mRNA_H-elongata_contig71800.14853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71800.14853.1
Unique NamemRNA_H-elongata_contig71800.14853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A6H5LM37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM37_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 7.200e-24
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    7 LQAQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            LQAQRDALELEA++IASEL SPG+NGE PVG+ G+LVD+ GFPL+GFDLFNVREKRHR
Sbjct:   30 LQAQRDALELEADAIASELKSPGANGEAPVGVKGALVDADGFPLAGFDLFNVREKRHR 87
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A7S3NNK9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNK9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.540e-8
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   19 RDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            R+ LE EA +I SEL +P   G  P G+NGSLVD++GFP +  DL+ VR  R+R
Sbjct:   24 RENLEAEAEAIESELKNPTPQGGKPPGVNGSLVDNEGFPRADVDLYRVRHLRNR 77
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A7S2RVR4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVR4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.340e-7
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   31 ELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            E EA  +   L SPG NG PP+G+ G LVD QGFP    D++ +R +R+R
Sbjct:   27 EEEATMLLEVLNSPGPNGSPPIGLQGGLVDEQGFPRGDVDVYKIRTQRNR 76
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A448ZSK9_9STRA (Nas2_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSK9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.090e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 LQAQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            L AQR A++ EA++I +EL +P   G  P+G++  LVD +G+P    D++  R +R+R
Sbjct:   24 LDAQRTAIQEEADAIIAELTTPPREGVEPMGLDTPLVDQEGYPRGDIDVYRARSQRNR 81
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A8K1FDY5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDY5_PYTOL)

HSP 1 Score: 50.4 bits (119), Expect = 9.840e-6
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 QLQAQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRH 177
            QL AQ+DA+E E  +IA EL S    G    G+ G LVD+ GFP +  D++ VR +RH
Sbjct:   15 QLSAQKDAIEAEIAAIAEELTS----GVNAPGLQGPLVDADGFPRADIDVYRVRHQRH 68
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: R7QSK6_CHOCR (Nas2_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSK6_CHOCR)

HSP 1 Score: 48.5 bits (114), Expect = 5.210e-5
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 MQLQAQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            + L  +++A+E+E   I SEL    +NG P  G+NG+L+D+QGFP S  D+  VR +R+R
Sbjct:   14 LDLDKKKEAMEVEMAKIVSELT---ANGGP--GMNGNLLDAQGFPRSDIDVHGVRNQRNR 68
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A1R2D506_9CILI (Nas2_N domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D506_9CILI)

HSP 1 Score: 48.1 bits (113), Expect = 5.330e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   19 RDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            RD +E E  S+   L +PG  G     + GSLVD++GFPL+G DL+ VR+ R +
Sbjct:   13 RDKIEKEIVSLVEYLTAPGMPG-----LKGSLVDAEGFPLAGVDLYQVRQARQK 61
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A7S0KNR2_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KNR2_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 5.970e-5
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   19 RDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            R  +ELE  +I++ L +PG+ G     + GSLVD +GFP++G DL+ VR  R R
Sbjct:   15 RKLMELEMGTISARLSAPGAPG-----LKGSLVDREGFPIAGCDLYAVRSDRQR 63
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BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Match: A0A7S0DG52_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DG52_MICPS)

HSP 1 Score: 47.8 bits (112), Expect = 7.130e-5
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   13 AQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFDLFNVREKRHR 180
            A R+A+E E  SIA  L  PG+ G     + G LVD +GFP+ G DL+ VR  R R
Sbjct:   27 AAREAMETEMASIAGRLSQPGAPG-----LKGPLVDKEGFPIPGVDLYAVRADRGR 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71800.14853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5LM37_9PHAE7.200e-2481.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NNK9_9STRA1.540e-851.85Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RVR4_9STRA1.340e-748.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A448ZSK9_9STRA6.090e-639.66Nas2_N domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A8K1FDY5_PYTOL9.840e-646.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R7QSK6_CHOCR5.210e-543.33Nas2_N domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1R2D506_9CILI5.330e-544.44Nas2_N domain-containing protein n=2 Tax=Stentor c... [more]
A0A7S0KNR2_9CHLO5.970e-544.44Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A7S0DG52_MICPS7.130e-546.43Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71800contigH-elongata_contig71800:2515..2697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue8.2e-19
Seed eggNOG ortholog2880.D8LKY7
Preferred nameNAS2
KEGG koko:K06693,ko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009987,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030163,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S Proteasome non-ATPase regulatory subunit
EggNOG OGsCOG0265@1,KOG3129@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko03051,ko04031,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.9421144-CDS-H-elongata_contig71800:2514..26971622931118.9421144-CDS-H-elongata_contig71800:2514..2697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71800 2515..2697 +
1691679705.988014-CDS-H-elongata_contig71800:2514..26971691679705.988014-CDS-H-elongata_contig71800:2514..2697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71800 2515..2697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71800.14853.1prot_H-elongata_contig71800.14853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71800 2515..2697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71800.14853.1

>prot_H-elongata_contig71800.14853.1 ID=prot_H-elongata_contig71800.14853.1|Name=mRNA_H-elongata_contig71800.14853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MQLQAQRDALELEANSIASELISPGSNGEPPVGINGSLVDSQGFPLSGFD
LFNVREKRHR*
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mRNA from alignment at H-elongata_contig71800:2515..2697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71800.14853.1 ID=mRNA_H-elongata_contig71800.14853.1|Name=mRNA_H-elongata_contig71800.14853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig71800:2515..2697+ (Himanthalia elongata Himel1 dioecious)
ATGCAACTGCAAGCTCAAAGGGACGCCCTTGAGCTAGAGGCGAATTCGAT
AGCGAGCGAGCTCATTTCTCCGGGGTCGAACGGGGAGCCTCCGGTAGGCA
TCAACGGGTCTCTCGTGGATTCACAGGGTTTCCCTCTCTCTGGGTTCGAT
CTGTTCAACGTCCGCGAGAAGAGGCATCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71800:2515..2697+

>mRNA_H-elongata_contig71800.14853.1 ID=mRNA_H-elongata_contig71800.14853.1|Name=mRNA_H-elongata_contig71800.14853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig71800:2515..2697+ (Himanthalia elongata Himel1 dioecious)
ATGCAACTGCAAGCTCAAAGGGACGCCCTTGAGCTAGAGGCGAATTCGAT
AGCGAGCGAGCTCATTTCTCCGGGGTCGAACGGGGAGCCTCCGGTAGGCA
TCAACGGGTCTCTCGTGGATTCACAGGGTTTCCCTCTCTCTGGGTTCGAT
CTGTTCAACGTCCGCGAGAAGAGGCATCGGTAAATGCAACTGCAAGCTCA
AAGGGACGCCCTTGAGCTAGAGGCGAATTCGATAGCGAGCGAGCTCATTT
CTCCGGGGTCGAACGGGGAGCCTCCGGTAGGCATCAACGGGTCTCTCGTG
GATTCACAGGGTTTCCCTCTCTCTGGGTTCGATCTGTTCAACGTCCGCGA
GAAGAGGCATCGGTAA
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