mRNA_H-elongata_contig71315.14793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71315.14793.1
Unique NamemRNA_H-elongata_contig71315.14793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71315.14793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71315contigH-elongata_contig71315:359..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71315.14793.1prot_H-elongata_contig71315.14793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71315 378..707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.2498531-UTR-H-elongata_contig71315:358..3771622931113.2498531-UTR-H-elongata_contig71315:358..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71315 359..377 +
1691679703.4819832-UTR-H-elongata_contig71315:358..3771691679703.4819832-UTR-H-elongata_contig71315:358..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71315 359..377 +
1622931113.2753866-UTR-H-elongata_contig71315:707..9311622931113.2753866-UTR-H-elongata_contig71315:707..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71315 708..931 +
1691679703.5069125-UTR-H-elongata_contig71315:707..9311691679703.5069125-UTR-H-elongata_contig71315:707..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71315 708..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.2616217-CDS-H-elongata_contig71315:377..7071622931113.2616217-CDS-H-elongata_contig71315:377..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71315 378..707 +
1691679703.4920862-CDS-H-elongata_contig71315:377..7071691679703.4920862-CDS-H-elongata_contig71315:377..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71315 378..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71315.14793.1

>prot_H-elongata_contig71315.14793.1 ID=prot_H-elongata_contig71315.14793.1|Name=mRNA_H-elongata_contig71315.14793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MGILYRKFKVTSKYAFWGFEEEENTIPPFLMVISNSIINGNRTNVTIVQK
AKNYIHTQRRGKESVHGACIAHHSLCLLQAHCCIGENKMFLRPICNEFIS
VPYNLLSTT*
back to top

mRNA from alignment at H-elongata_contig71315:359..931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71315.14793.1 ID=mRNA_H-elongata_contig71315.14793.1|Name=mRNA_H-elongata_contig71315.14793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig71315:359..931+ (Himanthalia elongata Himel1 dioecious)
ATACCACTTTATCGGTGACATGGGAATACTCTACCGAAAATTCAAAGTAA
CTTCAAAGTACGCTTTTTGGGGTTTCGAGGAGGAGGAAAATACGATTCCA
CCCTTTCTGATGGTAATTTCTAACTCAATTATTAATGGGAACCGCACCAA
CGTTACAATCGTCCAAAAGGCCAAGAATTATATACACACACAGCGTAGAG
GGAAGGAAAGCGTTCACGGGGCATGTATAGCTCATCATTCATTATGTCTC
TTACAGGCTCACTGCTGTATTGGAGAAAATAAAATGTTTCTCCGACCAAT
ATGTAATGAGTTCATTTCGGTACCTTATAATTTGTTGTCTACTACATAGA
TCATCAGCTCCATTTAATGAGAGCTGCAGTATAAAAAATGTCACCAGCTC
TATTTTTACTTAAGAGCTACAAAGAAAAAGGTCATAATTCACTCCCTATA
GAAAAAAACAATATAAGACAAAAATATTTTAGTACTACCGGCTCTTTTTC
TGAAGAAAACTAAAACACGTTGTTGTTCTTAACTTCAAGTTAGGGGATGA
ATCATCTCCCTCCTCCGGCAGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71315:359..931+

>mRNA_H-elongata_contig71315.14793.1 ID=mRNA_H-elongata_contig71315.14793.1|Name=mRNA_H-elongata_contig71315.14793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig71315:359..931+ (Himanthalia elongata Himel1 dioecious)
ATGGGAATACTCTACCGAAAATTCAAAGTAACTTCAAAGTACGCTTTTTG
GGGTTTCGAGGAGGAGGAAAATACGATTCCACCCTTTCTGATGGTAATTT
CTAACTCAATTATTAATGGGAACCGCACCAACGTTACAATCGTCCAAAAG
GCCAAGAATTATATACACACACAGCGTAGAGGGAAGGAAAGCGTTCACGG
GGCATGTATAGCTCATCATTCATTATGTCTCTTACAGGCTCACTGCTGTA
TTGGAGAAAATAAAATGTTTCTCCGACCAATATGTAATGAGTTCATTTCG
GTACCTTATAATTTGTTGTCTACTACATAGATGGGAATACTCTACCGAAA
ATTCAAAGTAACTTCAAAGTACGCTTTTTGGGGTTTCGAGGAGGAGGAAA
ATACGATTCCACCCTTTCTGATGGTAATTTCTAACTCAATTATTAATGGG
AACCGCACCAACGTTACAATCGTCCAAAAGGCCAAGAATTATATACACAC
ACAGCGTAGAGGGAAGGAAAGCGTTCACGGGGCATGTATAGCTCATCATT
CATTATGTCTCTTACAGGCTCACTGCTGTATTGGAGAAAATAAAATGTTT
CTCCGACCAATATGTAATGAGTTCATTTCGGTACCTTATAATTTGTTGTC
TACTACATAG
back to top