mRNA_H-elongata_contig73021.14981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73021.14981.1
Unique NamemRNA_H-elongata_contig73021.14981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73021.14981.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.790e-55
Identity = 128/206 (62.14%), Postives = 148/206 (71.84%), Query Frame = 1 
Query:  244 DQTLEEEDGDEDTPVAKSLQDLTASANRNREELDDERQLRQLQKDLHEDRKGAAAAARWS-------------ALEEPPPKKSRMEELTTKLGGRAELPTQAVRRITRTIGADGAETVRVSYSLRRQDLVRLDARGGKKQTTVSKVKALRGGTISASPLGFFLPRPQASAEVKAAALQDRAASGGQEE-VLKIRLKTK--TVMAPK 813
            ++TLE  DGD D PVAKSLQDL++S+ +N +ELDDERQ R LQ+DLH  R     AARW              +L     +K++ EEL  +LGGRA+LP QAVRRITRT+G DG ETVRVSYSLRRQDLVRLDARGGKKQT +SK  A  GG   ASPL FFLPRPQASAE KAAA ++R A+ GQEE VLKIRLKT   T +APK
Sbjct: 1294 EETLEGGDGDGDAPVAKSLQDLSSSSQKNTDELDDERQYRMLQQDLHGVR---GEAARWGTGEGSDAAPQGSMSLNVVEARKAQTEELLGQLGGRAQLPAQAVRRITRTVGPDGTETVRVSYSLRRQDLVRLDARGGKKQTALSKSAAASGGVGGASPLSFFLPRPQASAESKAAAYEERGAAAGQEETVLKIRLKTGGLTTVAPK 1496
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BLAST of mRNA_H-elongata_contig73021.14981.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.240e-54
Identity = 128/209 (61.24%), Postives = 148/209 (70.81%), Query Frame = 1 
Query:  244 DQTLEEEDGDEDTPVAKSLQDLTASANRNREELDDERQLRQLQKDLHEDRKGAAAAARWSALEEPPP-------------KKSRMEELTTKLGGRAELPTQAVRRITRTIGADGAETVRVSYSLRRQDLVRLDARGGKKQTTVSKVKALRGGTISASPLGFFLPRPQASAEVKAAALQDRAASGGQEE-VLKIRLKTKTV--MAPKDGK 822
            ++TLE  DGD D PVAKSLQDL++S+ +N +ELDDERQ R LQ+DLH  R     AARW   E P               +K++ EEL  +LGGRA+LP QAVRRITRT+G DG ETVRVSYSLRRQDLVRLDAR GKKQT +SK  A  GG   ASPL FFLPRPQASAE KAAA ++R A+ GQEE VLKIRLKT  +   APK+ K
Sbjct:  508 EETLEGGDGDGDAPVAKSLQDLSSSSQKNTDELDDERQYRMLQQDLHGVR---GEAARWGTGEGPDAAPQGSMSLNVVEARKAQTEELLGQLGGRAQLPAQAVRRITRTVGPDGTETVRVSYSLRRQDLVRLDARVGKKQTALSKSAAASGGVGGASPLSFFLPRPQASAESKAAAYEERGAAAGQEETVLKIRLKTGGLPTAAPKENK 713
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73021.14981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIW7_ECTSI2.790e-5562.14Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE1.240e-5461.24Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73021contigH-elongata_contig73021:247..3126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue1.6e-50
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size822
Cds size801
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.9776142-UTR-H-elongata_contig73021:246..2671622931131.9776142-UTR-H-elongata_contig73021:246..267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73021 247..267 +
1691679711.3302598-UTR-H-elongata_contig73021:246..2671691679711.3302598-UTR-H-elongata_contig73021:246..267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73021 247..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.99836-CDS-H-elongata_contig73021:267..4921622931131.99836-CDS-H-elongata_contig73021:267..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 268..492 +
1691679711.3453965-CDS-H-elongata_contig73021:267..4921691679711.3453965-CDS-H-elongata_contig73021:267..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 268..492 +
1622931132.0172222-CDS-H-elongata_contig73021:886..10721622931132.0172222-CDS-H-elongata_contig73021:886..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 887..1072 +
1691679711.3535054-CDS-H-elongata_contig73021:886..10721691679711.3535054-CDS-H-elongata_contig73021:886..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 887..1072 +
1622931132.034993-CDS-H-elongata_contig73021:1371..14751622931132.034993-CDS-H-elongata_contig73021:1371..1475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 1372..1475 +
1691679711.3613572-CDS-H-elongata_contig73021:1371..14751691679711.3613572-CDS-H-elongata_contig73021:1371..1475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 1372..1475 +
1622931132.0519648-CDS-H-elongata_contig73021:1869..19851622931132.0519648-CDS-H-elongata_contig73021:1869..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 1870..1985 +
1691679711.3709388-CDS-H-elongata_contig73021:1869..19851691679711.3709388-CDS-H-elongata_contig73021:1869..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 1870..1985 +
1622931132.065092-CDS-H-elongata_contig73021:2402..24911622931132.065092-CDS-H-elongata_contig73021:2402..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 2403..2491 +
1691679711.3790705-CDS-H-elongata_contig73021:2402..24911691679711.3790705-CDS-H-elongata_contig73021:2402..2491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 2403..2491 +
1622931132.0815964-CDS-H-elongata_contig73021:3045..31261622931132.0815964-CDS-H-elongata_contig73021:3045..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 3046..3126 +
1691679711.398897-CDS-H-elongata_contig73021:3045..31261691679711.398897-CDS-H-elongata_contig73021:3045..3126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73021 3046..3126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73021.14981.1prot_H-elongata_contig73021.14981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73021 268..3126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73021.14981.1

>prot_H-elongata_contig73021.14981.1 ID=prot_H-elongata_contig73021.14981.1|Name=mRNA_H-elongata_contig73021.14981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
MKSKARGVISSDGNSDGGGGGTGAASMEEEDDAHDLSDDEDDDDDLNEDD
LMSDIEEVRGAGRRRNDVNSMFIRDQTLEEEDGDEDTPVAKSLQDLTASA
NRNREELDDERQLRQLQKDLHEDRKGAAAAARWSALEEPPPKKSRMEELT
TKLGGRAELPTQAVRRITRTIGADGAETVRVSYSLRRQDLVRLDARGGKK
QTTVSKVKALRGGTISASPLGFFLPRPQASAEVKAAALQDRAASGGQEEV
LKIRLKTKTVMAPKDGK
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mRNA from alignment at H-elongata_contig73021:247..3126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73021.14981.1 ID=mRNA_H-elongata_contig73021.14981.1|Name=mRNA_H-elongata_contig73021.14981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2880bp|location=Sequence derived from alignment at H-elongata_contig73021:247..3126+ (Himanthalia elongata Himel1 dioecious)
GCTGGCAAGGGCAAGGGGAAAATGAAGTCAAAGGCTCGGGGTGTCATCTC
GAGCGACGGAAACAGCGACGGTGGCGGCGGTGGGACCGGGGCGGCATCGA
TGGAAGAGGAGGACGATGCCCACGACCTTAGTGACGACGAAGATGACGAC
GACGACCTTAACGAGGACGATCTCATGAGCGACATAGAGGAGGTACGGGG
GGCGGGGAGAAGACGTAATGACGTCAACTCGATGTTTATACGTGACGTGA
GCGCGATCTGTTTTTAATATGACGTCAGCATGGCGCGTCCAAGAGCGACG
TGACCAGCAACAAAGACGTGTGTCGATAAGGTTGTCACCTTCGTGAACGT
GAAGGTGTCGTGTGTATTTGCTCACACGTTTGGCCCACAAAGATGTACGA
CCTTTGGTTGTAGATGATTTATTCCTTAGGTTCGCAACATCACCGACTGC
TCGTCTACAGCGCCTTCTCTTTTTACGGCCACCCATCGTATATTGAAAAT
TTCCGTGGTAACTTTGAAATTTTTCGTGGTGGCGTTTTCCCTTTAACCGT
CTTTCCACCGAATGGAGACCGTATATATATATTTATTTTCTTCTTGAAAC
CAGCACCAGTTATCGTCTTCGTCTGTGCCTCTCCCGCAAGCAGACACTAG
AGGAGGAGGACGGAGACGAAGATACTCCGGTAGCAAAAAGCCTCCAGGAC
CTCACAGCATCTGCGAACCGGAACCGGGAGGAGCTGGACGACGAGCGTCA
GCTGCGCCAGCTCCAGAAGGACCTTCACGAGGATAGGAAGGGGGCTGCTG
CTGCTGCCCGCTGGAGTGCGTTGGAGGTAGCGCGATGATACGATATGCGG
TGGACGTGACTTTGCGTTGACGAAGCAATGTAGGGAGAGTAACGCCTCCT
TCTCCCCGCCCTCCCATGGCGAAGGGATGGATGTTGCCGATATTGTGTTG
CGCGGTGTAGATACCCGAATAACGAGAGCAGTCAAACGAGGCACGGCTTG
TCCCCCCCTCCCTGTCCTCAAATCAGTTTATTATTGTTATTGTGCATAGT
ATGTTAACTAGTGCGGAGTACCGAGATTCAATATCGTCTTAAGAATTATC
GCGACCCCGCGGCACGGCTTCATAGGAGCCTCCGCCGAAAAAGTCGCGTA
TGGAGGAACTGACGACGAAGCTCGGTGGCAGGGCGGAGCTACCCACCCAG
GCTGTTCGGCGCATCACGAGGACGATCGGGTGCGCATTTTTGTGTTTTTT
ATTTTTGTGTTTGTGTGTGTGTGTTTTTTTTTGAGTCGGCCCGGTCCCTT
TTTGCCGCGATAACACAAACTGATTTGATCCGATTCGATCCGATCTAATC
TGACGTGGGCCGTGTGGTCCACATGAATTACGCGGCGTGATTTTGTGTGT
GTGTGTGTGTGTGTGTGTGAGTGTGTGTCTGTGGTGTGCTTTCTATCTTT
TAAGAAGGAAAACTGCATACCGCAAAAAGGCATGAAAGTGCGCACTGTTC
CGGTACTGCTATATCGTTTGATGTAGCGCGTCGTATCGGGGACCGTGGTG
AGGGGCGCAAGCTTAGCTCTCAGCTGAATATTTGTTTTTGTCTTACGAGT
TGAGTGGCGGTGCTTCGTCGCAGGGCGGATGGTGCAGAGACGGTACGGGT
TTCGTACTCCTTGCGAAGGCAAGATCTGGTGCGTCTGGATGCACGCGGCG
GAAAGAAGCAGACGACCGTATCGAAGGTTAAAGCCTTGCGTTCTGTTGTT
TTATCTTGTGCTTTGCGGTTCAAGTTGGCACACGGCAGCAAGCAGGGTAC
GCTGTCCGCGAGAAACTATATGAGAACGCCTTTGTCCGGAGTTCCACCAT
TTCCGCTTTTGTGCAAGCCGCCTTGTTGCTGGCCGCGTCGATTTTCCAGG
TGGCCGCCATCATGCTCGCGCTGTTTAGCTCTGCTCTGCGATACTATACC
ATCCTATGTTATGCCTTGCATCGTACTCCTCTAATCTCAACCGGGAGACC
CGCACTCGCGTCCGCGAATTGTGCTCAACCCGCCGGCCGCGTGATCACAC
ACTCTGGACTCACTCTGCTGACTTCATCGACGATTTTTTGTATTGGTGTT
TTATTGTGCTGCTCGATCTCCTGCGAAGTCTGGCGGCGGAACGGGGTCAT
CGGCAGGAGGGGGTACCATCAGCGCCAGTCCCCTGGGGTTCTTCTTGCCG
AGACCGCAGGCGTCCGCCGAGGTGAAGGCGGCCGCCCTCCAAGACGTGAG
TTGTGCTGAGTTGTGCTCAGTCTACAGGACCCGGCGAGCTCGAGGTTTGA
CTCTCCATATTTTGATTTTATGTCAAGATTTCGTTTTCGAATTCTTTTTT
TTTCTTTTCGATTTTAAAATTTCGATTTCGAGATTTCGATTTTGATTTTG
ATCTTCATTTGAAGATTTCATGCCTTGACCTTCTAAAATCTCTATGGGTG
TACTGTTTTTTTCTGTACTGTACTGTACTTCACTCAACCATACTATCGAT
AATTTTTGTTAAAAATACTAAAATTAGTTTAAACTCTCCGAACATCCATG
CGAGCTGAAATCGAGCTGACCAACCATTGTGTACATTGCTAGCTATACGC
TCAAAAATCGTCACATGATATTTGTCGAAAGAGAGGGGCGGAGGATCGAG
GGGGGCTGATTTATCGACTGTTGCGGTTTCTCTCTATGCGCACCGTTCGT
TTTGTTTCAAGGACGAAAGAGAATTTCTTCGTCAAGCATCCTCTTTATGT
CTTGTATGTTTGTCCCTCCGACGTATTGTCGCTGTTTTGGGTTTTGTAGA
GAGCTGCGAGCGGGGGACAGGAGGAAGTTCTCAAGATCCGCCTCAAAACC
AAGACAGTTATGGCACCCAAGGATGGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig73021:247..3126+

>mRNA_H-elongata_contig73021.14981.1 ID=mRNA_H-elongata_contig73021.14981.1|Name=mRNA_H-elongata_contig73021.14981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig73021:247..3126+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTCAAAGGCTCGGGGTGTCATCTCGAGCGACGGAAACAGCGACGG
TGGCGGCGGTGGGACCGGGGCGGCATCGATGGAAGAGGAGGACGATGCCC
ACGACCTTAGTGACGACGAAGATGACGACGACGACCTTAACGAGGACGAT
CTCATGAGCGACATAGAGGAGGTACGGGGGGCGGGGAGAAGACGTAATGA
CGTCAACTCGATGTTTATACGTGACATGAAGTCAAAGGCTCGGGGTGTCA
TCTCGAGCGACGGAAACAGCGACGGTGGCGGCGGTGGGACCGGGGCGGCA
TCGATGGAAGAGGAGGACGATGCCCACGACCTTAGTGACGACGAAGATGA
CGACGACGACCTTAACGAGGACGATCTCATGAGCGACATAGAGGAGGTAC
GGGGGGCGGGGAGAAGACGTAATGACGTCAACTCGATGTTTATACGTGAC
CAGACACTAGAGGAGGAGGACGGAGACGAAGATACTCCGGTAGCAAAAAG
CCTCCAGGACCTCACAGCATCTGCGAACCGGAACCGGGAGGAGCTGGACG
ACGAGCGTCAGCTGCGCCAGCTCCAGAAGGACCTTCACGAGGATAGGAAG
GGGGCTGCTGCTGCTGCCCGCTGGAGTGCGTTGGAGCAGACACTAGAGGA
GGAGGACGGAGACGAAGATACTCCGGTAGCAAAAAGCCTCCAGGACCTCA
CAGCATCTGCGAACCGGAACCGGGAGGAGCTGGACGACGAGCGTCAGCTG
CGCCAGCTCCAGAAGGACCTTCACGAGGATAGGAAGGGGGCTGCTGCTGC
TGCCCGCTGGAGTGCGTTGGAGGAGCCTCCGCCGAAAAAGTCGCGTATGG
AGGAACTGACGACGAAGCTCGGTGGCAGGGCGGAGCTACCCACCCAGGCT
GTTCGGCGCATCACGAGGACGATCGGGAGCCTCCGCCGAAAAAGTCGCGT
ATGGAGGAACTGACGACGAAGCTCGGTGGCAGGGCGGAGCTACCCACCCA
GGCTGTTCGGCGCATCACGAGGACGATCGGGGCGGATGGTGCAGAGACGG
TACGGGTTTCGTACTCCTTGCGAAGGCAAGATCTGGTGCGTCTGGATGCA
CGCGGCGGAAAGAAGCAGACGACCGTATCGAAGGTTAAAGCCTTGCGGCG
GATGGTGCAGAGACGGTACGGGTTTCGTACTCCTTGCGAAGGCAAGATCT
GGTGCGTCTGGATGCACGCGGCGGAAAGAAGCAGACGACCGTATCGAAGG
TTAAAGCCTTGCGAGGGGGTACCATCAGCGCCAGTCCCCTGGGGTTCTTC
TTGCCGAGACCGCAGGCGTCCGCCGAGGTGAAGGCGGCCGCCCTCCAAGA
CGAGGGGGTACCATCAGCGCCAGTCCCCTGGGGTTCTTCTTGCCGAGACC
GCAGGCGTCCGCCGAGGTGAAGGCGGCCGCCCTCCAAGACAGAGCTGCGA
GCGGGGGACAGGAGGAAGTTCTCAAGATCCGCCTCAAAACCAAGACAGTT
ATGGCACCCAAGGATGGCAAGAGAGCTGCGAGCGGGGGACAGGAGGAAGT
TCTCAAGATCCGCCTCAAAACCAAGACAGTTATGGCACCCAAGGATGGCA
AG
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