mRNA_H-elongata_contig119401.1494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119401.1494.1
Unique NamemRNA_H-elongata_contig119401.1494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119401.1494.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 7.830e-37
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LEAFPALAQVDPDRLDVRAKLRFIRHTMGAEPAIVAVSFPQFFGHPLERHIAPRHAFLVASGRPSGARLVEKACRGLRRMLELPANRCASDI 276
            LE+FP LA VDPD+L + AKLRF+RHT+GAE   VAVSFPQFFGHPLER IAPRHAFLV++GRPSG RL+E  CRGLRRMLELP NR   ++
Sbjct:  213 LESFPTLAHVDPDKLGLPAKLRFLRHTIGAEVRTVAVSFPQFFGHPLERLIAPRHAFLVSNGRPSGDRLLETGCRGLRRMLELPVNRFVVEM 304
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BLAST of mRNA_H-elongata_contig119401.1494.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 9.270e-26
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 LEAFPALAQVDPDRLDVRAKLRFIRHTMGAEPAIVAVSFPQFFGHPLERHIAPRHAFLVASGRPSGA 201
            LE+FP LA VDPD+L + AKLRF+RHT+G E   VAVSFPQFFGHPLER IAPRHAFLVA+GRPSGA
Sbjct:  172 LESFPTLAHVDPDKLGLPAKLRFLRHTIGGEVRTVAVSFPQFFGHPLERLIAPRHAFLVANGRPSGA 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119401.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD8_ECTSI7.830e-3772.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU03_9PHAE9.270e-2677.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119401contigH-elongata_contig119401:78..1333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue3.7e-31
Seed eggNOG ortholog2880.D8LGD8
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119401.1494.1prot_H-elongata_contig119401.1494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119401 78..1333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929698.6985798-CDS-H-elongata_contig119401:77..1601622929698.6985798-CDS-H-elongata_contig119401:77..160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 78..160 -
1691679123.3885503-CDS-H-elongata_contig119401:77..1601691679123.3885503-CDS-H-elongata_contig119401:77..160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 78..160 -
1622929698.7201302-CDS-H-elongata_contig119401:754..8871622929698.7201302-CDS-H-elongata_contig119401:754..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 755..887 -
1691679123.3995783-CDS-H-elongata_contig119401:754..8871691679123.3995783-CDS-H-elongata_contig119401:754..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 755..887 -
1622929698.7413685-CDS-H-elongata_contig119401:1270..13331622929698.7413685-CDS-H-elongata_contig119401:1270..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 1271..1333 -
1691679123.411938-CDS-H-elongata_contig119401:1270..13331691679123.411938-CDS-H-elongata_contig119401:1270..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119401 1271..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119401.1494.1

>prot_H-elongata_contig119401.1494.1 ID=prot_H-elongata_contig119401.1494.1|Name=mRNA_H-elongata_contig119401.1494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
LEAFPALAQVDPDRLDVRAKLRFIRHTMGAEPAIVAVSFPQFFGHPLERH
IAPRHAFLVASGRPSGARLVEKACRGLRRMLELPANRCASDI*
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mRNA from alignment at H-elongata_contig119401:78..1333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119401.1494.1 ID=mRNA_H-elongata_contig119401.1494.1|Name=mRNA_H-elongata_contig119401.1494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-elongata_contig119401:78..1333- (Himanthalia elongata Himel1 dioecious)
CTGGAGGCGTTTCCAGCACTGGCACAAGTTGATCCCGACAGACTTGACGT
GCGCGCAAAACTGGTGAGGGAGGACTAAGTGCTATGGTTACACACCCGGT
GACACACCACGTGTTGCTCGGAAAGCCCGACGGCGGTTTGCTATTAACTA
CCACCCTGGTACGGAGCATTCGCGGATTGACGAATGCGTAAACACTGACA
CACCAGTCTCGGAAAAGCTTGACACCTACTATAGATCGTTCGCGAGATGA
TCGAGTCACTGTCGGTCGATGTTTTCCCGATATCCCGACCTAGCACGGAC
GGCACTGTTTCGTTGGAAATAGGCAGAAGTTGACGCGGGAACTATTTCAA
CGATACTCATGATATCTCGGTCCCACGGTCTTGGCTGGTGTGCCACGACG
ATGACCGATATATTCATTGTTTTTCTCCGTCCTCGCTGCTCTCCAGCGGT
TCATCCGACATACCATGGGGGCCGAACCGGCAATTGTGGCTGTCTCCTTT
CCGCAATTCTTCGGTCATCCCTTAGAGCGACACATTGCGCCTAGACATGC
GTTCCTTGTCGCGAGCGGACGCCCTTCAGGTGCGTAACTTAAAGTTCAGT
TGGGTATACCGCTCCATTTCCTCGCATCCTGGGAATCTTAGGGTGCAACA
GCGCTGAAATATATATATATATATATATAGGGAGAGAGAGAGCTTGCTGA
CGTCTTGGCGAAGGCGGCAAGTCAGACTTGCTAGAATCTGTCTCCCGGTG
CCTGTGGTTTCGTTATTTGAACATCGGTATATAGGGGGGGACTTAGCACT
AGGTATAACTTAATCAGAGGCAAGAGAAAGCAGGATTGGAGTTAGCACTA
GGTATAACTTAATCAGAGGCAAGAGAAAGCAGGATTGGAGTATTAATACA
GACCAAGGCATGAACCATAGATCGTATCCTCTCCGCAAGAGTTCCTCGGG
ATACACGCTCGAAAGAGTGGTGGATTTACTCTCTTTCAACGATTATCACC
TATGCTTCCGGCATAAATCAAATCAGAAGGCAATCAGGCGACACAGTAAG
CACTAACCAAGAAGATACACCGCCGGGAAAGGGAGTCCTGGCGAACCTGA
TTTCCTGTCGCCCTCTCTGGCGCCGCAAAAAGAAAAACGCGCTTCATATT
CGATTACGCGTCCCTACTGGCAGGAGCAAGGCTCGTAGAGAAGGCTTGTC
GAGGCTTGAGGCGAATGCTTGAACTGCCAGCGAACAGGTGCGCGAGCGAT
ATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig119401:78..1333-

>mRNA_H-elongata_contig119401.1494.1 ID=mRNA_H-elongata_contig119401.1494.1|Name=mRNA_H-elongata_contig119401.1494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig119401:78..1333- (Himanthalia elongata Himel1 dioecious)
CTGGAGGCGTTTCCAGCACTGGCACAAGTTGATCCCGACAGACTTGACGT
GCGCGCAAAACTGCTGGAGGCGTTTCCAGCACTGGCACAAGTTGATCCCG
ACAGACTTGACGTGCGCGCAAAACTGCGGTTCATCCGACATACCATGGGG
GCCGAACCGGCAATTGTGGCTGTCTCCTTTCCGCAATTCTTCGGTCATCC
CTTAGAGCGACACATTGCGCCTAGACATGCGTTCCTTGTCGCGAGCGGAC
GCCCTTCAGCGGTTCATCCGACATACCATGGGGGCCGAACCGGCAATTGT
GGCTGTCTCCTTTCCGCAATTCTTCGGTCATCCCTTAGAGCGACACATTG
CGCCTAGACATGCGTTCCTTGTCGCGAGCGGACGCCCTTCAGGAGCAAGG
CTCGTAGAGAAGGCTTGTCGAGGCTTGAGGCGAATGCTTGAACTGCCAGC
GAACAGGTGCGCGAGCGATATTTGAGAGCAAGGCTCGTAGAGAAGGCTTG
TCGAGGCTTGAGGCGAATGCTTGAACTGCCAGCGAACAGGTGCGCGAGCG
ATATTTGA
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