mRNA_H-elongata_contig71364.14798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71364.14798.1
Unique NamemRNA_H-elongata_contig71364.14798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71364.14798.1 vs. uniprot
Match: A0A6H5L0F8_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.470e-59
Identity = 110/177 (62.15%), Postives = 135/177 (76.27%), Query Frame = 2 
Query:  215 MSSVKTAMLVAFMFALAAAQDRTSQEALKDLPLPWVIATLHFGAGMLWIFPAWTIGLRQTPSLNDLQRSKIAPLAFLHAAGHLCDLGVFGAGSMAVTHVFQAGEPLVVCLASWLAVEQA-QDLVAWFALVPLVAGVVITFREVVT-GSLVSHAVAACAVLVGGTRTALSQQVKLRDA 739
            MSS K A  VA MFAL AA DRTSQ AL++ PLPW++ATLHFGAG+LWIFPAWTIG+RQTP L+D Q+ ++APLAFLHAAGHLC   V GAGS+AVT VFQA EP+VV + S +      Q LVAW ALV   AGV++TF+E +T GS+V+++VAA A L+   RTALS QV + +A
Sbjct:    1 MSSAKAAAFVALMFALGAALDRTSQSALEEFPLPWMVATLHFGAGLLWIFPAWTIGMRQTPRLSDTQKKRVAPLAFLHAAGHLC---VLGAGSLAVTQVFQAAEPVVVSVMSLVVGSGGKQHLVAWLALVLATAGVLMTFQEGITAGSVVTNSVAAFAALLSSARTALSDQVMVEEA 174
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BLAST of mRNA_H-elongata_contig71364.14798.1 vs. uniprot
Match: D8LMY5_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY5_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.320e-59
Identity = 110/177 (62.15%), Postives = 134/177 (75.71%), Query Frame = 2 
Query:  215 MSSVKTAMLVAFMFALAAAQDRTSQEALKDLPLPWVIATLHFGAGMLWIFPAWTIGLRQTPSLNDLQRSKIAPLAFLHAAGHLCDLGVFGAGSMAVTHVFQAGEPLVVCLASWLAVEQA-QDLVAWFALVPLVAGVVITFREVVT-GSLVSHAVAACAVLVGGTRTALSQQVKLRDA 739
            MSS K A  VA MFAL  A DRTSQ AL++ PLPW++ATLHFGAG+LWIFPAWTIG+RQTP L+D Q+ ++APLAFLHAAGHLC   V GAGS+AVT VFQA EP+VV + S +      Q LVAW ALV   AGV++TFRE +T GS+V+++VAA A L+   RTALS QV + +A
Sbjct:    1 MSSAKAAAFVALMFALGVALDRTSQSALEEFPLPWMVATLHFGAGLLWIFPAWTIGMRQTPRLSDTQKKRVAPLAFLHAAGHLC---VLGAGSLAVTQVFQAAEPVVVSVMSLVVGSGGKQHLVAWLALVLATAGVLMTFREGITAGSVVTNSVAAFAALLSSARTALSDQVMVEEA 174
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BLAST of mRNA_H-elongata_contig71364.14798.1 vs. uniprot
Match: A0A7S0DYK3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DYK3_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-10
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 2 
Query:  218 SSVKTAMLVAFMFALAAAQDRTSQEALKDLPLPWVIATLHFGAGMLWIFPAWTIGLRQTPSLNDLQRSKIAPLAFLHAAGHLCDLGVFGAGSMAVTHVFQAGEPL 532
            S++K        + L    + ++   LK L LPW +A L  G G+L++ P W  GL + P L+      IAP+A +H AG    +   GAGS+A  +V ++ EPL
Sbjct:    6 SNLKIVCFFLLWYVLNVMYNESNMTVLKVLGLPWSLAALQLGLGLLYVVPKWATGLGKVPRLSQANLKAIAPIAMIHGAGQCVTVLACGAGSLAFVNVVKSLEPL 110
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BLAST of mRNA_H-elongata_contig71364.14798.1 vs. uniprot
Match: A0A6T8ALR7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8ALR7_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 2.500e-10
Identity = 36/109 (33.03%), Postives = 57/109 (52.29%), Query Frame = 2 
Query:  203 SQSTMSSVKTAMLVAFMFALAAAQDRTSQEALKDLPLPWVIATLHFGAGMLWIFPAWTIGLRQTPSLNDLQRSKIAPLAFLHAAGHLCDLGVFGAGSMAVTHVFQAGEP 529
            +++  SSVK        + +    +  ++  LK L LPW +A L  G G+L++ P W  GL++ PSL       IAP+A +H  G    +   GAGS+A  +V ++ EP
Sbjct:    2 AEAETSSVKILFFFLIWYVINVVYNDMNKTVLKVLDLPWTMACLQLGLGLLYVGPLWLTGLKKAPSLTTSNVMTIAPIALIHGLGQCVTVLSLGAGSLAFVNVVKSLEP 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71364.14798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L0F8_9PHAE1.470e-5962.15TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMY5_ECTSI2.320e-5962.15TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0DYK3_9EUKA1.380e-1034.29Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A6T8ALR7_9EUKA2.500e-1033.03Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71364contigH-elongata_contig71364:1026..3186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.8e-49
Seed eggNOG ortholog2880.D8LMY5
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-02_004130.1
Exons4
Model size910
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71364.14798.1prot_H-elongata_contig71364.14798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71364 1240..3120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.0226467-UTR-H-elongata_contig71364:1025..12391622931114.0226467-UTR-H-elongata_contig71364:1025..1239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71364 1026..1239 +
1691679703.8334265-UTR-H-elongata_contig71364:1025..12391691679703.8334265-UTR-H-elongata_contig71364:1025..1239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71364 1026..1239 +
1622931114.1216464-UTR-H-elongata_contig71364:3120..31861622931114.1216464-UTR-H-elongata_contig71364:3120..3186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71364 3121..3186 +
1691679703.9010177-UTR-H-elongata_contig71364:3120..31861691679703.9010177-UTR-H-elongata_contig71364:3120..3186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71364 3121..3186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.046577-CDS-H-elongata_contig71364:1239..13981622931114.046577-CDS-H-elongata_contig71364:1239..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 1240..1398 +
1691679703.8434985-CDS-H-elongata_contig71364:1239..13981691679703.8434985-CDS-H-elongata_contig71364:1239..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 1240..1398 +
1622931114.0693364-CDS-H-elongata_contig71364:2035..21791622931114.0693364-CDS-H-elongata_contig71364:2035..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2036..2179 +
1691679703.8569043-CDS-H-elongata_contig71364:2035..21791691679703.8569043-CDS-H-elongata_contig71364:2035..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2036..2179 +
1622931114.0926173-CDS-H-elongata_contig71364:2452..25721622931114.0926173-CDS-H-elongata_contig71364:2452..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2453..2572 +
1691679703.8730469-CDS-H-elongata_contig71364:2452..25721691679703.8730469-CDS-H-elongata_contig71364:2452..2572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2453..2572 +
1622931114.1078894-CDS-H-elongata_contig71364:2913..31201622931114.1078894-CDS-H-elongata_contig71364:2913..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2914..3120 +
1691679703.8883672-CDS-H-elongata_contig71364:2913..31201691679703.8883672-CDS-H-elongata_contig71364:2913..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71364 2914..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71364.14798.1

>prot_H-elongata_contig71364.14798.1 ID=prot_H-elongata_contig71364.14798.1|Name=mRNA_H-elongata_contig71364.14798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
MSSVKTAMLVAFMFALAAAQDRTSQEALKDLPLPWVIATLHFGAGMLWIF
PAWTIGLRQTPSLNDLQRSKIAPLAFLHAAGHLCDLGVFGAGSMAVTHVF
QAGEPLVVCLASWLAVEQAQDLVAWFALVPLVAGVVITFREVVTGSLVSH
AVAACAVLVGGTRTALSQQVKLRDARWVDTVLFLTRWLDGSERNEENGEV
PNKKKVRLR*
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mRNA from alignment at H-elongata_contig71364:1026..3186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71364.14798.1 ID=mRNA_H-elongata_contig71364.14798.1|Name=mRNA_H-elongata_contig71364.14798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2161bp|location=Sequence derived from alignment at H-elongata_contig71364:1026..3186+ (Himanthalia elongata Himel1 dioecious)
GTCTCGTTTTCTTCGTAGCTTGCTGCCGCAAACATCCGCGCAACGGTGGC
CTCATACGCCCGTGGAACAGCAGCAACGCTTGCTTGCTGCGGCCACCATC
TCGATCGGGGTCGGTCAACGAACGCGACGAGAGAGTCCGGTCTGGTGTCC
TCTTGTGGTTAACGAGTGTGGAACTTTCCGAGTATTTGTGGTATTTATTT
CGAGCCAGTCAACAATGAGCTCGGTGAAGACGGCCATGTTGGTGGCCTTT
ATGTTTGCCCTCGCGGCAGCTCAGGATCGCACCAGCCAGGAAGCTCTCAA
GGATCTACCGCTGCCTTGGGTCATCGCCACGCTGCACTTCGGGGCAGGGA
TGCTTTGGATTTTCCCTGCGTGGGTGAGAGAGCGGCTCAAGTCTTTGTGT
GCGTGGTGCTGTATTTCCCCGCCCTTTTTTTTACAGAGGGTGGGCGGAGT
TGTGCGGTGTTGTAAAAGCTTGTATATAACTCAGCCCCCAGCGATTTAAT
ATTAGCCGTGTATGTAGATATGCATGTTTGTAAACGTAAATTGTTTCGAG
GAGAACCACCGCGGAGACCGTTTCATAGACCGCGCGTGCGCTCCGTGACC
TCTCTTCGATGTAAAGACCATATGCCGTAAGACATCATACCAGACCGTAT
GAACTGAGTTGCTATAATTCTGGCCGTTACTAAACATCAGCAGTAGCTAA
TGAACATCTGCGTCGATAAAAATGTAGCCGTTCTGACTTGGGCGCTGTGC
AGCACGTTTATTTTGCGAAAAGAAAATATAATTAGAGTGCGGCATGGTCG
GAAGAGTGCAATCGATACCGACACGACGACAGAGCAGAGCTAGGGACAGC
GCAGCCAGTAGTGGTGTTTCGCAGCTACAGTGGTATCCAGAAAAAAGCCA
AGCATGCGTGCGTGCTTTGAACAGGACACGCTCTTCACCGGCGGTTCCGA
GGTCTTGTATTGTCTTGTCCTATCCCTTTGTCTCTTATGTTTCTCTGTCG
CCGTCCTCAGACGATCGGGTTGCGCCAGACGCCAAGCCTGAACGACCTCC
AGAGGTCCAAGATTGCGCCGCTTGCGTTCCTCCATGCGGCCGGACACTTG
TGCGATCTCGGCGTGTTCGGAGCGGGATCGATGGCCGTGACGCATGTCTT
CCAGGTTTGATTTGCTCGAGGGTGATTTTCAGACCTCGACTCGATGAGGC
TTTGCCGGGATGATGCCGGAACTCTCGGCGGAACCCACACGATGCAGAAA
TGGTGGGGAGTTCGCATTGGGGGGGCGAAGAGTTCTTAGCACCACGGTGT
CTATCGAGTGCTGGTCTATCAGTTGCCTCGTCTTTCCCGCGACGCAATTT
TGGTAGCAGCGCTTTGCTTCAGCCCCTCGCCGCTACCCTACCCATCTGCC
GTTTTCCGATCTCTTCGTTCCAAGCAGGCAGGGGAACCACTAGTCGTGTG
CTTGGCTTCGTGGCTGGCCGTGGAACAAGCCCAGGATTTGGTAGCGTGGT
TCGCCCTCGTGCCGCTTGTCGCAGGAGTCGTCATCACGTTTCGAGAGGTG
GGTGAATGAGCTGACAAGCCCGTGTTGCTGCTTTTTATATGAAGGCGTTT
TCCGTACTCTTCCCACCCCCGCCCCGCTCACCTACCTGCTTACCCTCCAG
ATGTTTTTTACGTACCGGTGTTTCGCGCACAAAGAAAAAGACATGGTGAG
GATTTTCCGTCGGATCGAATGGCTCAGGGTCTGCCGCAGGCTCCGCCGCA
TGACACAGCCGTGAGCAGACTCGACGTACGTCCGCGAGCGATAGAAGTTT
ACGATTGTCACCGTATGTGATTATTTTGTTGTGTGATGCGGCGTTTGTTG
TGCACTGCTGTGACGTCGCGCTCCTTCTTCGACGGAAGGTTGTCACGGGG
TCTCTGGTGTCACATGCCGTGGCGGCGTGCGCCGTGCTAGTGGGCGGGAC
TCGGACGGCCTTATCCCAGCAGGTGAAGCTCCGTGATGCTCGATGGGTCG
ATACGGTTTTGTTCCTCACTCGATGGCTCGATGGGTCGGAAAGAAATGAA
GAGAACGGAGAGGTTCCCAATAAAAAAAAAGTGCGTCTTAGGTAAAACAT
GGAATGCTTACATGTTCTACTAGCTTGCTTCTTCTGCTCGTGGAGGGGTG
GGCGTGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig71364:1026..3186+

>mRNA_H-elongata_contig71364.14798.1 ID=mRNA_H-elongata_contig71364.14798.1|Name=mRNA_H-elongata_contig71364.14798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig71364:1026..3186+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTCGGTGAAGACGGCCATGTTGGTGGCCTTTATGTTTGCCCTCGC
GGCAGCTCAGGATCGCACCAGCCAGGAAGCTCTCAAGGATCTACCGCTGC
CTTGGGTCATCGCCACGCTGCACTTCGGGGCAGGGATGCTTTGGATTTTC
CCTGCGTGGATGAGCTCGGTGAAGACGGCCATGTTGGTGGCCTTTATGTT
TGCCCTCGCGGCAGCTCAGGATCGCACCAGCCAGGAAGCTCTCAAGGATC
TACCGCTGCCTTGGGTCATCGCCACGCTGCACTTCGGGGCAGGGATGCTT
TGGATTTTCCCTGCGTGGACGATCGGGTTGCGCCAGACGCCAAGCCTGAA
CGACCTCCAGAGGTCCAAGATTGCGCCGCTTGCGTTCCTCCATGCGGCCG
GACACTTGTGCGATCTCGGCGTGTTCGGAGCGGGATCGATGGCCGTGACG
CATGTCTTCCAGACGATCGGGTTGCGCCAGACGCCAAGCCTGAACGACCT
CCAGAGGTCCAAGATTGCGCCGCTTGCGTTCCTCCATGCGGCCGGACACT
TGTGCGATCTCGGCGTGTTCGGAGCGGGATCGATGGCCGTGACGCATGTC
TTCCAGGCAGGGGAACCACTAGTCGTGTGCTTGGCTTCGTGGCTGGCCGT
GGAACAAGCCCAGGATTTGGTAGCGTGGTTCGCCCTCGTGCCGCTTGTCG
CAGGAGTCGTCATCACGTTTCGAGAGGCAGGGGAACCACTAGTCGTGTGC
TTGGCTTCGTGGCTGGCCGTGGAACAAGCCCAGGATTTGGTAGCGTGGTT
CGCCCTCGTGCCGCTTGTCGCAGGAGTCGTCATCACGTTTCGAGAGGTTG
TCACGGGGTCTCTGGTGTCACATGCCGTGGCGGCGTGCGCCGTGCTAGTG
GGCGGGACTCGGACGGCCTTATCCCAGCAGGTGAAGCTCCGTGATGCTCG
ATGGGTCGATACGGTTTTGTTCCTCACTCGATGGCTCGATGGGTCGGAAA
GAAATGAAGAGAACGGAGAGGTTCCCAATAAAAAAAAAGTGCGTCTTAGG
TAAGTTGTCACGGGGTCTCTGGTGTCACATGCCGTGGCGGCGTGCGCCGT
GCTAGTGGGCGGGACTCGGACGGCCTTATCCCAGCAGGTGAAGCTCCGTG
ATGCTCGATGGGTCGATACGGTTTTGTTCCTCACTCGATGGCTCGATGGG
TCGGAAAGAAATGAAGAGAACGGAGAGGTTCCCAATAAAAAAAAAGTGCG
TCTTAGGTAA
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