mRNA_H-elongata_contig119405.1495.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119405.1495.1
Unique NamemRNA_H-elongata_contig119405.1495.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119405.1495.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-23
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  133 MGYQLDLDRLCMITSSEIDVPIDPVTAIPLVCQWFCDSCASTKTGVVASTAKRSRASDLQVKNG 324
            MGYQLDLDR C+IT+S++D+PID VT +P+VCQWFCDSC+ST TGVVA+TA R +   L V  G
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAG 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119405.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI2.460e-2365.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119405contigH-elongata_contig119405:1552..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPHD-type zinc finger protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_009900.1
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.8019438-CDS-H-elongata_contig119405:1551..18751622929698.8019438-CDS-H-elongata_contig119405:1551..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119405 1552..1875 -
1691679123.419554-CDS-H-elongata_contig119405:1551..18751691679123.419554-CDS-H-elongata_contig119405:1551..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119405 1552..1875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119405.1495.1prot_H-elongata_contig119405.1495.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119405 1552..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119405.1495.1

>prot_H-elongata_contig119405.1495.1 ID=prot_H-elongata_contig119405.1495.1|Name=mRNA_H-elongata_contig119405.1495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
DDSSACVVCGESETVNDSEEQSSSSVESFALRCNSCRLWYHPWCMGYQLD
LDRLCMITSSEIDVPIDPVTAIPLVCQWFCDSCASTKTGVVASTAKRSRA
SDLQVKNG
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mRNA from alignment at H-elongata_contig119405:1552..1875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119405.1495.1 ID=mRNA_H-elongata_contig119405.1495.1|Name=mRNA_H-elongata_contig119405.1495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig119405:1552..1875- (Himanthalia elongata Himel1 dioecious)
GATGATTCCTCAGCGTGTGTTGTATGTGGTGAGAGCGAAACAGTGAACGA
TAGTGAAGAACAATCGTCATCGTCAGTTGAGTCCTTCGCACTGAGATGCA
ACAGCTGCCGACTCTGGTACCACCCCTGGTGCATGGGATACCAACTTGAC
CTCGACCGATTGTGTATGATCACTTCGTCAGAGATCGACGTTCCCATCGA
TCCCGTTACGGCTATACCTTTAGTCTGCCAGTGGTTCTGCGATTCATGTG
CTTCTACGAAAACCGGTGTCGTGGCGTCGACTGCGAAACGCTCTAGAGCC
TCGGATTTGCAGGTCAAAAACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig119405:1552..1875-

>mRNA_H-elongata_contig119405.1495.1 ID=mRNA_H-elongata_contig119405.1495.1|Name=mRNA_H-elongata_contig119405.1495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig119405:1552..1875- (Himanthalia elongata Himel1 dioecious)
GATGATTCCTCAGCGTGTGTTGTATGTGGTGAGAGCGAAACAGTGAACGA
TAGTGAAGAACAATCGTCATCGTCAGTTGAGTCCTTCGCACTGAGATGCA
ACAGCTGCCGACTCTGGTACCACCCCTGGTGCATGGGATACCAACTTGAC
CTCGACCGATTGTGTATGATCACTTCGTCAGAGATCGACGTTCCCATCGA
TCCCGTTACGGCTATACCTTTAGTCTGCCAGTGGTTCTGCGATTCATGTG
CTTCTACGAAAACCGGTGTCGTGGCGTCGACTGCGAAACGCTCTAGAGCC
TCGGATTTGCAGGTCAAAAACGGTGATGATTCCTCAGCGTGTGTTGTATG
TGGTGAGAGCGAAACAGTGAACGATAGTGAAGAACAATCGTCATCGTCAG
TTGAGTCCTTCGCACTGAGATGCAACAGCTGCCGACTCTGGTACCACCCC
TGGTGCATGGGATACCAACTTGACCTCGACCGATTGTGTATGATCACTTC
GTCAGAGATCGACGTTCCCATCGATCCCGTTACGGCTATACCTTTAGTCT
GCCAGTGGTTCTGCGATTCATGTGCTTCTACGAAAACCGGTGTCGTGGCG
TCGACTGCGAAACGCTCTAGAGCCTCGGATTTGCAGGTCAAAAACGGT
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