mRNA_H-elongata_contig71524.14817.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.120e-61 Identity = 99/176 (56.25%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 4 LIKRIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
L+ R RRP+ TY+KPML+D T RFRMEY DF VLVD LR L+++ K G L+NGAIPV+YQ+A+T LRWLAGGSIYE MD H+ ARSTAY + VI+A+NAC +L+CKWP+ +D+ + + + V+ C+GAMDGLF+ +PS ++ A+PN YY+GHK+GFGMNFQ
Sbjct: 49 LVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMT-LRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 222
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 196 bits (497), Expect = 5.370e-58 Identity = 94/177 (53.11%), Postives = 131/177 (74.01%), Query Frame = 1
Query: 1 KLIKRIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
K ++R RR W TY KPM++D T + RFRM+Y +F +L D+LR +L+R+ +MG L+NG IPV++Q+A+ +LR+LAGGS++E MD ++ ARSTAY I +RVI AIN +LDC WP+ D + + +R RS++GVI C+GAMDGLF+ +PS R P S+YSGHK+GFGMNFQ
Sbjct: 44 KFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAM-ALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.400e-56 Identity = 97/173 (56.07%), Postives = 126/173 (72.83%), Query Frame = 1
Query: 13 RIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
R RR + TYV+PM+ED T + RFRM+Y DF L D+LR +L+RD KMG L+NGAIPV++Q+A+T LR+LAGGS++E MD ++ A+STAY I +RVI AIN L+CKWP DD A +R RS++GVI C+GAMDGLF+ P + A P S+YSGHK+ FGMNFQ
Sbjct: 52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMT-LRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYG-DDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.620e-53 Identity = 90/170 (52.94%), Postives = 119/170 (70.00%), Query Frame = 1
Query: 4 LIKRIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRG 513
L+ R RRP+ T++KP+L+D T RFRMEY DF VL+D LR L ++ KMG L+ GAIPV+YQIA+T LRWLAGGSIYE MD H+ ARSTAY + VI+A+NAC +L+CKWP+ DV + C+GAMDGLF+ +PS ++ A+PN YY+GH++G
Sbjct: 49 LVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMT-LRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMDV---------------VRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 172 bits (436), Expect = 6.320e-49 Identity = 83/142 (58.45%), Postives = 110/142 (77.46%), Query Frame = 1
Query: 106 VLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
VLVD LR L+++ +MG L+NGAIPV+ Q+A+T LRWLAGGSIYE MD H+ ARSTAY + VI+A+NAC +L+CKWP+ +D +AA FR+RSS V+ C+GA DGLF+ +PS ++ A+PN YY+GHK+GFGMNFQ
Sbjct: 72 VLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMT-LRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 211
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.600e-47 Identity = 76/127 (59.84%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 151 MGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
MG L+NGAIPV+ Q+A+T LRWLAGGSIYE MD H+ ARSTAY + VI+A+NAC +L+CKWP+ +D +AA FR+RSS V+ C+GAMD LF+ +PS ++ A+PN YY+GHK+GFGMNFQ
Sbjct: 1 MGLLRNGAIPVEDQVAMT-LRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 126 bits (316), Expect = 6.870e-32 Identity = 72/147 (48.98%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 4 LIKRIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKMGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFI 444
L+ R+RRP+ TY+KPML+D T RFRMEY DF VLVD LR L+++ KMG L+NGAIPV+YQ+A+T LRWLAGGS YE MD H+ ARSTAY HA+ W N T F + SG + G +G F+
Sbjct: 49 LVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMT-LRWLAGGSTYECMDGHVIARSTAY-------HAVCDAQYRIMAWMMNCPGSQNDRTAF---NFSGFDKLLAGLPEGHFV 184
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 108 bits (270), Expect = 3.580e-27 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 151 MGGLKNGAIPVQYQIALTSLRWLAGGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRD 471
MG L+NGAIPV+YQ+A+T LRWLAGGSIYE MD H+ ARSTAY + VI+A+NAC +L+CKWP+ +D AA FR+RSS G G+ G +C + R+
Sbjct: 1 MGLLRNGAIPVEYQVAMT-LRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAAGAAELFRNRSSYGCRPEVRGSH-GWLVCPDDQAERE 104
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 113 bits (283), Expect = 5.800e-27 Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 223 GGSIYEGMDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
GGSI+E MD + A+STAY I YRVI AIN + DC WP+ DD +R RS++ VI C+GAMDGLF+ PS R P +YSGHK+GFGMNFQ
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEG-DDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQ 152
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.510e-24 Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 244 MDRHITARSTAYEIAYRVIHAINACSDLDCKWPDNLDDVTKAATGFRDRSSSGVIETCIGAMDGLFICTKRPSRRDTAKPNSYYSGHKRGFGMNFQ 531
MD H+ ARSTAY VI+A+NACS+++CKWP+ +D +AA FR+RSS V+ C+GAMDG F+ +PS ++ +PN +GHK+GFG NFQ
Sbjct: 1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEG-EDAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQ 95 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71524.14817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71524.14817.1 >prot_H-elongata_contig71524.14817.1 ID=prot_H-elongata_contig71524.14817.1|Name=mRNA_H-elongata_contig71524.14817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp KLIKRIRRPWATYVKPMLEDKTVKGRFRMEYHDFNVLVDLLRTELKRDAKback to top mRNA from alignment at H-elongata_contig71524:1017..1547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71524.14817.1 ID=mRNA_H-elongata_contig71524.14817.1|Name=mRNA_H-elongata_contig71524.14817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig71524:1017..1547+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71524:1017..1547+ >mRNA_H-elongata_contig71524.14817.1 ID=mRNA_H-elongata_contig71524.14817.1|Name=mRNA_H-elongata_contig71524.14817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig71524:1017..1547+ (Himanthalia elongata Himel1 dioecious)back to top |