mRNA_H-elongata_contig7282.14961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7282.14961.1
Unique NamemRNA_H-elongata_contig7282.14961.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: D7FII3_ECTSI (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII3_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 8.390e-85
Identity = 140/214 (65.42%), Postives = 166/214 (77.57%), Query Frame = 1
Query:    1 AEVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTT--AGNGCNIPSRGHSLSVISV--SVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKRE 630
            AEV +SDCMRLP+RSGVFDAAISIAVLHHFSSE RRLRAL+ELCR++RPGG  LVYAWAIEQ+QDSRRSFAAQDVLVPW L DHH +     TG +G  SG+T    +    P T     +G + P++G    V++   S S +G VVAPTP  PRHGVR++ + G+ GSVVYQRYCHVY  GELEGLV++VDGLRLVESYYDRSNWC+VA+R+
Sbjct:  379 AEVLASDCMRLPYRSGVFDAAISIAVLHHFSSEVRRLRALTELCRLVRPGGRLLVYAWAIEQEQDSRRSFAAQDVLVPWQLADHHNRSQGRDTGDDGN-SGNTMDGGQESEEPATANVERSGASAPAKGAEDGVVAAGDSKSHAGGVVAPTPTAPRHGVRVDGVAGTAGSVVYQRYCHVYARGELEGLVERVDGLRLVESYYDRSNWCVVAERD 591          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A835YPN8_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.620e-41
Identity = 84/210 (40.00%), Postives = 112/210 (53.33%), Query Frame = 1
Query:    1 AEVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKRE 630
            AE+ ++D + LP+R G FDAAISIAVLHH S+  RRL A +E+ R+LRPGG  LVYAWA EQ ++S RSF+ QD+LVPWH  D                                             S+   S   S      A T + P+HG R E     + S V+QRYCH++ +GE+E L  +V G  +V+SYYD SNWC V +++
Sbjct:   95 AELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFAD---------------------------------------------SMRRKSADASTERHGGAKTSQQPQHGYRAEG----KHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQKD 255          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A813ABV7_9DINO (Alkbh8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ABV7_9DINO)

HSP 1 Score: 126 bits (316), Expect = 1.030e-32
Identity = 73/207 (35.27%), Postives = 103/207 (49.76%), Query Frame = 1
Query:   13 SSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKRET 633
            ++D + +P RSG  DAA+SIAVLHH S+  RR  A+ E+ R+LRPGG  ++ AWA EQ  DS+R+F AQDV+VPW     +                  T    +P  P          P  G    V  ++ +  G V A   RV                 V+QRYCHVYV+GEL  LV    G  + +++++R NWC+   R++
Sbjct:   36 TADGLAVPLRSGAADAAVSIAVLHHLSTAERRAAAVGEVLRVLRPGGTFMIQAWAKEQGADSKRTFEAQDVMVPWKFRTAYL-----------------TQAPAFPGGPR---------PEPGQEAPVAGMAEAWGGSVDAEADRV-----------------VFQRYCHVYVEGELAELVAATPGATVTKAWWERGNWCVTGVRDS 199          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A507DN10_9FUNG (Methyltransf_11 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DN10_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 1.390e-32
Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 1
Query:    4 EVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALP-----------GSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKRE 630
            E    D + LP+R+  FD  ISIAV+HHFSS  RR+ A+ EL R +RPGG  L++ WA+EQ+  S+R F  QDV VPW+L      G +     NG   G   G K   N+      +   +  +G +  V   + S S +V  P        + LE+ P           G+E ++VYQRY HV+V GEL+ +V+   GL + +S YDR NW I+A ++
Sbjct:   90 EAMVCDNLHLPYRTNCFDFVISIAVIHHFSSFERRVAAVKELVRTIRPGGKILIFVWALEQEDGSKRKFEKQDVFVPWNLDAKTFAGKSKSVAANG---GRRKGKK---NQGQDGQDSAAVVEDKGDTKEVDRTTPS-SPEVANPNVAKTIEALSLESNPEDAAPKVVVKSGNE-NIVYQRYYHVFVKGELDQVVEAAGGLDVNKSGYDRDNWYIIATKK 301          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A7S3GL16_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GL16_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 2.620e-32
Identity = 77/211 (36.49%), Postives = 106/211 (50.24%), Query Frame = 1
Query:    4 EVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSL--SVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKRE 630
            EV   D + LP+RS   D AISIAV+HHF++  RR RA+ E+ R++RPGG AL Y WA+EQ+   +R +  QDV VPWHL  H+ +      G  G                                   S +   V V GK  +      +     E     EG VV +RY H++V GELE LV +VDG  ++ESY+D +NWC V +++
Sbjct:   94 EVLVCDNLSLPYRSASADYAISIAVIHHFATPDRRKRAIEEIMRVVRPGGSALFYVWALEQE---KRRYEQQDVFVPWHLQAHYRKSGKGEAGEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDVGEGVEVDGKSESKGAEQAKSSG--EGDEEEEGEVVLKRYYHMFVQGELEELVAEVDGCNVMESYFDHANWCCVVRKQ 299          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: K3W7F8_GLOUD (Methyltransf_11 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7F8_GLOUD)

HSP 1 Score: 125 bits (313), Expect = 7.930e-32
Identity = 73/207 (35.27%), Postives = 100/207 (48.31%), Query Frame = 1
Query:    7 VFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKR 627
            +F  D +++P R+G FDAAISIAVLHH S+ ARR+  +SEL RI++ GG   + AWA EQD+ S+R F  QDV+V W L + +                                               ++  ++   K  A                  +  VVYQRYCHVY +GELE LV  V GL++VE+ Y RSNWC+  +R
Sbjct:   99 LFGCDALKVPLRTGAFDAAISIAVLHHISTRARRIALISELARIVKVGGRVFIVAWAFEQDERSKRQFDEQDVMVEWKLQNKY-----------------------------------------------VAEPLAAHAKQDA-----------------DKKWVVYQRYCHVYTEGELEELVACVPGLKVVETQYSRSNWCVTVER 241          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A7S2R7G3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R7G3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.310e-31
Identity = 79/209 (37.80%), Postives = 97/209 (46.41%), Query Frame = 1
Query:    4 EVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQD-SRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKR 627
            E F +D + LPFR G+FDA +SIAVLHH SSEARR+R +SE  RI++PGG  L YAWA EQD   SR  F  QDVLVP+H                                                                  T R     V       S+ + V+QRYCHVYV GELEGL   +D   +V+SYYD  NWC+V ++
Sbjct:  270 EAFVADNLHLPFRDGIFDAVLSIAVLHHISSEARRVRLVSETMRIVKPGGRGLFYAWAQEQDDGVSRHVFGEQDVLVPFHARKDK-------------------------------------------------------------TKREQAEQVSHAREDSSKNAFVFQRYCHVYVKGELEGLFACLDDCVVVDSYYDCGNWCVVVEK 417          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: S4RIP0_PETMA (Alkylated DNA repair protein alkB homolog 8 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=S4RIP0_PETMA)

HSP 1 Score: 129 bits (324), Expect = 5.010e-31
Identity = 90/219 (41.10%), Postives = 117/219 (53.42%), Query Frame = 1
Query:   19 DCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLG-----DHHAQGSTSITGMNGMASG------STTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGS-----EGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKR 627
            D + LP R+G  DA +SIA++HH S+E RRL+AL EL RILRPGG ALVY WA+EQ     RS      L P H+G     DH     TS T  NG+ S       S+   +  P  P      G  +P+RGH L V +       + V     VP H  R    PG      E + VY RY HV+ +GELE L  ++DG R++ SYYD+ NWC+V ++
Sbjct:  458 DALALPVRTGACDACLSIAIIHHLSTEERRLKALRELLRILRPGGRALVYVWALEQKYRQARS----KYLKPKHVGVGETADHEK--GTSSTPTNGVKSPCDDVAESSRPAEPAPAPPXXRRAPG--MPTRGH-LPVHTNRTPFRAQDVL----VPWHHRRQGETPGQPERACEEAPVYHRYYHVFREGELEALCARLDGARVLLSYYDQGNWCVVVEK 663          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A7S4ESV5_CHRCT (Hypothetical protein n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ESV5_CHRCT)

HSP 1 Score: 123 bits (309), Expect = 6.790e-31
Identity = 78/218 (35.78%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   16 SDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRS--FAAQDVLVPWHL-------GDHHAQG-----STSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKR 627
            +D + LP+RS  FDA   IAVLHH +++ RR R ++E  R+LRPGG AL YAWA++Q Q  R    F +QDV VP+H        G H AQ      +T+ T  N +AS                A +GC  P++                                       + V+QRYCHVY  GEL  L   VDG R++E YYD  NWCI+A++
Sbjct:  112 ADALMLPYRSDAFDAVTCIAVLHHITTQVRRQRLIAEALRVLRPGGQALFYAWAMDQTQGGRSGHLFESQDVFVPFHKRQTHAGDGPHSAQNHGDAAATAATSTNSIAS----------------AEHGCYDPAKK--------------------------------------AHVFQRYCHVYRQGELTDLAASVDGTRILEEYYDAGNWCILAQK 275          
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Match: A0A1Y1ZZL5_9FUNG (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y1ZZL5_9FUNG)

HSP 1 Score: 119 bits (299), Expect = 2.330e-30
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 1
Query:    4 EVFSSDCMRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAWAIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKRYPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLEALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAKR 627
            E   +D + LP+R+  FD  +SIAV+HHF+S  RR+ A+ EL R L+PGG  L++ WA+EQ+  S+R F  QDV VPW+L         +     G+A G     +                    H L+ +S+                  G   E +     ++VYQRY HV+V GEL+ +V    G+ +  S YDR NW ++AK+
Sbjct:   15 ETMVADNLSLPYRTSSFDFVVSIAVIHHFTSFDRRVAAVKELIRTLKPGGRVLIFVWALEQEDGSKRRFDKQDVFVPWNLDKKSFGSKAAGKEKAGVAKGKEEVLE--------------------HGLNALSLKKE--------------EGEVKEVVKSGNENIVYQRYYHVFVKGELDEVVAGAGGVEIETSGYDRDNWYVIAKK 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7282.14961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FII3_ECTSI8.390e-8565.42Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835YPN8_9STRA2.620e-4140.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A813ABV7_9DINO1.030e-3235.27Alkbh8 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A507DN10_9FUNG1.390e-3237.27Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S3GL16_9EUKA2.620e-3236.49Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
K3W7F8_GLOUD7.930e-3235.27Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S2R7G3_9STRA2.310e-3137.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
S4RIP0_PETMA5.010e-3141.10Alkylated DNA repair protein alkB homolog 8 n=4 Ta... [more]
A0A7S4ESV5_CHRCT6.790e-3135.78Hypothetical protein n=3 Tax=Chrysotila carterae T... [more]
A0A1Y1ZZL5_9FUNG2.330e-3033.17S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7282contigH-elongata_contig7282:6562..10281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.2
Seed ortholog evalue5e-68
Seed eggNOG ortholog2880.D7FII3
KEGG koko:K10395,ko:K10770
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.tRNA (uracil) methyltransferase activity
EggNOG OGsCOG0500@1,KOG1331@2759
EC2.1.1.229
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size639
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7282.14961.1prot_H-elongata_contig7282.14961.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7282 6562..10257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.4131405-CDS-H-elongata_contig7282:6561..67761622931130.4131405-CDS-H-elongata_contig7282:6561..6776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 6562..6776 -
1691679710.5573118-CDS-H-elongata_contig7282:6561..67761691679710.5573118-CDS-H-elongata_contig7282:6561..6776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 6562..6776 -
1622931130.427148-CDS-H-elongata_contig7282:6908..70371622931130.427148-CDS-H-elongata_contig7282:6908..7037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 6909..7037 -
1691679710.5701964-CDS-H-elongata_contig7282:6908..70371691679710.5701964-CDS-H-elongata_contig7282:6908..7037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 6909..7037 -
1622931130.4392555-CDS-H-elongata_contig7282:7133..72251622931130.4392555-CDS-H-elongata_contig7282:7133..7225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 7134..7225 -
1691679710.5803564-CDS-H-elongata_contig7282:7133..72251691679710.5803564-CDS-H-elongata_contig7282:7133..7225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 7134..7225 -
1622931130.45862-CDS-H-elongata_contig7282:8970..90741622931130.45862-CDS-H-elongata_contig7282:8970..9074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 8971..9074 -
1691679710.59948-CDS-H-elongata_contig7282:8970..90741691679710.59948-CDS-H-elongata_contig7282:8970..9074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 8971..9074 -
1622931130.4767933-CDS-H-elongata_contig7282:10182..102571622931130.4767933-CDS-H-elongata_contig7282:10182..10257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 10183..10257 -
1691679710.6137133-CDS-H-elongata_contig7282:10182..102571691679710.6137133-CDS-H-elongata_contig7282:10182..10257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 10183..10257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.489314-UTR-H-elongata_contig7282:10257..102811622931130.489314-UTR-H-elongata_contig7282:10257..10281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7282 10258..10281 -
1691679710.6242952-UTR-H-elongata_contig7282:10257..102811691679710.6242952-UTR-H-elongata_contig7282:10257..10281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7282 10258..10281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7282.14961.1

>prot_H-elongata_contig7282.14961.1 ID=prot_H-elongata_contig7282.14961.1|Name=mRNA_H-elongata_contig7282.14961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MRLPFRSGVFDAAISIAVLHHFSSEARRLRALSELCRILRPGGVALVYAW
AIEQDQDSRRSFAAQDVLVPWHLGDHHAQGSTSITGMNGMASGSTTGFKR
YPNRPTTTAGNGCNIPSRGHSLSVISVSVSVSGKVVAPTPRVPRHGVRLE
ALPGSEGSVVYQRYCHVYVDGELEGLVDKVDGLRLVESYYDRSNWCIVAK
RETQ*
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mRNA from alignment at H-elongata_contig7282:6562..10281-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7282.14961.1 ID=mRNA_H-elongata_contig7282.14961.1|Name=mRNA_H-elongata_contig7282.14961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3720bp|location=Sequence derived from alignment at H-elongata_contig7282:6562..10281- (Himanthalia elongata Himel1 dioecious)
GCGGAAGTGTTTTCGAGCGACTGCATGCGGCTTCCATTTCGGTCTGGAGT TTTTGACGCCGCCATCAGCATCGCGGTGCTGCATCACTTCTCCTCTGAGG TAGGTATAATAGTAGGTTTAATAGGAATAGTAGGTTTAATAGACATAATA TGTATGATAGGCATAATAGCTTTAGTAGGTTTAATATGTATAATAGGTTT AATAGGCATAATAGGTATAATATGTATAATAGGTTTAGTAGGCATAATAG CTTTAGTAGGTTTAATAGGTATAATAGGTTTAATAGGCAACTATACCCTC TAAAAACGAGACCAACTACACCCTCTAAAAACGAGACCAACTACACCCTC TAAAAACGAGACCAACTATACCCTCTAAAAACGAGACCAACTATACCCTC TAAAAACGAGACCAACTATACTTATCTTCCTAGTTTTTATTTTTTCGCTG TACTATTAGTAATATACTACTATCAACCCCTCTCTAGTTTACGACTATAA TAATCAACCTAGATCAACTCACCAATACTCTCTATACTATGGTTTGTTTG GTGTCCCCACATGACGTCATGACGGATTATATACTACTAAGTGTACGGAA TAATGATGGGAACCTCGACATTAAACCGTTGACCCGATGGATTTATTTTT GGGGGAACACGAACTATCACGTGTGACGATTTTGTGCTCAAAGGTAGTAT TGTACACATTCAAACCTGACGATAGTTGGTCCCCTGGACCACACCTTTCA TGGTGCTAAGAAGGTGTGGATGTTCGGAGAGTTGGAATGAGTTCATTTTT TTTTTGTAAATAATAATAGGTTTATTAGACATAATATGTTTATTAGGTAT AATAGGTGTAATGGGCATAATAGGTTTAATAGGCATCTCCAAACTCAACA TTTTTAGTTTTACTGTGTGTCGGCTCTGCAATCAAATGTTGGAATGTGTT AACCCCAGTCGCACACACCTCCCAATCTGCTCCGCATGACGTCATGACTA TGACCACAGCAGTACTAGCATTCTACATTGTACATTGTACTATTAACAGT ACTGTACTGTACTGTACTATGACACTCATATATGTATATTAGTTTATATA ACCAGCTAACCAGCTCTATCTACCCGCCCGGCGTGATCGCGTCGACAGAA GGTTTTTATGACCAATCCGTCCATCCATCCACAACTAATACTCCCCACGT GCGGCAGGCTCGTCGCTTGAGGGCTCTCTCGGAGCTGTGTCGGATACTTC GACCAGGGGGCGTGGCTTTGGTGTACGCGTGGGCTATCGAGCAGGACCAG GACTCGAGGAGGTGCGTGCGCCTGCCTGTTGACGCAGGGCTTTCGTTTTC AGGTGGTTTCGTTAGTGTAGTATCATTCATTATACAGTACATTATAACCG ACGTCTAGTGATAGCAATAGTAATATAATAGTAAAATACTCACATCGTCG CTCGAGAAGTCTACAGCCGGTATTCTAGTGCAGTAGATGGATCAGTCGAT GGGTCAGTCAGTTCGGCGGAGGTGTGGGTCAGCGGTGGCTGTGACGGTGA CGGGTCTGTTGTCCTACAATCGCAGTGTATGATATAAACAATACTATCGC AGTGTATGATATTTTGGTAAGACAAAGTCTATTTGTGGGTAACATGGGTA AGACAAAGTCAATATGTTAGGAATGGCCTCACAACTCCATGAAAATTGAA GGCGTGTACCAGGTAGTTTATAAATATACATCGTACATAATATATTATGC ACCGTCGATAATACATGTCTATACATAATATAGTCGATAATACAGTAATG GAAAAACTATTATGCAGTATAGTATAGTATAGTATAATACAGTATAATCG ACTCTTCGATGACCTCAGGCGGAAGTGGCAGCGTTGAAGTTCTTGTACTT GGTAATACGAGGTATCTATATCTCTATCTATATACTGTACTTATATGTAT TATATGAAATAGTATTATGTACCATATTATGTATTGAACAACTCCCTCCG TGACCGAAAATATAGGAAACCCAATAGACGAAAGGTCTCCACAACGGCCC CAACGGTCATATCTTTCCACCGCACAGTCGACACCAATGGTATATGTCAC GTATCTCATCACTCATAACTCATCTTCAACATACTGTACCAGTAATATTA ATAATTCCCCTCATGCTCCTCATATCTCATATCACCTATCACCCATCACC TACTCCTTTTTGTCTAAATAGTTTATTATTATAGTTACTGTATACTGTGT ATACTGTATATACTATATACAGTATACTAAATACTATATGCTATATACTA TATATTATATACTACACACTATATACTATATACTGTATACTATATGCTAT ATACTATATACTATGTACTATATACTCTATACTGTCTACTATATACTGCA TATACTGTATACTGTATTTCGGAGTCGTTACATCGTTGTTGGTCGAGAGT AGATTCATATCCTACTATACTGTATTGTACACCACACTACTGTACTACAT TTATTAATAGCTTTGGACTCGTCGTTACATGGTCAATCGTCAATTTTCTT CCTAAAACTTAAAATCCCTCTCTTCCTTCCTCCTTCCTTCCTCCCTCTCT TCCTCCTTCCTTCCCTCCTCCCCCTCTGCCTTCCCCTCTCCCGCACGGCG TGACTGTCGTCCTTTTTCGTTCTCTTCTCCGCCTCTCTGCCATCGACACC TAAACATAACGCTTCTCTTCATTTCAACCATCGACATCCACATCCACATC GACCGGAACGAAAATCCCGTTGAGCCGCCTCGACGTTATTTGCCCACCAT CGCCTCATCGCTGATTGGTTGATTGGTACTGGACAACGTATCCTGTATGG ACCTGGTATTATGTTATACGGCACTTTACCTCGGATATGACGTCATTGCG GATGTGGCATCGCACATGCATGGCATCGCGTATTCGGGGCATCACGTATA CATGGTGGTATTGTACTACGAATATTTGGCACTTCGGCGACCACTATTAC CACTCTTTAAACTCTTAATATATTCTTATATTAATAATCCTTACGATCGA GCCAAGGAGTTTTGCAGCGCAAGATGTGCTGGTGCCATGGCACCTGGGTG ACCATCATGCTCAGGGAAGCACTAGCATTACTGGCATGAACGGCATGGGT GATTTCTGCCCTAAGTCTAGGCGTATGATTTGTCATAGTCGTAGTACCGA CGGCAATAGGGACCAAGATTACGTAACCGATGATCAAGGGACAGCATCGG GCAGCACCACGGGGTTCAAACGATATCCAAATCGCCCAACGACCACCGCA GGCAATGGTTGTAATATTCCTAGCCGTGGTCATAGTCTTAGCGTGATATC GGTATCGGTATCGGTATCTGGTAGTCAACCGGCCAACGACATCAAGACGG CCGGGAATAGTTGTGGAGATAACCACCGTATGGGGCCATCGTCAAGGCAA CCATCGACAACGCTAATGACGAGACTAGTTGGACAGCGCGGAGTACAGAC CAAAGAGGTTGTTGCGCCCACTCCGAGGGTGCCGAGGCATGGTGTCCGAC TGGAGGCCCTACCAGGGTCGGAGGGTAGCGTAGTTTACCAGCGGTATTGC CACGTGTACGTTGATGGTGAGCTAGAAGGGCTGGTGGACAAAGTAGATGG ACTGAGGCTGGTGGAGAGCTACTACGACCGATCGAACTGGTGTATCGTAG CTAAGAGAGAGACGCAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7282:6562..10281-

>mRNA_H-elongata_contig7282.14961.1 ID=mRNA_H-elongata_contig7282.14961.1|Name=mRNA_H-elongata_contig7282.14961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig7282:6562..10281- (Himanthalia elongata Himel1 dioecious)
ATGCGGCTTCCATTTCGGTCTGGAGTTTTTGACGCCGCCATCAGCATCGC
GGTGCTGCATCACTTCTCCTCTGAGATGCGGCTTCCATTTCGGTCTGGAG
TTTTTGACGCCGCCATCAGCATCGCGGTGCTGCATCACTTCTCCTCTGAG
GCTCGTCGCTTGAGGGCTCTCTCGGAGCTGTGTCGGATACTTCGACCAGG
GGGCGTGGCTTTGGTGTACGCGTGGGCTATCGAGCAGGACCAGGACTCGA
GGAGGCTCGTCGCTTGAGGGCTCTCTCGGAGCTGTGTCGGATACTTCGAC
CAGGGGGCGTGGCTTTGGTGTACGCGTGGGCTATCGAGCAGGACCAGGAC
TCGAGGAGGAGTTTTGCAGCGCAAGATGTGCTGGTGCCATGGCACCTGGG
TGACCATCATGCTCAGGGAAGCACTAGCATTACTGGCATGAACGGCATGG
GAGTTTTGCAGCGCAAGATGTGCTGGTGCCATGGCACCTGGGTGACCATC
ATGCTCAGGGAAGCACTAGCATTACTGGCATGAACGGCATGGCATCGGGC
AGCACCACGGGGTTCAAACGATATCCAAATCGCCCAACGACCACCGCAGG
CAATGGTTGTAATATTCCTAGCCGTGGTCATAGTCTTAGCGTGATATCGG
TATCGGTATCGGTATCTGGTACATCGGGCAGCACCACGGGGTTCAAACGA
TATCCAAATCGCCCAACGACCACCGCAGGCAATGGTTGTAATATTCCTAG
CCGTGGTCATAGTCTTAGCGTGATATCGGTATCGGTATCGGTATCTGGTA
AGGTTGTTGCGCCCACTCCGAGGGTGCCGAGGCATGGTGTCCGACTGGAG
GCCCTACCAGGGTCGGAGGGTAGCGTAGTTTACCAGCGGTATTGCCACGT
GTACGTTGATGGTGAGCTAGAAGGGCTGGTGGACAAAGTAGATGGACTGA
GGCTGGTGGAGAGCTACTACGACCGATCGAACTGGTGTATCGTAGCTAAG
AGAGAGACGCAGTAGAGGTTGTTGCGCCCACTCCGAGGGTGCCGAGGCAT
GGTGTCCGACTGGAGGCCCTACCAGGGTCGGAGGGTAGCGTAGTTTACCA
GCGGTATTGCCACGTGTACGTTGATGGTGAGCTAGAAGGGCTGGTGGACA
AAGTAGATGGACTGAGGCTGGTGGAGAGCTACTACGACCGATCGAACTGG
TGTATCGTAGCTAAGAGAGAGACGCAGTAG
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