mRNA_H-elongata_contig119243.1483.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI) HSP 1 Score: 121 bits (304), Expect = 2.380e-30 Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTS--IFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
F +KD+GEASY +G +I+RDR+ G L Q YI + ERF + K S I P G K S + P ++E ++M QIP IVG+LM+A T TRP ISFA L ++ NPG HW+AA+K L+YL T+D +TY
Sbjct: 185 FEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.250e-30 Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGL--TKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYGG 411
F +K+LGEA + LG +I DR GTL Q +Y+ + RF K + P G K LSK+ SP TD E E+MR P + ++G+L++ T TRPD+++ QL++F +NPG HW+AA + L+YL T+D GI Y G
Sbjct: 130 FKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMK-LSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSG 267
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE) HSP 1 Score: 120 bits (301), Expect = 4.310e-29 Identity = 65/138 (47.10%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLT--KTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
F ++DLG SY LG +ITR+R L Q QYI E FG+T K + P LSKS SP T EVEEM +IP VG+L++ TMTRPDI++ A LA+FN NPG HW+A + L+YL T D+ + YG
Sbjct: 308 FKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCKPATTPMTPN-LILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEYG 444
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A6H5J9U3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U3_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.250e-28 Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 4 PIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
P K+LGE ++LGC RDR AGT+ Q YI+++ ERF + +TS P A +++S +E EE +P RE+VG LMW + TRPDIS A +A+ ++ P +HW+AAQK L YL T L + +
Sbjct: 11 PTKNLGEVKFFLGCAYRRDREAGTIEISQESYIRSVLERFNVVRTSSIP--ASPTVVNRSV-----MENEEAGDVPFREVVGCLMWIASQTRPDISNAVRAVARHSNEPKLSHWKAAQKILNYLLGTAHLSLNF 137
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A401GID0_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GID0_9APHY) HSP 1 Score: 114 bits (285), Expect = 7.350e-28 Identity = 62/137 (45.26%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKT-SIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
F ++DLG + LG I RDR T++ Q QYI M E +GL+ S+ + G LSK+ +P T E E MR++P VGALM+ TRPDI FA LA+FN NPGPTHW A + YL T DL + YG
Sbjct: 52 FKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLECYGLSDCKSVSTPMDPGAELSKALAPQTQEETEYMRKVPYLSAVGALMYLAITTRPDIMFAISCLARFNANPGPTHWIAVKHVFCYLKGTMDLRLHYG 188
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN) HSP 1 Score: 117 bits (292), Expect = 9.630e-28 Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLT--KTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
F +KDLG+ASY +G +I RDR+ G L Q YI + R+ + K S+ P V G P T+VE E+M QIP +VG+LM+A TRPDI++ A L ++ NPG HW+AA+K L+YL T+D +TY
Sbjct: 1016 FDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAPVVKGDV-FGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDYKLTY 1151
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI) HSP 1 Score: 116 bits (291), Expect = 1.330e-27 Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGL-TKTSIFPFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITYG 408
F + DLG + LG ++ RDR A T+ Q YI T+A RF L T + + G L++S SP T +V +M +P RE VG+LM+AV TRPDI+FA L++F NPG HW A ++ ++YL TR+L + YG
Sbjct: 1184 FEMSDLGAMRWILGIEVQRDRQARTIAISQRTYIDTVAARFNLETANPVSTPLQPGGVLTRSQSPSTPHQVADMSNVPYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGRAHWEAVKRVIRYLVGTRELWLVYG 1320
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN) HSP 1 Score: 115 bits (289), Expect = 2.460e-27 Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPF-VAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
F +K+LGEA + LG +I DR GTL Q +YI + ERF + + A LSK SP T+ E EM P R ++G LM+ T TRPDI++ QLA+F ++PG HW+AA + LQYL TR GI Y
Sbjct: 1046 FKMKELGEAKFILGMEIDHDRECGTLMIKQTRYIDDIVERFNQRNAKMVEYPCAANLKLSKMMSPTTEKERAEMWSRPYRSLIGCLMYITTCTRPDIAYVVTQLARFLEDPGTQHWKAAIRVLQYLKSTRHHGIVY 1181
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL) HSP 1 Score: 111 bits (278), Expect = 5.290e-27 Identity = 55/127 (43.31%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIF--PFVAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 375
F +KDLG+A Y LG QI+R++ G L+ DQ +YI+ + +RF LT PF + + L KS +P + E+EEM+++P +E VG L + TRPDISFA + +++F+ NPG HW A ++ L+YL
Sbjct: 32 FRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSER-LDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYL 157
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Match: A0A151T328_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T328_CAJCA) HSP 1 Score: 112 bits (279), Expect = 1.160e-26 Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGCQITRDRNAGTLTFDQHQYIQTMAERFGLTKTSIFPF-VAGGKSLSKSDSP*TDVEVEEMRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWCTRDLGITY 405
F +KD+GEASY +G +I RDR+ G L Q YI + ERF + K S P + G S + P D+E ++M I VG++++ TRPDISFAA L ++ NPG HW+AA+K L+YL T+ +TY
Sbjct: 100 FEMKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDKFSLTQCPKNDLERKQMEVISYASFVGSIIYTQICTRPDISFAARMLGRYQSNPGMEHWKAAKKVLRYLQGTKCHMLTY 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119243.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119243.1483.1 >prot_H-elongata_contig119243.1483.1 ID=prot_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp MRQIPNREIVGALMWAVTMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALback to top mRNA from alignment at H-elongata_contig119243:24..434- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119243.1483.1 ID=mRNA_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig119243:24..434- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119243:24..434- >mRNA_H-elongata_contig119243.1483.1 ID=mRNA_H-elongata_contig119243.1483.1|Name=mRNA_H-elongata_contig119243.1483.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig119243:24..434- (Himanthalia elongata Himel1 dioecious)back to top |