mRNA_H-elongata_contig72532.14923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72532.14923.1
Unique NamemRNA_H-elongata_contig72532.14923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72532.14923.1 vs. uniprot
Match: D8LKG7_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.930e-30
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 ILRYALKYKPEEIPGGRRWLETLRRIPMPMAVLSRLPSSVVDSVLAETDLAGYFP--HRVTKEDEPFDDYRGYMLVS 225
            ILR ALKY+P E  G RRWLETLRRIPMPMAVLSRLPS++VD+VL +T+L+GYF   HRVT EDEP+DDYRGYML +
Sbjct:  370 ILRQALKYQPTETRGSRRWLETLRRIPMPMAVLSRLPSAIVDAVLEKTELSGYFEDQHRVTAEDEPYDDYRGYMLAA 446
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BLAST of mRNA_H-elongata_contig72532.14923.1 vs. uniprot
Match: A0A6H5JLE3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-12
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   31 EEIPGGRRWLETLRRIPMPMA------VLSRLPSSVVDSVLAETDLAGYFP--HRVTKEDEPFDDYRGYMLVS 225
            EE+ GG   LE   R  +  A      VLSRLPS++VD+VL +T+L+GYF   HRVT EDEP+DDYRGYML +
Sbjct:  406 EELEGG---LEIYERTILRQALKYQPTVLSRLPSAIVDAVLEKTELSGYFEDQHRVTAEDEPYDDYRGYMLAA 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72532.14923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKG7_ECTSI7.930e-3074.03Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A6H5JLE3_9PHAE1.210e-1254.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72532contigH-elongata_contig72532:396..2647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.5e-25
Seed eggNOG ortholog2880.D8LKG7
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size240
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72532.14923.1prot_H-elongata_contig72532.14923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72532 396..2647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.2438724-CDS-H-elongata_contig72532:395..5421622931127.2438724-CDS-H-elongata_contig72532:395..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 396..542 -
1691679709.020614-CDS-H-elongata_contig72532:395..5421691679709.020614-CDS-H-elongata_contig72532:395..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 396..542 -
1622931127.2636986-CDS-H-elongata_contig72532:2078..21381622931127.2636986-CDS-H-elongata_contig72532:2078..2138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 2079..2138 -
1691679709.0340512-CDS-H-elongata_contig72532:2078..21381691679709.0340512-CDS-H-elongata_contig72532:2078..2138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 2079..2138 -
1622931127.2773926-CDS-H-elongata_contig72532:2614..26471622931127.2773926-CDS-H-elongata_contig72532:2614..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 2615..2647 -
1691679709.0512652-CDS-H-elongata_contig72532:2614..26471691679709.0512652-CDS-H-elongata_contig72532:2614..2647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72532 2615..2647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72532.14923.1

>prot_H-elongata_contig72532.14923.1 ID=prot_H-elongata_contig72532.14923.1|Name=mRNA_H-elongata_contig72532.14923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
ILRYALKYKPEEIPGGRRWLETLRRIPMPMAVLSRLPSSVVDSVLAETDL
AGYFPHRVTKEDEPFDDYRGYMLVSQAAI*
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mRNA from alignment at H-elongata_contig72532:396..2647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72532.14923.1 ID=mRNA_H-elongata_contig72532.14923.1|Name=mRNA_H-elongata_contig72532.14923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-elongata_contig72532:396..2647- (Himanthalia elongata Himel1 dioecious)
ATCCTGAGGTACGCCCTCAAGTACAAGCCAGAGGTGAGAAGGGCACCTTC
ACCCATCATATGAATTGATAAGATATGTGGAGGGATTATTCGTTGGTGAG
GGAAGGAGGAGCTGCCTCGTTGGGTTCTGAGGCGATCACTCTGCTGAAGT
TTGATTTTTTTAGTGCGTTCGAGGCGTGTAACACGGACATAGGTACGGAT
ATCGCAGTCTCTCGAAAACATCGCACCCCTATATACGCTTGTATTAGCTC
ATTCTGTACTCCGTAGTACTTTTGATACTCCATACAGTAGGTTGGGGAGT
CAGGCAGAGGCGCGAAATGTTGAAGTCGACGTTCTCGCTTTCTCTTGTTT
TTGCACAAAATGCATGTTTTTTGTGATGTAGTATTTGTATGTGTCTCTGT
GTGTGTGTGTGTTGCTTGTGAAATGTTTTCTTTTGTGCAGTACGTAAACT
CCTCATGTGTTCATGTTGTTTGTGTTTTGTGTCTGCTCAACTGCCCCTTA
CCCCCACAGGAAATTCCCGGCGGCAGACGATGGTTAGAGACCCTTCGAAG
AATACCCATGCCTATGGCGGTGAGAAAACCCCGAACTCATACTAGGGACA
GTAGTATTATTATAGTAGTATATTTTCATTTGATAAAATAGCCTTTTCTT
TTAAGTAGCATATAATATAGTAAATATATATATTTTAGCTCTTTAACCTT
TTCGGAGCTGGATTTCAAGTTTTATATTGAATTTAGTCTGTAAAAAACAG
ATCGGGTTCCATAGGGGTTAAAGAGCACCAGGCAGTTAATAGAGTTGAAA
CCAATGACGGTGAGAATGTTATTTATTTATTTTCTATCGAAATAATATTA
ATAGCTGTATTTACTGGGGGGTGGGTCGACAAGCGTTCGACAAGCGTTCG
ACAAGCGTTGGACAAGCGTTGGACACACCATAGGTCTTGCTAGAGAGCTT
AAACTCATGTTCTGCTTGTGTCCTTACGGCGTCCCTGGTACTTCAAAAAT
ATATACCGTCCCACGTTGCCTTCTGTTTGTAGCCGCCCTCAAACGTCCTT
GAGCGTGGACGTTTACCGTAGAGCCCATGGGATATAATGTAGAGCGCATG
GAATATATTAACGCCCCACCACGCGTCATGCGTATTAGCGACAGGATATC
TTACCAAGCAGACTGCTCAAGAGCTGACTAGTGTAGTAGTTGCTGAAGCG
TCCCCAAGTTCGGGAGGGTAAAATTGAGACTCTTCCCCCTACCGGGGATC
TTATCGTTTCATCCCCGGTCGTAGTGTCTTACATCGGATACATGAGTACC
GTAGAGGAGGGGATGGGTACGTTTTATCCCCGGAGGAAAGGTACGGTTTT
AATCCATACTTTCCCCGACTCGGGGACGTTTAGCCCCCCCCCCATCCCCC
TCCGCTATCGTTGGGTCCTCAAAAGTCTTGGTTTTCACGGGCATGAATAC
AAAACGCTCTCCTCTCTCCAGCTTGATCTTTTTGTCTAAAGCTGAAAACT
AAGCCAGAAGTCGTGTATATTTCCCCCCCAGTTTAATGTCCTCGAGGTGC
TCTCCCTCGCACAATCACTCGCAGTCTCTTTTTCTTGTTTTCTCGGAATG
GTTTAATTTAATTTAATTTAATTAATTTAGTTTCTTTTTCGTTTTAAATT
TCATGTAGGCCCATTTTTTATTTTTTTCCATTTTTTAATATCCTGCTATA
TTTTATTTATTTTTATTTTTTCAGGTTTGGGTTGGAAATAAAAAAGAGAC
GCTTGTACAAAAAGCCGAAAAATGGGTCAACACCCAAATATCATAGACCG
GCCTTATTCGGTGAAGACATATATTATCCCCTATCCCCTACTCTCACTAT
GAATAGTTACACGGATAAGGTACATACGGTTATGATGGTTAGGCCCTAAT
CGAAGACCAGATTAGAGTCATAACCAATATTTCCTCCTGAAAAAGCGCGA
CTATGTAGGCCGGCCGTGTCCGTGCGTCGTCAGTGATGCTCGCCGCTCCG
CCAACGATTTGCCCCCCCCGCCTCTCCAAAATTTAAGTTCACCCCTCCCC
CCTCGCTCGTATTGCCCCCCCCCCTTCTCTATCAACCCCCGATGCGGTAC
CACAGGTGCTTTCGAGGCTGCCATCTTCCGTGGTGGACTCAGTGCTGGCA
GAGACCGATCTTGCGGGTTATTTTCCCCATCGAGTGACAAAGGAAGATGA
GCCCTTCGATGATTACAGGGGCTACATGCTGGTAAGTCAAGCAGCCATTT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig72532:396..2647-

>mRNA_H-elongata_contig72532.14923.1 ID=mRNA_H-elongata_contig72532.14923.1|Name=mRNA_H-elongata_contig72532.14923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig72532:396..2647- (Himanthalia elongata Himel1 dioecious)
ATCCTGAGGTACGCCCTCAAGTACAAGCCAGAGATCCTGAGGTACGCCCT
CAAGTACAAGCCAGAGGAAATTCCCGGCGGCAGACGATGGTTAGAGACCC
TTCGAAGAATACCCATGCCTATGGCGGAAATTCCCGGCGGCAGACGATGG
TTAGAGACCCTTCGAAGAATACCCATGCCTATGGCGGTGCTTTCGAGGCT
GCCATCTTCCGTGGTGGACTCAGTGCTGGCAGAGACCGATCTTGCGGGTT
ATTTTCCCCATCGAGTGACAAAGGAAGATGAGCCCTTCGATGATTACAGG
GGCTACATGCTGGTAAGTCAAGCAGCCATTTAAGTGCTTTCGAGGCTGCC
ATCTTCCGTGGTGGACTCAGTGCTGGCAGAGACCGATCTTGCGGGTTATT
TTCCCCATCGAGTGACAAAGGAAGATGAGCCCTTCGATGATTACAGGGGC
TACATGCTGGTAAGTCAAGCAGCCATTTAA
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