prot_H-elongata_contig73041.14982.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73041.14982.1
Unique Nameprot_H-elongata_contig73041.14982.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length293
Homology
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.040e-84
Identity = 128/215 (59.53%), Postives = 161/215 (74.88%), Query Frame = 0
Query:   64 PDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 274
            PD E  GC T+TD Y   +E  G + KGPI+ LDD+   + +P  ++ KW LT+ L +  G++FYCRG+SIGGDCDELRIQST  T+++E+R HGGS+YFE T+VTSW T NKTPQ     GRSF+NCVSE  + E C  Q+++  GECRMDII+SE+GYLG+ DS+SYGLTWK RGFC D +NP+VFDTTNVYG +  SDIHH YY  YSYG+Q
Sbjct:   80 PDAEGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQ 293          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 3.050e-82
Identity = 131/241 (54.36%), Postives = 165/241 (68.46%), Query Frame = 0
Query:   59 SFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR---------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 286
            + VV  D E  GC T+TD Y         + KGP+Y+LD +   + +PTSVT KW L + L+V  G+IFYC G+  GGDCDELRIQST   ++ E+RGHGGS+YF  T+VTSW T NK PQ+    GRSF+NCVSE  + ETC+  +K++ GECRMDII+SEMGY+G+ DS+SYGLTWK R         GFC D +NP+VF+TTNVYG I NSDIHHMYY  YSYG+Q     +WT   +
Sbjct:   10 AIVVHTDAESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQ---GGVWTNNEM 247          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 3.810e-79
Identity = 131/255 (51.37%), Postives = 169/255 (66.27%), Query Frame = 0
Query:   38 LKSYSESCGPFFYLSCHDFTTSFVVDPDL--EDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 286
            L   S SCG         +  S  V   L  E  GC TMTD Y         + KGP+Y+LDD+   +  P+ +T  W L + L++  G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+    GRSF+NCVSE  + + CE  +K+  GECRMDII+SE+ YLG+ DS+SYG+TWK RGFC D +NPEVF+ TNVYG +T SDIHH+YY  YSYG+Q     +WT   +
Sbjct:  414 LMEISSSCGDDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQ---GGVWTNNKM 665          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 2.430e-78
Identity = 120/225 (53.33%), Postives = 156/225 (69.33%), Query Frame = 0
Query:   74 MTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR--------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 286
            MTD Y         + KGP+Y+LDD+   +  P+ +T  W L + L++  G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+    GRSF+NCVSE  + + CE  +K+  GECRMDII+SE+ YLG+ DS+SYG+TWKAR        GFC D +NPEVFD TNVYG +  SDIHH+YY  YSYG+Q     +WT   +
Sbjct:    1 MTDLYNFRGTEKDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQ---GGVWTNNKM 222          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.450e-78
Identity = 119/196 (60.71%), Postives = 150/196 (76.53%), Query Frame = 0
Query:   95 ILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 286
            +LDD+   + SPTSVT KW L S L+V  G+IFYC G+  GGDCDELRIQST   ++ E+RGHGGS+YF  T+VTSW T NK PQ+    GRSF+NCVSE  + ETC+ ++K++ GECRMDII+SEMGY+G+ D++SYGLTWK RGFC D +NP+VF+TTNVYG I NS+IHHMYY MYSYG+Q     +WT   +
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQ---GGVWTNNEM 193          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 4.130e-78
Identity = 122/227 (53.74%), Postives = 160/227 (70.48%), Query Frame = 0
Query:   61 VVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE-TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWT 282
            ++D + + GGC T++D Y           KGP+++LD ND +  + T+ TGKW LT+ LFV  G+  YCRG  +GG+C ELRI+STS +++ E+RGHGG+LYFEDT+VTSW    + PQ    DGRSFI CVSE  + E TC   + +N GECRMDIIDSEMGYLG+  S++YG+TWK RGFC+D +NP+VFD  NVYG +  SDIHHMYY MYS+G+Q     +WT
Sbjct:    1 MIDAEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQ---GGVWT 221          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.670e-58
Identity = 113/240 (47.08%), Postives = 143/240 (59.58%), Query Frame = 0
Query:   41 YSESCGPFFYLSCHDFTTSFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 274
            Y+ES    +  S  + TT          GGC T+   ++S         KGP+Y +D + G +   TS TG W LT  L+V  G      G+  GGD DELR+ ST+ T  N LR HGGSL F  T V SW T   +P     DGRS+I+ +SE     DETCE  +K+  GE RMDI  SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD  NVYG + +SDIHHM + +Y+YG+Q
Sbjct:   48 YAESTARLYLESADNGTTR---------GGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 8.310e-57
Identity = 108/219 (49.32%), Postives = 135/219 (61.64%), Query Frame = 0
Query:   62 VDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 274
             D     GGC T+   ++S         KGP+Y +D + G +   TS TG W LT  L+V  G      G+  GGD DELR+ ST+ T  N LR HGGSL F  T V SW T   +P     DGRS+I+ +SE     DETCE  +K+  GE RMDI  SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD  NVYG + +SDIHHM + +Y+YG+Q
Sbjct:   60 ADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.650e-55
Identity = 107/212 (50.47%), Postives = 135/212 (63.68%), Query Frame = 0
Query:   69 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 274
            GGC T+   ++S         K P+Y +D + G + S T  TG W LT  L+V  G      GT  GGD DELR+ STS T Y  LR HGGSL F  T V SW T   +P     DGRS+I+ VSE  +DE  TCE  +K+  GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD  NVYG + +SDIHH+ + +Y+YG+Q
Sbjct:   71 GGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQ 273          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 6.490e-55
Identity = 104/210 (49.52%), Postives = 133/210 (63.33%), Query Frame = 0
Query:   69 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYG 272
            GGC T+   ++S         KGP+Y +D + G + S T  TG W LT  L+V  G      GT  GGD DELR+ STS T Y  LR +GGSL F  T V SW T   +P     DGRS+I+ VSE  +DE  +CE  +K+  GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD  NVYG + +SDIHH+ + +Y+ G
Sbjct:   71 GGCATLGQVWESRAG------KGPLYAVDPDSGDV-SETQ-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDT-YINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTDG 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI1.040e-8459.53Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE3.050e-8254.36MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI3.810e-7951.37Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE2.430e-7853.33MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI2.450e-7860.71Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI4.130e-7853.74Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.670e-5847.08Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI8.310e-5749.32Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI2.650e-5550.47Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LHA2_ECTSI6.490e-5549.52Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 99..289
e-value: 8.4E-33
score: 115.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73041contigH-elongata_contig73041:2227..3105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73041.14982.1mRNA_H-elongata_contig73041.14982.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73041 1738..3127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73041.14982.1 ID=prot_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MILIPKPSDQTRQRGVCMCMCVFVCVRPRIDWLPTCCLKSYSESCGPFFY
LSCHDFTTSFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDND
GIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTN
YNELRGHGGSLYFEDTLVTSWHTLNKTPQDGRSFINCVSEYKSDETCEDQ
SKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTT
NVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNVIIAITR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold