prot_H-elongata_contig7138.14799.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7138.14799.1
Unique Nameprot_H-elongata_contig7138.14799.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
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BLAST of mRNA_H-elongata_contig7138.14799.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.940e-50
Identity = 99/190 (52.11%), Postives = 117/190 (61.58%), Query Frame = 0 
Query:    6 GGSKLFKGFQTTETVVRRKKPRTLSTETATPAPEXXXXXXXXXXXXPSRYPKDVWPGHKPPSQKDEGSSNRVVPHVEGGDAK--GAVVTGSELLEFFCDGCDDTIPDGIERMECVVCPDEFCLCQACYDEGELFEKKHEHELLPSSAPFHITSAAPNAEAAAAAAKSLHVTEAKKDEGDLDGGYDDDDLG 193
            G S+LFKGF+ TETVVR                 XX            RYPKD+WPGHKPP+            H+ GG+    G      E LEFFCDGCD+TIP G+ERMEC VCPDEFCLC ACYDEGE+ +K+H+HELLPS+APFH+T AAP+A AA  AAK+LHV EA   +G     YD+ DLG
Sbjct:  159 GASRLFKGFEKTETVVRXXXXXXXXXXXXX---XXXIPPSGEGEHVTHRYPKDIWPGHKPPN------------HIVGGEGANDGERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEVLDKRHKHELLPSAAPFHVTRAAPSAAAALEAAKALHVAEAHHGQGLA---YDEADLG 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7138.14799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI3.940e-5052.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.90coord: 93..148
e-value: 1.2E-7
score: 33.5
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 97..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7138contigH-elongata_contig7138:6678..8837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7138.14799.1mRNA_H-elongata_contig7138.14799.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7138 6678..9965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7138.14799.1 ID=prot_H-elongata_contig7138.14799.1|Name=mRNA_H-elongata_contig7138.14799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
GRVGAGGSKLFKGFQTTETVVRRKKPRTLSTETATPAPETEALDTSAQAP
APSRYPKDVWPGHKPPSQKDEGSSNRVVPHVEGGDAKGAVVTGSELLEFF
CDGCDDTIPDGIERMECVVCPDEFCLCQACYDEGELFEKKHEHELLPSSA
PFHITSAAPNAEAAAAAAKSLHVTEAKKDEGDLDGGYDDDDLG*
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