prot_H-elongata_contig72691.14942.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72691.14942.1
Unique Nameprot_H-elongata_contig72691.14942.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length166
Homology
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BLAST of mRNA_H-elongata_contig72691.14942.1 vs. uniprot
Match: D7FPC3_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.480e-49
Identity = 98/176 (55.68%), Postives = 120/176 (68.18%), Query Frame = 0 
Query:    1 SQGASLLYDSLIYPIIVKHLVPIGS--KKNPGAAFAAAGAEAVSTASKAVSSGFSA--------AQGISARGLSAVTVPIVGDLLTPDQTELRVVVVSASDIVPTEAPGATADCDPYCVLEVLPEGSRPKDGAAESTKYKTVCKTGTANPVWNEGVTIPNVKSLDAKLVVTVCNKR 166
            ++GA+ LYD +I P++++H++P  S  K+ P +A                              A+ + + G  AVTVP     ++PD +ELRVVVVSASD+VPTEAPGA  DCDPYCVLEVLPEG+R K GAAE+TKYKTVCKTGTANPVWNEGVTIP V+ LDAKLVVTVCNKR
Sbjct:  137 TRGATHLYDVVIRPLVIQHVLPGSSQAKRAPPSAXXXXXXXXXXXXXXXXXXXXXXXSSPVPEFAERVMSTGAPAVTVP--AGFVSPDLSELRVVVVSASDVVPTEAPGAGVDCDPYCVLEVLPEGTRLKQGAAENTKYKTVCKTGTANPVWNEGVTIPQVEHLDAKLVVTVCNKR 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72691.14942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPC3_ECTSI3.480e-4955.68C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 81..165
e-value: 2.5E-8
score: 34.1
IPR000008C2 domainPROSITEPS50004C2coord: 81..166
score: 8.799
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 72..166
e-value: 5.6E-14
score: 53.9
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 76..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72691contigH-elongata_contig72691:1597..3139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72691.14942.1mRNA_H-elongata_contig72691.14942.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72691 1597..3139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72691.14942.1 ID=prot_H-elongata_contig72691.14942.1|Name=mRNA_H-elongata_contig72691.14942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
SQGASLLYDSLIYPIIVKHLVPIGSKKNPGAAFAAAGAEAVSTASKAVSS
GFSAAQGISARGLSAVTVPIVGDLLTPDQTELRVVVVSASDIVPTEAPGA
TADCDPYCVLEVLPEGSRPKDGAAESTKYKTVCKTGTANPVWNEGVTIPN
VKSLDAKLVVTVCNKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf