prot_H-elongata_contig7142.14802.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7142.14802.1
Unique Nameprot_H-elongata_contig7142.14802.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 7.520e-116
Identity = 167/201 (83.08%), Postives = 184/201 (91.54%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 201
            VH RQEKNS+LRHLRNV FEITPGLVADFVL PKTCAVFISLRYHLLYPHYLIQRIKELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKV+RIHEALHEPL R H   R+
Sbjct:   83 VHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVRKHSSSRL 283          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 2.830e-77
Identity = 118/155 (76.13%), Postives = 136/155 (87.74%), Query Frame = 0
Query:   48 YPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRIR 202
            +PH  +Q   ELS HFTLR+LLCHVD++DSE PLLEINK AV NDFT +LAWSLQEAARYLETYKAYE KSA+SIQEKV+DD+L KLQDCFGV+RSVNKSDVLTLASNFGS +A+CDA+A +L+LCPGLG+KKVARIHEALHEPL R H   R++
Sbjct:    5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLK 156          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.550e-65
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 0
Query:   14 LRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPL 192
            +RNV +E   G++ DFV+SP  CA+F+S+RYH L P Y+ QRI+EL   F LR+LL  VD +D+   LLE+NK AV  +FT +LAWS  EAARYLET+KA+E K   SIQEKVN DYLAK QD    + +VN++DV+TL S FGS Q +C+AS E++ALCPGLGDKKV  +H+ALH+P 
Sbjct:    7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQPF 185          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: M4FED2_BRARP (Uncharacterized protein n=5 Tax=Brassicaceae TaxID=3700 RepID=M4FED2_BRARP)

HSP 1 Score: 210 bits (535), Expect = 2.090e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 195
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  123 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 316          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1J3ENY5_NOCCA (DNA excision repair protein ERCC-1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENY5_NOCCA)

HSP 1 Score: 207 bits (527), Expect = 2.260e-63
Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 195
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWS+ E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV  +++  HEP  RA
Sbjct:   25 VSNRQKGNPLLKHIRNVKW-VFSDIIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNQSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKWLYDTFHEPFKRA 218          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A6J0NQ48_RAPSA (DNA excision repair protein ERCC-1 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NQ48_RAPSA)

HSP 1 Score: 210 bits (535), Expect = 3.000e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 195
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  128 VSNRQKGNPLLKHIRNVKW-VYSDIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQRNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 321          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A078GQT9_BRANA ((rape) hypothetical protein n=6 Tax=Brassicaceae TaxID=3700 RepID=A0A078GQT9_BRANA)

HSP 1 Score: 210 bits (534), Expect = 3.190e-63
Identity = 105/195 (53.85%), Postives = 142/195 (72.82%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 195
            V +RQ+ N +L+H+RNV + +   ++ D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+EDS KPLLE+ KTA+L+D T + AWSL E ARYLET K YE K A+ IQ +++ DYL++L      IR VNKSDV+TL S FGS   I DAS E LA CPG+G++KV R+++  HEP  RA
Sbjct:  124 VSNRQKGNPLLKHIRNVKW-VFSEIIPDYLLGQTTCALYLSLRYHLLHPDYLYFRIRELQKNFKLRVVLCHVDVEDSVKPLLEVTKTALLHDCTLLCAWSLTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 317          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 206 bits (525), Expect = 4.260e-63
Identity = 101/201 (50.25%), Postives = 143/201 (71.14%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKRI 201
            V  RQ+ N +L+H+RNV +     +V D++L   +CA++ISLRYHLL+P Y+  RI+EL  +F LR++LCH+D+ED  KPLLE+ +TA+L+D + +  WSL+E  RYLET K YE KSA+SI+E+++ DYL++L      IR VNK+DV+TL S FGS   I DAS E+LA CPG+G++KV R+++  HEP  R   Q  I
Sbjct:   18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPFRRTSSQSTI 217          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A835LMH1_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMH1_9MAGN)

HSP 1 Score: 208 bits (530), Expect = 8.780e-63
Identity = 100/195 (51.28%), Postives = 141/195 (72.31%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRA 195
            V  RQ+ N +L+H+RNV + +   ++ D++L   +CA+++SLRYHLL+P YL  RIKEL  +F LR++LCHVD+ED  KP+LE+ KTA+L+D T + AWSL+E  RYLET K YE K A+ +Q +++ DYL++L      +R VNK+DV+TL SNFGS   I D+S E LA CPG+G+KKV R+++  HEP  RA
Sbjct:  103 VSHRQKGNPLLKHIRNVKW-LFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRIKELQKNFKLRVVLCHVDVEDVVKPILEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSNFGSLSRIMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRRA 296          
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Match: A0A7J8YLC7_GOSAI (Uncharacterized protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A7J8YLC7_GOSAI)

HSP 1 Score: 206 bits (525), Expect = 9.850e-63
Identity = 100/194 (51.55%), Postives = 137/194 (70.62%), Query Frame = 0
Query:    1 VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPHYLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWSLQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVLTLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSR 194
            V  RQ+ N +L+H+RNV +     +  D++L   TCA+++SLRYHLL+P YL  RI+EL  +F LR++LCHVD+ED  KPLLE+ KTA+L+D T +  WSL+E  RYLET K YE K A+ IQ +++ DYL++L      +R VNK+DV+TL S FGS  +I DAS E LA CPG+G++KV R+H+  HEP  R
Sbjct:   40 VSHRQKGNPLLKHIRNVRWAFA-DVACDYLLGQNTCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTVRRVNKTDVVTLGSTFGSLSSIMDASMEDLARCPGIGERKVKRLHDTFHEPFKR 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7142.14802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE7.520e-11683.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI2.830e-7776.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX2_9STRA2.550e-6557.54Restriction endonuclease type II-like protein n=1 ... [more]
M4FED2_BRARP2.090e-6353.85Uncharacterized protein n=5 Tax=Brassicaceae TaxID... [more]
A0A1J3ENY5_NOCCA2.260e-6352.82DNA excision repair protein ERCC-1 (Fragment) n=1 ... [more]
A0A6J0NQ48_RAPSA3.000e-6353.85DNA excision repair protein ERCC-1 n=1 Tax=Raphanu... [more]
A0A078GQT9_BRANA3.190e-6353.85(rape) hypothetical protein n=6 Tax=Brassicaceae T... [more]
A0A1D1ZHX7_9ARAE4.260e-6350.25DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
A0A835LMH1_9MAGN8.780e-6351.28Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A7J8YLC7_GOSAI9.850e-6351.55Uncharacterized protein n=6 Tax=Malvoideae TaxID=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10130coord: 1..113
e-value: 1.1E-40
score: 139.9
NoneNo IPR availablePFAMPF14520HHH_5coord: 143..189
e-value: 7.0E-8
score: 33.0
NoneNo IPR availableGENE3D1.10.150.20coord: 114..203
e-value: 7.1E-28
score: 98.0
NoneNo IPR availablePRODOMPD013585coord: 1..122
e-value: 5.0E-31
score: 334.0
IPR004579ERCC1/RAD10/SWI10 familyTIGRFAMTIGR00597TIGR00597coord: 1..109
e-value: 1.5E-34
score: 116.2
IPR004579ERCC1/RAD10/SWI10 familyPFAMPF03834Rad10coord: 1..112
e-value: 3.0E-38
score: 130.3
IPR004579ERCC1/RAD10/SWI10 familyPANTHERPTHR12749EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1coord: 1..200
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 86..198
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 1..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7142contigH-elongata_contig7142:2412..3546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7142.14802.1mRNA_H-elongata_contig7142.14802.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7142 2412..3546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7142.14802.1 ID=prot_H-elongata_contig7142.14802.1|Name=mRNA_H-elongata_contig7142.14802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
VHSRQEKNSVLRHLRNVPFEITPGLVADFVLSPKTCAVFISLRYHLLYPH
YLIQRIKELSMHFTLRILLCHVDIEDSEKPLLEINKTAVLNDFTCILAWS
LQEAARYLETYKAYEQKSAESIQEKVNDDYLAKLQDCFGVIRSVNKSDVL
TLASNFGSFQAICDASAEKLALCPGLGDKKVARIHEALHEPLSRAHRQKR
IRQET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004579ERCC1/RAD10/SWI10
IPR010994RuvA_2-like
IPR011335Restrct_endonuc-II-like