prot_H-elongata_contig72708.14943.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72708.14943.1
Unique Nameprot_H-elongata_contig72708.14943.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.590e-32
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    1 RDGRVLVAYGGSK----------VNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            RDGRVL  +GG +          V     R          D+EEP VKFLMLNP+VHFDEIVQKARA++LVGGTMQPTGDLVRQLF SVEPSRV+VFSCGHVIP
Sbjct:  714 RDGRVLATFGGKEGDGRSSSRGSVGGXXXRGATAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIP 817          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.400e-18
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 0
Query:    1 RDGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            RDGR+++        TGH  Q               +KF+MLN +VHF EIV +AR+V+LVGGTMQP   +V QLFP +  SR+DVFSCGHVIP
Sbjct:  581 RDGRIVL-------ETGHGPQKGRRQMAAG------IKFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIP 661          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.470e-18
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 0
Query:   34 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            E  +KF+ +NP+VHF+EIV KAR+VIL GGTMQP   ++ QLFP V  +R+D+FSCGHVIP
Sbjct:  600 EGAIKFIQMNPAVHFEEIVAKARSVILAGGTMQPVAQVIDQLFPFVPRARIDLFSCGHVIP 660          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A484DR37_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR37_BRELC)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 0
Query:    4 RVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            R++ A+  +  NTG   +            E  ++F++LNP +HF EIV KAR++IL GGTMQP   ++ +LF S+   +VD+FSCGHVIP
Sbjct:  526 RIVEAFLKALTNTGGDGRIFVQPHNASKGAEGLIRFILLNPVIHFQEIVAKARSIILAGGTMQPVSQVIDELFSSIPIEKVDLFSCGHVIP 616          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 0
Query:   34 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            E  +KF+++NP++HF+EIV+KAR+VIL GGTMQP   ++ QLF  +   R+D+FSCGHVIP
Sbjct:  607 EGAIKFILMNPAIHFEEIVEKARSVILAGGTMQPVSQVIDQLFSKIPRDRIDLFSCGHVIP 667          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A662X2D8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2D8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.120e-17
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0
Query:   37 VKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            +KF++LNP++HF E+V+KAR+VIL GGTMQP   ++ QLF SV    VD+FSCGHVIP
Sbjct:  600 IKFILLNPAIHFQEVVEKARSVILAGGTMQPVSQVIDQLFASVPREHVDLFSCGHVIP 657          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A397THS0_9GLOM (ATP-dependent DNA helicase CHL1 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397THS0_9GLOM)

HSP 1 Score: 85.1 bits (209), Expect = 2.890e-17
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 0
Query:    2 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            DGRV++ +    V+   KR+             P+ K+L+LNPS  F +IV+ AR+VIL GGTM+PT DL+ QLFP +   R+  FSCGH+IP
Sbjct:  554 DGRVILGFQQIAVSVEGKREVTTTNYI------PYFKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIEQLFPYLPSQRLSKFSCGHIIP 640          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A015KHZ2_RHIIW (ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015KHZ2_RHIIW)

HSP 1 Score: 84.3 bits (207), Expect = 5.380e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0
Query:    2 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            DGRV++ +    V+   KR              P +K+L+LNPS  F +IV+ AR+VIL GGTM+PT DL+ QL P + P R+  FSCGH+IP
Sbjct:  533 DGRVILGFQQISVSVEGKRGGTTTKYV------PIIKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIGQLIPYLPPQRLSKFSCGHIIP 619          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A329SYA8_9STRA (Putative ATP-dependent DNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SYA8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.340e-17
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0
Query:   34 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            E  ++F++LNP +HF EIV+K+R+VIL GGTMQP   ++ QLF SV    VD+FSCGHVIP
Sbjct:  552 EGLIRFILLNPVIHFQEIVEKSRSVILAGGTMQPVSQVIDQLFSSVPKENVDLFSCGHVIP 612          
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D0MZY5_PHYIT (ATP-dependent RNA helicase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZY5_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-16
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 0
Query:   34 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 94
            E  ++F++LNP++HF EIV K+R+VIL GGTMQP   ++ QLF S+    +D+FSCGHVIP
Sbjct:  515 EGLIRFILLNPAIHFQEIVNKSRSVILAGGTMQPVSQVIDQLFSSIPREHIDLFSCGHVIP 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI1.590e-3264.42Helicase ATP-binding domain-containing protein n=1... [more]
A0A4D9CWW8_9STRA2.400e-1850.00Helicase ATP-binding domain-containing protein n=2... [more]
A0A5D6Y0V7_9STRA4.470e-1862.30Helicase ATP-binding domain-containing protein n=1... [more]
A0A484DR37_BRELC1.550e-1742.86Helicase ATP-binding domain-containing protein n=1... [more]
K3W6Y0_GLOUD1.550e-1757.38Helicase ATP-binding domain-containing protein n=1... [more]
A0A662X2D8_9STRA2.120e-1762.07Helicase ATP-binding domain-containing protein n=2... [more]
A0A397THS0_9GLOM2.890e-1745.16ATP-dependent DNA helicase CHL1 n=1 Tax=Glomus cer... [more]
A0A015KHZ2_RHIIW5.380e-1745.16ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophag... [more]
A0A329SYA8_9STRA7.340e-1759.02Putative ATP-dependent DNA helicase n=2 Tax=Phytop... [more]
D0MZY5_PHYIT1.360e-1655.74ATP-dependent RNA helicase, putative n=2 Tax=Phyto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 27..94
IPR028331ATP-dependent RNA helicase CHL1/DDX11PANTHERPTHR11472:SF41ATP-DEPENDENT DNA HELICASE DDX11-RELATEDcoord: 27..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72708contigH-elongata_contig72708:1077..2047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72708.14943.1mRNA_H-elongata_contig72708.14943.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72708 1077..2048 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72708.14943.1 ID=prot_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
RDGRVLVAYGGSKVNTGHKRQQQQQRQQQLDDEEPFVKFLMLNPSVHFDE
IVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028331CHL1/DDX11