mRNA_H-elongata_contig72296.14903.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 6.350e-16 Identity = 58/159 (36.48%), Postives = 76/159 (47.80%), Query Frame = 1
Query: 40 PDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALP--LRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHP-YSRLSPSLADAADGVVKLPAKLEAARKILGE 507
PDPV +E+VQFYL Y G N R +Q+ ++ ++ P E+ G T+ P +RVGFVSKFFG+ EPHG+LLEGV++HLPR F V V PIA P S LA AD + L R+ + E
Sbjct: 399 PDPVSSVEQVQFYLPYAGLNDRFLQEALSDIYRRLCP--------------------------------ELSWLGYTTISTEPNKIRVGFVSKFFGEHEPHGLLLEGVVQHLPRRLFQVIVLPIASPGRPAASKLLAQVADELTPLGLNFLHTRRTIAE 525
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.410e-14 Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 1
Query: 31 LVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHP-YSRLSPSLADAADGVVKLPAKLEAARKIL 501
L+I DPV +E V FYL Y G + R +Q+ +AR + P + P L + E + R R+GF+SK F + EPHG+LLEGV++HLPR+ F V V P+A P S L +AD +++L + R L
Sbjct: 450 LIIDDPVVEVEHVHFYLPYPGLDDRPLQEAVARCYERMIPQLAGPVPGL--SPEPVRVRRA--------------------------RIGFLSKLFAEHEPHGLLLEGVVQHLPRDRFVVVVLPVASPGRDAASELLRSSADELIELGLNMRENRLTL 579
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.500e-14 Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 1
Query: 31 LVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHP-YSRLSPSLADAADGVVKLPAKLEAARKIL 501
L+I DPV +E V FYL Y G + R +Q+ +AR + P + P L + E + R R+GF+SK F + EPHG+LLEGV++HLPR+ F V V P+A P S L +AD +++L + R L
Sbjct: 450 LIIDDPVVEVEHVHFYLPYPGLDDRPLQEAVARCYERMIPQLAGPVPGL--SPEPVRVRRA--------------------------RIGFLSKLFAEHEPHGLLLEGVVQHLPRDRFVVVVLPVASPGRDAASELLRSSADELIELGLNMRENRLTL 579
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: W4H2F0_9STRA (Glyco_transf_41 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2F0_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.320e-12 Identity = 53/170 (31.18%), Postives = 83/170 (48.82%), Query Frame = 1
Query: 1 VEDLIRSDPPLVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGVVKLPAKLEAARKILGEL 510
++ L+ L + +P R FYLVY+G N +Q K+A +H+ + P + +P + GV T F++ T + L R+GF+SKFF HGMLL GV+ HL R+ FHVT+ + P ++ +A AAD V L L +++ + L
Sbjct: 364 IDALLLLASSLHVENPEAFEIRPPFYLVYQGYNDLHLQTKLATLHSHSCPALHFTAPHIAL----------GVGTLFEFDK---------TFRRL--RIGFMSKFFVPNHAHGMLLRGVLAHLNRQLFHVTLVVVPDPQQQVDAGMAAAADAVKVLSMHLAHSQQEIAAL 512
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A485KTM2_9STRA (Aste57867_11675 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM2_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.790e-12 Identity = 50/148 (33.78%), Postives = 71/148 (47.97%), Query Frame = 1
Query: 22 DPPLVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALP--LRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGV 459
+ PL + +P R F LVY+G N R I +AR+H A P +L +P + G+ + F+ A P LR+GF+SKFF D HG+LL GV+ HL R F VT+ + P + P++A A D V
Sbjct: 389 EEPLTVDNPEEFEIRPPFLLVYQGMNDRAILTTLARIHARACPSLLFTAPHV----------HAGLGSLAAFD-------------ATPRRLRIGFMSKFFVDNHAHGLLLRGVLAHLDRNVFDVTLLVVPDPQQSVDPAMAAAVDDV 513
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A024UQX4_9STRA (Protein O-GlcNAc transferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQX4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.310e-12 Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 64 RVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGVVKLPAKLEAARKILGEL 510
R FYLVY+G N D+Q K+A++H+ + + +P +R GV + + F+ S R L VGF+SKFF HGMLL GV++HL R+ FHVT+ + P + ++A AAD + L L ++ L L
Sbjct: 384 RPPFYLVYQGRNDVDLQTKLAKVHSNSCAALHFEAP----------HTRVGVGSLIAFD-----STPRR------LHVGFMSKFFVSNHAHGMLLRGVLQHLNRKLFHVTLVVVPDPQQPVDSAMAAAADDIKVLSMHLAHCQQDLAAL 511
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A835YUZ8_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 7.610e-11 Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 1
Query: 1 VEDLIRSDPPLVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGVVKLPAKLEAARKILGEL 510
V++L DPPL + R + RV F LVY G N R Q+ ++ M+ +P L+ +F A + +G + +RV FVS F G EPHGML+ GV+R LPR F V + I + PSLA AA+ V+ L + K++GEL
Sbjct: 421 VQELAARDPPLRLTSFDR-VPRVHFNLVYDGLNNRATQEAVSTMYRRVDGLFTGTAPHLQ------DFFNDPSAPL-----RQPPPDGSKP----RIRVVFVSAFLGQFEPHGMLVAGVVRGLPRPEFEVILARIPAKDRPVEPSLAAAAEDVINLAYNYDHNIKVMGEL 574
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.930e-10 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 1 VEDLI-RSDPPLVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTL 141
V++LI R DPPL +PDP RG+ERV FYLVYRGGN R IQQKIAR+ L
Sbjct: 501 VDNLIARDDPPLSMPDPARGVERVHFYLVYRGGNYRLIQQKIARLDVL 548
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A661TAT4_9DELT (Protein O-GlcNAc transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661TAT4_9DELT) HSP 1 Score: 60.5 bits (145), Expect = 1.520e-7 Identity = 48/152 (31.58%), Postives = 67/152 (44.08%), Query Frame = 1
Query: 37 IPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGVVKLPAKLEAAR 492
+ DP++ + F L Y G N R IQ+++A + A P + SP + E GG +R+G +S+F G L G+IRHL RE FHVTV LS ++ +AD VV LP +LE AR
Sbjct: 382 LDDPLKQVGVTTFLLAYHGLNDRKIQERMASFYIGACPELQWTSPHCRAPERS-----GG-----------------------KIRIGVISRFLYGHTI-GQLFHGMIRHLSREKFHVTVFRSEGTEDALSRAIDQSADEVVSLPCELEPAR 504
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Match: A0A397DKH7_9STRA (Glyco_transf_41 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DKH7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.970e-7 Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 118 KIARMHTLASPGILSVSPALKQTEEGINFSRGGVATTVRFERLEMVSNGMRTVKALPLRVGFVSKFFGDEEPHGMLLEGVIRHLPREHFHVTVCPIAHPYSRLSPSLADAADGVVKLPAKLEAARKIL 501
K+A +H+ + P + +P + GV T F++ T + L R+GF+SKFF HGMLL GV+ HL R+ FHVT+ + P ++ ++A AAD V L L +++ L
Sbjct: 263 KLATLHSHSCPALHFTAPHIAL----------GVGTLFEFDK---------TFRRL--RIGFMSKFFVPNHAHGMLLRGVLAHLNRQLFHVTLVVVPDPQQQVDAAMAAAADAVKVLSMHLAHSQQAL 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72296.14903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72296.14903.1 >prot_H-elongata_contig72296.14903.1 ID=prot_H-elongata_contig72296.14903.1|Name=mRNA_H-elongata_contig72296.14903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp VEDLIRSDPPLVIPDPVRGLERVQFYLVYRGGNLRDIQQKIARMHTLASPback to top mRNA from alignment at H-elongata_contig72296:1349..2592+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72296.14903.1 ID=mRNA_H-elongata_contig72296.14903.1|Name=mRNA_H-elongata_contig72296.14903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-elongata_contig72296:1349..2592+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72296:1349..2592+ >mRNA_H-elongata_contig72296.14903.1 ID=mRNA_H-elongata_contig72296.14903.1|Name=mRNA_H-elongata_contig72296.14903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig72296:1349..2592+ (Himanthalia elongata Himel1 dioecious)back to top |