mRNA_H-elongata_contig73104.14987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73104.14987.1
Unique NamemRNA_H-elongata_contig73104.14987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A8F0FDB5_9PHAE (Uncharacterized protein n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDB5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.020e-11
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  101 LSLLPPNLAIGSPLIMVIYKDLKDLQTNILAFSSQIDCVGISIKNK 238
            L L PP LA+G PL+MVIY++L+D QTN    +SQIDC+GISIKN+
Sbjct:   52 LYLAPPKLALGYPLLMVIYENLEDFQTNAPEVASQIDCLGISIKNE 97
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BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A4D6E6F0_9PHAE (Uncharacterized protein n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E6F0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.300e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:  101 LSLLPPNLAIGSPLIMVIYKDLKDLQTNILAFSSQIDCVGISIKNK 238
            L L PP L IG P+IM++YK+LKDLQTN+   + Q+DC+G+SI  K
Sbjct:   52 LYLNPPKLGIGCPIIMIVYKNLKDLQTNVPEIALQLDCLGVSIDKK 97
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A1I9LWA1_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LWA1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.490e-10
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:   83 NRLNFILSLLPPNLAIGSPLIMVIYKDLKDLQTNILAFSSQIDCVGISIKNK 238
            N  +  L L PP +AIG PLIM+IY +L+DLQ N+    S+IDC+G+SI  K
Sbjct:   48 NLYSIPLFLAPPKVAIGYPLIMIIYNNLEDLQANLTKIPSEIDCIGLSINKK 99
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BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A4D6E4R6_9PHAE (Uncharacterized protein n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4R6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.110e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  101 LSLLPPNLAIGSPLIMVIYKDLKDLQTNILAFSSQIDCVGISIKNK 238
            L L PP L IG P+IM+IYK L DLQTN+   + Q+DC+GISI+ K
Sbjct:   52 LYLKPPKLGIGCPIIMIIYKTLGDLQTNVPEIALQLDCLGISIEKK 97
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A8F0FD44_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FD44_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.920e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  101 LSLLPPNLAIGSPLIMVIYKDLKDLQTNILAFSSQIDCVGISIKNK 238
            L L PP L +G PLIMV+YK L++LQTN+   + QIDC+GISI  K
Sbjct:   52 LYLTPPKLGLGCPLIMVVYKTLQNLQTNVPEIALQIDCLGISIDKK 97
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BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: E6ZER5_ECTSI (Conserved hypothetical mitochondrial protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER5_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-8
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 LTHQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQP 123
            L+ QKTFALFNASNLKTSKI +++L +K+AKLYFIP    P
Sbjct:   16 LSKQKTFALFNASNLKTSKITEIRLFLKNAKLYFIPLYLNP 56
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A5K1KEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A5K1KEM9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.260e-8
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 LTHQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQP 123
            L+ QKTFALFNASNLKTSKI +++L +K+AKLYFIP    P
Sbjct:   16 LSKQKTFALFNASNLKTSKITEIRLSLKNAKLYFIPLYLNP 56
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A2R4QQ51_9PHAE (Uncharacterized protein n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ51_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.870e-8
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 HQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQP 123
            +++TFA+FNASNLKTSKI+K+KL+ KS KLYF+P    P
Sbjct:   19 NEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPLYLMP 57
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A8F0K1C4_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0K1C4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.120e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LTHQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQP 123
            L  Q+TFALFN SNLKTS+I K++L++++AKLYF+P    P
Sbjct:   16 LPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYFVPLYLNP 56
[Close]
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Match: A0A3G5FPR1_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPR1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.480e-6
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LTHQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQP 123
            L  +KTFALFNASNLKTSK++++KL ++ AKLY +P   +P
Sbjct:   16 LPKEKTFALFNASNLKTSKVEEIKLSLQKAKLYHVPLYLKP 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73104.14987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A8F0FDB5_9PHAE9.020e-1163.04Uncharacterized protein n=1 Tax=Analipus japonicus... [more]
A0A4D6E6F0_9PHAE5.300e-1056.52Uncharacterized protein n=2 Tax=Laminariaceae TaxI... [more]
A0A1I9LWA1_9PHAE7.490e-1051.92Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A4D6E4R6_9PHAE2.110e-958.70Uncharacterized protein n=1 Tax=Nereocystis luetke... [more]
A0A8F0FD44_9PHAE2.920e-958.70Uncharacterized protein n=4 Tax=Alariaceae TaxID=2... [more]
E6ZER5_ECTSI1.130e-868.29Conserved hypothetical mitochondrial protein n=1 T... [more]
A0A5K1KEM9_ECTSI2.260e-868.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R4QQ51_9PHAE6.870e-864.10Uncharacterized protein n=3 Tax=Fucus TaxID=3011 R... [more]
A0A8F0K1C4_9PHAE6.120e-758.54Uncharacterized protein n=2 Tax=Ecklonia TaxID=105... [more]
A0A3G5FPR1_9PHAE1.480e-658.54Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73104contigH-elongata_contig73104:1043..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size238
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.636573-CDS-H-elongata_contig73104:1042..12011622931132.636573-CDS-H-elongata_contig73104:1042..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73104 1043..1201 +
1691679711.640344-CDS-H-elongata_contig73104:1042..12011691679711.640344-CDS-H-elongata_contig73104:1042..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73104 1043..1201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.6525512-UTR-H-elongata_contig73104:1201..12801622931132.6525512-UTR-H-elongata_contig73104:1201..1280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73104 1202..1280 +
1691679711.6511161-UTR-H-elongata_contig73104:1201..12801691679711.6511161-UTR-H-elongata_contig73104:1201..1280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73104 1202..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73104.14987.1prot_H-elongata_contig73104.14987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73104 1043..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73104.14987.1

>prot_H-elongata_contig73104.14987.1 ID=prot_H-elongata_contig73104.14987.1|Name=mRNA_H-elongata_contig73104.14987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
LTHQKTFALFNASNLKTSKIQKLKLIVKSAKLYFIPFTSQPCHRIPINNG
NL*
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mRNA from alignment at H-elongata_contig73104:1043..1280+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73104.14987.1 ID=mRNA_H-elongata_contig73104.14987.1|Name=mRNA_H-elongata_contig73104.14987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=238bp|location=Sequence derived from alignment at H-elongata_contig73104:1043..1280+ (Himanthalia elongata Himel1 dioecious)
TTAACTCACCAAAAAACCTTTGCACTTTTTAATGCAAGTAACTTAAAAAC
GTCTAAAATCCAAAAACTAAAATTGATAGTAAAATCGGCTAAACTTTATT
TTATCCCTTTTACCTCCCAACCTTGCCATCGGATCCCCATTAATAATGGT
AATTTATAAAGATTTAAAAGATTTACAAACTAATATTTTAGCTTTCTCTT
CACAAATAGATTGTGTTGGGATATCAATTAAAAATAAG
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Coding sequence (CDS) from alignment at H-elongata_contig73104:1043..1280+

>mRNA_H-elongata_contig73104.14987.1 ID=mRNA_H-elongata_contig73104.14987.1|Name=mRNA_H-elongata_contig73104.14987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig73104:1043..1280+ (Himanthalia elongata Himel1 dioecious)
TTAACTCACCAAAAAACCTTTGCACTTTTTAATGCAAGTAACTTAAAAAC
GTCTAAAATCCAAAAACTAAAATTGATAGTAAAATCGGCTAAACTTTATT
TTATCCCTTTTACCTCCCAACCTTGCCATCGGATCCCCATTAATAATGGT
AATTTATAATTAACTCACCAAAAAACCTTTGCACTTTTTAATGCAAGTAA
CTTAAAAACGTCTAAAATCCAAAAACTAAAATTGATAGTAAAATCGGCTA
AACTTTATTTTATCCCTTTTACCTCCCAACCTTGCCATCGGATCCCCATT
AATAATGGTAATTTATAA
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