prot_H-elongata_contig7228.14901.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7228.14901.1
Unique Nameprot_H-elongata_contig7228.14901.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
[Close]
BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.520e-10
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0 
Query:   11 GGVTDDEPATASTAAGTRRPLLDDDNRNVKIAAAGLSDDPLSLMMEERAIATNMYRHMGDLLDHHEAD-LMMSYRSSGS 88
            GGV D   +T + A  T+  + +D  R+VK+A AGLSDDPLS+MM+ERA+A NM RH G +LD    D  +M+  S GS
Sbjct:  170 GGVAD---STTAHAPETQLAVFNDVERDVKVAVAGLSDDPLSMMMQERAVARNMSRHGGGVLDDDMLDGAIMTPGSPGS 245
[Close]
BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Match: A0A6H5JPH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.340e-6
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:   38 NVKIAAAGLSDDPLSLMMEERAIATNMYRHMGDLLDHHEAD-LMMSYRSSGS 88
            +VK+A AGLSDDPLS+MM+ERA+A NM RH G + D+   D  +M+  S GS
Sbjct:  192 DVKVAVAGLSDDPLSMMMQERAMARNMSRHGGSVPDNDMLDDAIMTPGSPGS 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLV5_ECTSI5.520e-1049.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPH3_9PHAE2.340e-655.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7228contigH-elongata_contig7228:2120..3872 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7228.14901.1mRNA_H-elongata_contig7228.14901.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7228 2119..3872 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7228.14901.1 ID=prot_H-elongata_contig7228.14901.1|Name=mRNA_H-elongata_contig7228.14901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
DGSQARQDLGGGVTDDEPATASTAAGTRRPLLDDDNRNVKIAAAGLSDDP
LSLMMEERAIATNMYRHMGDLLDHHEADLMMSYRSSGSLLAV
back to top