prot_H-elongata_contig72029.14879.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72029.14879.1
Unique Nameprot_H-elongata_contig72029.14879.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: D8LIS8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIS8_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 6.690e-45
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 0
Query:    1 MQTQLALGNQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVF 100
            MQ QLA GNQ YLESRS AVQEVEGHIAELGLIFNKLATMLQDQREMVES+HDNVEDAG SV +GHL LL T+ SL+SNRRLALSV+GIL+LF LFFFVF
Sbjct:  274 MQMQLASGNQGYLESRSSAVQEVEGHIAELGLIFNKLATMLQDQREMVESVHDNVEDAGESVNQGHLALLNTMRSLSSNRRLALSVSGILLLFALFFFVF 373          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A835ZBM9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.290e-31
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0
Query:   10 QSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            Q YLE+RS A+QEVE HI ELG +FN+LATMLQDQRE+VES+HDNVEDA A+V RG L LLGTL +L SNR L   V+GIL+LF+L F +F+A
Sbjct:  261 QGYLEARSTAMQEVESHILELGTVFNRLATMLQDQRELVESVHDNVEDAEANVNRGQLALLGTLRALQSNRMLVAKVSGILVLFVLLFIIFLA 353          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: K0RUC7_THAOC (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUC7_THAOC)

HSP 1 Score: 95.5 bits (236), Expect = 7.580e-21
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0
Query:    9 NQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            +Q+YL  R++A+ +VE +I ELG IFNKLA M+ + R+MV+ + DNVEDA A++     TL  TL SL +NR LA  V GIL+LF++FF +F A
Sbjct:  409 DQNYLRQRADAMSQVESNIVELGTIFNKLAVMVNEHRDMVQRVEDNVEDANATINLSMATLTDTLQSLQTNRMLAAKVLGILVLFIIFFIIFFA 502          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A7S0UK78_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UK78_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.440e-19
Identity = 42/94 (44.68%), Postives = 69/94 (73.40%), Query Frame = 0
Query:    9 NQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            +Q YL+SR++A+++VE +I ELG ++N+LATM+ + ++MV+ + DNV++A + V  G   L+ TL +L SN+ LAL V  IL++F++ F VF A
Sbjct:   23 DQDYLQSRADAMEQVESNIVELGAVYNRLATMVHEHKDMVQRVEDNVDEANSMVTMGMNQLVDTLSNLRSNKGLALKVFSILVVFIISFIVFFA 116          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: B8C5I2_THAPS (Syntaxin (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5I2_THAPS)

HSP 1 Score: 89.4 bits (220), Expect = 2.760e-19
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 0
Query:    9 NQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            +Q YL  R++A+ +VE +I ELG IFNKLA M+ + REMV+ + DNVED  A+V     TL  TL  L +NR L + V GIL+LF++ F +F A
Sbjct:  202 DQDYLRQRADAMTQVESNIVELGTIFNKLAVMVNEHREMVQRVEDNVEDTNANVNLSLATLTDTLRDLQTNRALGMKVLGILVLFIIMFIIFFA 295          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A5D6Y1T5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1T5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-19
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    2 QTQLALGNQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            Q Q+    Q+Y ESR+EAV ++E HI ++G +F +LAT+L +Q ++V  I DNV+D  A+V  G   LL  L SL++NR LAL V+ IL +FL+FF  F+A
Sbjct:  227 QEQVVAEQQNYTESRAEAVSQIESHIVDIGQMFGRLATILHEQEDLVRRIDDNVDDTLANVSAGENELLKYLSSLSNNRMLALKVSAILFVFLVFFMFFLA 327          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A662WQG6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQG6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.980e-19
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    2 QTQLALGNQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            Q Q+    QSY ESR+EAV ++E HI ++G +F +L+T++ +Q ++V  I DNVE++  +V  G   LL    SL++NR LAL V+ IL+LFL+FF  F+A
Sbjct:  147 QEQIVAEQQSYTESRAEAVTQIESHIVDIGQLFGRLSTLIHEQGDLVRRIDDNVEESLVNVSSGENELLKYFSSLSNNRMLALKVSAILLLFLVFFMFFLA 247          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A7S2LH53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LH53_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.030e-19
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    9 NQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            +Q YL  R++A+ +VE +I ELG IFNKLA M+ + R+MV+ + DNVEDA +++     TL  TL +L +NR LA+ V GI++LF++ F +F A
Sbjct:  289 DQDYLRQRADAMSQVESNIVELGTIFNKLAVMVNEHRDMVQRVEDNVEDANSNLNLSLATLTDTLQNLQTNRALAMKVLGIVVLFIMMFIIFFA 382          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A7S2G6S2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6S2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-18
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    9 NQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVF 100
            +QSYL  R++A+ E+EGHI ELG +FN+L ++++D REM E + DNV+DA  + E  H  L+ T + L S R L   ++ IL  F +F+ VF
Sbjct:   47 DQSYLAERADAMTEIEGHILELGEVFNRLGSLVEDHREMTERLRDNVDDAMENTEMAHQRLMRTFNQLTSGRSLTYKISAILFFFFVFWVVF 138          
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Match: A0A1Z5K5K4_FISSO (Syntaxin 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5K4_FISSO)

HSP 1 Score: 88.2 bits (217), Expect = 1.690e-18
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 0
Query:    1 MQTQLALGNQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVESIHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVFVA 102
            +Q QL + +Q YL+ R++A+ +VE +I ELG IFNKLA M+Q+ REMV+ + DNV+DA  ++      L  TL SL +NR LAL V  +L+LF++ F +F A
Sbjct:  269 LQQQL-IPDQDYLQQRADAMSQVESNIVELGTIFNKLAVMVQEHREMVQRVDDNVQDANTNINMSMEVLTDTLMSLRTNRMLALRVFSVLVLFIIAFIIFFA 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72029.14879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIS8_ECTSI6.690e-4584.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835ZBM9_9STRA1.290e-3167.74Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
K0RUC7_THAOC7.580e-2151.06t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S0UK78_9STRA1.440e-1944.68Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
B8C5I2_THAPS2.760e-1948.94Syntaxin (Fragment) n=1 Tax=Thalassiosira pseudona... [more]
A0A5D6Y1T5_9STRA4.170e-1947.52t-SNARE coiled-coil homology domain-containing pro... [more]
A0A662WQG6_9STRA6.980e-1945.54t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2LH53_9STRA7.030e-1946.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2G6S2_9STRA1.080e-1844.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5K5K4_FISSO1.690e-1847.06Syntaxin 5 n=2 Tax=Fistulifera solaris TaxID=15195... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 5..72
e-value: 4.6E-11
score: 52.8
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 10..72
score: 14.014
NoneNo IPR availableGENE3D1.20.5.110coord: 1..102
e-value: 2.3E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR19957:SF3SYNTAXIN-5coord: 3..101
NoneNo IPR availablePANTHERPTHR19957SYNTAXINcoord: 3..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..101
NoneNo IPR availableTMHMMTMhelixcoord: 82..101
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72029contigH-elongata_contig72029:1925..3046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72029.14879.1mRNA_H-elongata_contig72029.14879.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72029 401..3081 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72029.14879.1 ID=prot_H-elongata_contig72029.14879.1|Name=mRNA_H-elongata_contig72029.14879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MQTQLALGNQSYLESRSEAVQEVEGHIAELGLIFNKLATMLQDQREMVES
IHDNVEDAGASVERGHLTLLGTLDSLNSNRRLALSVTGILILFLLFFFVF
VA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR010989SNARE