mRNA_H-elongata_contig119338.1488.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: D8LE09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE09_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 5.340e-21 Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
+ RCADCG PCADWASV+HG+FVCL CAG R+LG+HV FTRSL MD+WT E R
Sbjct: 362 NSRCADCGAPCADWASVAHGSFVCLKCAGQQRSLGMHVIFTRSLVMDKWTDESLR 416
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A6H5K7B0_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 6.770e-21 Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query: 19 RCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTG 165
RCADCG PCADWASV+HG+FVCL CAG HR+LG+ V FTRSL MD+WTG
Sbjct: 482 RCADCGAPCADWASVAHGSFVCLKCAGQHRSLGMQVIFTRSLVMDKWTG 530
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: Q01CE5_OSTTA (Arf GTPase activating protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01CE5_OSTTA) HSP 1 Score: 82.0 bits (201), Expect = 1.120e-16 Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
+R CADCGG DWASV+HGAF+CL+C+G HR+LG+HV+F RS TMD W+ ++
Sbjct: 12 NRSCADCGGANPDWASVNHGAFLCLSCSGIHRSLGVHVSFVRSATMDSWSVDQ 64
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: C1E391_MICCC (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E391_MICCC) HSP 1 Score: 76.6 bits (187), Expect = 1.800e-16 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
++ CADC DWASV HG F+CLNC+G HR+LG+HV+F RS TMD WT E R
Sbjct: 23 NQVCADCPTRNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTQAEAR 77
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A7S0IGQ4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGQ4_MICPS) HSP 1 Score: 77.4 bits (189), Expect = 2.090e-16 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
++ CADC DWASV HG F+CLNC+G HR+LG+HV+F RS TMD WT E R
Sbjct: 37 NQVCADCPARNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTKAEAR 91
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A4P9Z5F0_9FUNG (Arf-GAP domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z5F0_9FUNG) HSP 1 Score: 76.6 bits (187), Expect = 2.370e-16 Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
+R C DCG P WASV+ G F C++C+G HRALG+HV+F RS+TMD+W ++
Sbjct: 19 NRTCIDCGAPSPQWASVTLGTFFCIDCSGQHRALGVHVSFVRSITMDKWAPDQ 71
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A1E3HWG2_9TREE (ADP-ribosylation factor GTPase-activating protein 1 n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3HWG2_9TREE) HSP 1 Score: 80.5 bits (197), Expect = 3.230e-16 Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENRG 180
++ C DC PC WASVS+G F+CL C+G HR LG+H++F RS+TMD+W+ E+ G
Sbjct: 19 NKVCVDCSAPCPQWASVSYGIFICLECSGVHRGLGVHISFVRSITMDKWSDEQLGG 74
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A2G4SQF8_RHIZD (Arf GTPase activating protein n=3 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A2G4SQF8_RHIZD) HSP 1 Score: 75.1 bits (183), Expect = 6.750e-16 Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEE 171
+R C DC P WASVS+G F+CLNC+G HR+ G+H++F RS+TMD+W ++
Sbjct: 16 NRLCFDCSAPNPQWASVSYGIFICLNCSGVHRSFGVHISFVRSITMDKWFDDQ 68
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: G7E0V5_MIXOS (Arf-GAP domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E0V5_MIXOS) HSP 1 Score: 79.0 bits (193), Expect = 1.310e-15 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
++ C DC P WASVSHG ++CLNC+G HR+LG+H++F RSLTMD+W+ + R
Sbjct: 19 NKLCCDCKAPMPQWASVSHGTYICLNCSGVHRSLGVHISFVRSLTMDKWSEAQVR 73
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Match: A0A4D9D8B9_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8B9_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.380e-15 Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 13 DRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMDRWTGEENR 177
++ CADC P WASVS+G+F+CL+C+G HRALG+H++F RS+TMD WT ++ R
Sbjct: 19 NKVCADCPAPNPQWASVSYGSFICLDCSGQHRALGVHLSFVRSITMDSWTDKQIR 73 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119338.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119338.1488.1 >prot_H-elongata_contig119338.1488.1 ID=prot_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp NYIYDRRCADCGGPCADWASVSHGAFVCLNCAGHHRALGLHVAFTRSLTMback to top mRNA from alignment at H-elongata_contig119338:1484..1684- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119338.1488.1 ID=mRNA_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig119338:1484..1684- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119338:1484..1684- >mRNA_H-elongata_contig119338.1488.1 ID=mRNA_H-elongata_contig119338.1488.1|Name=mRNA_H-elongata_contig119338.1488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig119338:1484..1684- (Himanthalia elongata Himel1 dioecious)back to top |