTI +HLG
Sbjct:    3 VMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 74
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.260e-38
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +VMSGQLKWG VHTEKFWREQARKFE DEFFILKQLIELLKSEDKSVV+IACYDLGEFVRFYPSGKTI +HLG
Sbjct:  413 EVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 485
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.900e-28
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +V SG+L+WGVVHTE+FWRE AR  E D+F +++ LI LL+SED++VVAIACYDLGEFVRFYP+GK I +HLG
Sbjct:  350 EVRSGRLRWGVVHTERFWRENARATEADDFALIRALIGLLRSEDETVVAIACYDLGEFVRFYPTGKAILKHLG 422
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.260e-27
Identity = 48/73 (65.75%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +V S QLKWG+VH EKFWRE A++ E +EF +LK+LIELL+S+D  VV++ACYDLGEFVRFYP+GK+I ++LG
Sbjct:  341 EVKSKQLKWGLVHQEKFWRENAKELEVNEFALLKELIELLRSDDPEVVSVACYDLGEFVRFYPNGKSIVKNLG 413
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN)

HSP 1 Score: 101 bits (251), Expect = 3.820e-26
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSE-DKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +V SG L WG+VHT+KFWRE AR  E D+F ++K L++LL  + D +VV+IACYD+GEFVRFYP+GK + +HLG
Sbjct:    9 EVRSGDLAWGLVHTDKFWRENARAAEADDFALIKLLVQLLDGDRDPTVVSIACYDVGEFVRFYPNGKAVVKHLG 82
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 105 bits (263), Expect = 3.000e-25
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +V SGQL+WG+VH+EKFW+E  R  E D+F +LK LI LL SED+ VVAIACYD+GEF RFYP+G++I +  G
Sbjct:  335 EVASGQLRWGIVHSEKFWKENVRSLEADDFKVLKSLISLLASEDEEVVAIACYDIGEFARFYPNGRSIVKLFG 407
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.730e-24
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 QVMSGQLKWG-VVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +VMS +LKWG +VH EKFWRE AR  E ++F +LK LI LLKSED  VV++ACYDLGEFVRFYP+G++I ++LG
Sbjct:  334 EVMSRRLKWGSLVHEEKFWRENARCLEDNDFELLKALIGLLKSEDNEVVSVACYDLGEFVRFYPNGRSIVKNLG 407
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A7S2V6V1_9STRA (V-type proton ATPase subunit H n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.220e-23
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTI 204
            +V SGQLKWG+ HTEKFWR   R  E D+F +LKQL ELL S D+ VV+IACYD+GEFVRFYP+GK++
Sbjct:  353 EVRSGQLKWGLCHTEKFWRNNVRSMEADDFALLKQLGELLGSADEEVVSIACYDIGEFVRFYPNGKSL 420
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A1W0A553_9STRA (V-type proton ATPase subunit H n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A553_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.680e-22
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            ++ +G L WG++HT+KFWRE    FET EF +++ LI+LL+SED   VA+A YDLG+FVRFYP+GK IA+ LG
Sbjct:  351 ELRTGALNWGLLHTDKFWRENYMSFETKEFELIRLLIDLLESEDPKTVAVALYDLGDFVRFYPNGKHIAKRLG 423
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BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Match: A0A024U5Q7_9STRA (V-type proton ATPase subunit H n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5Q7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.910e-22
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 QVMSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIACYDLGEFVRFYPSGKTIARHLG 219
            +V +G L WG++HTEKFWRE    FE +EF +++ LI+LL+S+D   V++A YDLG+FVRFYP+GK IA+ LG
Sbjct:  353 EVRTGSLAWGLLHTEKFWRENVMSFEANEFELIRLLIDLLESDDPKTVSVALYDLGDFVRFYPNGKHIAKRLG 425
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119464.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH73_ECTSI5.580e-4291.67V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LCE7_9PHAE1.260e-3891.78V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A835Z9Q6_9STRA4.900e-2868.49V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
A0A7S2H8Z8_9STRA6.260e-2765.75V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
F0XWY7_AURAN3.820e-2659.46V-ATPase_H_C domain-containing protein (Fragment) ... [more]
I2CP76_NANGC3.000e-2561.64V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A7S2SKW2_9STRA7.730e-2464.86V-type proton ATPase subunit H n=1 Tax=Rhizochromu... [more]
A0A7S2V6V1_9STRA1.220e-2366.18V-type proton ATPase subunit H n=1 Tax=Fibrocapsa ... [more]
A0A1W0A553_9STRA5.680e-2257.53V-type proton ATPase subunit H n=1 Tax=Thraustothe... [more]
A0A024U5Q7_9STRA7.910e-2256.16V-type proton ATPase subunit H n=11 Tax=Aphanomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119464contigH-elongata_contig119464:88..1066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue2.9e-31
Seed eggNOG ortholog2880.D7FH73
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, V1 complex, subunit H, C-terminal
Ec32 orthologEc-00_000200.1
Exons2
Model size222
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119464.1499.1prot_H-elongata_contig119464.1499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119464 94..1066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.0581806-UTR-H-elongata_contig119464:87..931622929699.0581806-UTR-H-elongata_contig119464:87..93Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119464 88..93 +
1691679123.5015233-UTR-H-elongata_contig119464:87..931691679123.5015233-UTR-H-elongata_contig119464:87..93Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119464 88..93 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.074775-CDS-H-elongata_contig119464:93..1921622929699.074775-CDS-H-elongata_contig119464:93..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119464 94..192 +
1691679123.5119526-CDS-H-elongata_contig119464:93..1921691679123.5119526-CDS-H-elongata_contig119464:93..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119464 94..192 +
1622929699.1022022-CDS-H-elongata_contig119464:949..10661622929699.1022022-CDS-H-elongata_contig119464:949..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119464 950..1066 +
1691679123.5215206-CDS-H-elongata_contig119464:949..10661691679123.5215206-CDS-H-elongata_contig119464:949..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119464 950..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119464.1499.1

>prot_H-elongata_contig119464.1499.1 ID=prot_H-elongata_contig119464.1499.1|Name=mRNA_H-elongata_contig119464.1499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MSGQLKWGVVHTEKFWREQARKFETDEFFILKQLIELLKSEDKSVVAIAC
YDLGEFVRFYPSGKTIARHLG*
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mRNA from alignment at H-elongata_contig119464:88..1066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119464.1499.1 ID=mRNA_H-elongata_contig119464.1499.1|Name=mRNA_H-elongata_contig119464.1499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=979bp|location=Sequence derived from alignment at H-elongata_contig119464:88..1066+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATGTCTGGCCAACTCAAATGGGGTGTGGTCCACACGGAAAAGTT
CTGGAGAGAGCAGGCCAGAAAGTTCGAGACCGACGAGTTTTTCATCCTTA
AGCAGGTGGGGGTGCAAGAGGGCGTTCTTATCGAATCCGTTTGACATGCC
CCTAACGTGGTGAATAACAGTCCCGGCACAGTCCCGTCGTGGCGCGGGTA
GGATTTTCGTCTAAACTTGAAGATGATTTTGTGGCAACTGCGGATACGTG
GAAAATTTTAGTGAACGAAAATCAATGAAATCAACGGTTCAATTTTAAGC
CCGATGAAAAAATAACTCTCGAGCCACGAGCGTCAACCGTTTCCCATAAA
TATCCACGAGGTATACAGTAGTTAGGATTTTGATTTTGTCCCTTTTGCTT
TAGATGGTACAAAATAGATAGGCAGACATTCCCTGCAATGTTACCGTATT
GTTTTTTATGTGCGGAAGAAGGCGTGTTTTGTCCGGTGACCAAAAGGGAA
AGGGAAAAGTGTCTCATATCTCGGCGTCAGTCGCCATCGTGCCAATGTGT
TGATTTTTTTCGTCCCACTCTCCGTGATGAGGCCCGCCATTCAACGGTCA
CTTCACAAGCGCCAAGCGCAAATCACTTTTAATTTTTCGCACTTTCCAAA
AACGAACCGGTAACCAGATTTTATTTTGTTTTTTACTTTTTATCTTGTTT
TTGAGCTTCCCGCCGCGTTTAACGGCGATATCACGCCTGATAAAGCCATA
CCCCGTGACATACCAACGCGTGGCGTTCGACGCCTGCTGGGAAGGCCTTT
GTCGCTAGGGGCTTGGTCTCTTAACGCCCTCTCTTGTCCTGTGCGTCCCG
GACGGAGGTCAGCTGATCGAGCTGCTCAAGTCGGAAGACAAGAGCGTGGT
TGCCATCGCGTGCTACGATCTCGGAGAGTTTGTCCGCTTCTACCCCAGCG
GAAAGACCATTGCTCGCCACTTAGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig119464:88..1066+

>mRNA_H-elongata_contig119464.1499.1 ID=mRNA_H-elongata_contig119464.1499.1|Name=mRNA_H-elongata_contig119464.1499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig119464:88..1066+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGGCCAACTCAAATGGGGTGTGGTCCACACGGAAAAGTTCTGGAG
AGAGCAGGCCAGAAAGTTCGAGACCGACGAGTTTTTCATCCTTAAGCAGA
TGTCTGGCCAACTCAAATGGGGTGTGGTCCACACGGAAAAGTTCTGGAGA
GAGCAGGCCAGAAAGTTCGAGACCGACGAGTTTTTCATCCTTAAGCAGCT
GATCGAGCTGCTCAAGTCGGAAGACAAGAGCGTGGTTGCCATCGCGTGCT
ACGATCTCGGAGAGTTTGTCCGCTTCTACCCCAGCGGAAAGACCATTGCT
CGCCACTTAGGGTAACTGATCGAGCTGCTCAAGTCGGAAGACAAGAGCGT
GGTTGCCATCGCGTGCTACGATCTCGGAGAGTTTGTCCGCTTCTACCCCA
GCGGAAAGACCATTGCTCGCCACTTAGGGTAA
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