mRNA_H-elongata_contig71268.14789.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI) HSP 1 Score: 192 bits (487), Expect = 1.070e-59 Identity = 92/138 (66.67%), Postives = 106/138 (76.81%), Query Frame = 1
Query: 1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTLA 414
DLKGRERL+KFL DC L+GP RFV +TD ILE VGSFDNLRY DLPKGRYATVSEG+ FECHLN DK+K+ + GS DL+ITRFLDE+G TLLS MLH DGAYEPGA DYW KLR++FG +Q++A
Sbjct: 73 DLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRYATVSEGKGFECHLNCDKVKSIKMVTKQSPGGSF-----DLYITRFLDEEGNTLLSAMLHGVDGAYEPGAADYWDKLRKTFGEDQSVA 205
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA) HSP 1 Score: 160 bits (406), Expect = 9.460e-48 Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1
Query: 1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVS-EGRDFECHLNTDKIKASDVCNGTLSQGSAAKD-DQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
DLKG+ERL K+L DCEL+GPVRFV M D ILE VGSF+NLR+NDL KG YAT+S + FECHLN D++ NG AKD DL+ITRF+D +G+T+LS ML G YE GA+ YW KLRE+FGAEQ L
Sbjct: 46 DLKGKERLQKYLKDCELLGPVRFVSMNDGAILEAVGSFENLRFNDLEKGTYATLSGDDEGFECHLNIDRV------NGITMLTKPAKDASHDLYITRFVDAEGKTVLSAMLQAEGGQYEEGAVAYWTKLREAFGAEQKL 178
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A6U1NZN9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZN9_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.720e-34 Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = 1
Query: 4 LKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEG-RDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLH-DTDGAYEPGAIDYWKKLRESFGAEQTL 411
L+G RL+KF D L+G VRFV +TD ILETVGS++N++ NDL KG++AT + FECH+N D+ V T+S +A + D+ L+ITRF D + +LS+MLH + +G YE G++++W++LRE FG +Q L
Sbjct: 66 LEGIPRLEKFFQDSSLLGAVRFVVVTDGAILETVGSYENMKINDLDKGKFATFKNSDKSFECHVNMDE-----VAKITMSTKNAKQGDRILYITRFYDNADKLILSSMLHPEEEGNYEDGSVEWWEQLREVFGEDQRL 198
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: I2CRE5_NANGC (Heme utilization protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRE5_NANGC) HSP 1 Score: 117 bits (294), Expect = 1.060e-30 Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLP-KGRYAT-VSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
DL G+ERL +FL D +GP+RFVCM D ILE VGSF+N+ D+P +G AT S+ + FE HLN D + + + Q A + D D +I RF+ +G+TLLS+MLH + AY+ A+ +W KL+ FG Q +
Sbjct: 54 DLVGKERLKRFLEDASFLGPIRFVCMNDGGILEAVGSFENMVSKDVPGRGELATFASDDKTFEAHLNLDMVSRVE-----MRQAVAKRGDHDNYIIRFISGEGKTLLSSMLHREEEAYDEDALAWWGKLKGVFGETQEM 187
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A7S3RZZ8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RZZ8_EMIHU) HSP 1 Score: 103 bits (256), Expect = 5.630e-25 Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 31 FLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGA 399
FL+D E +GP RFV + ILE VG+F+ LR ++ PKG ATVS G FECH+ ++ ++ + G A L I R LD++G LLS +LH YE GA+ ++++LRE FGA
Sbjct: 60 FLSDLEFLGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKA------LHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 176
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: R1D395_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D395_EMIHU) HSP 1 Score: 97.8 bits (242), Expect = 2.340e-23 Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 19 RLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGA 399
R F E +GP RFV + ILE VG+F+ LR ++ PKG ATVS G FECH+ ++ ++ + G A L I R LD++G LLS +LH YE GA+ ++++LRE FGA
Sbjct: 13 RASFFSPHLEFLGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKA------LHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 133
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A150GY36_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GY36_GONPE) HSP 1 Score: 92.0 bits (227), Expect = 7.080e-21 Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 52 MGPVRFVCMTDATILETVGSFDNLRYNDLP-KGRYATV-SEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
+G VRF+ + D ILE+V + ++RYN++P +G AT+ S + FECH+ K+K ++ A D D++ TRF E G+ +LST+LH + GAY+P A+ W L +G T
Sbjct: 49 LGKVRFIVLGDGAILESVNDWGSVRYNEVPNRGLLATIASADKSFECHITLSKVKEV-----RFAKSKAKAGDYDIYATRFYGEDGKVMLSTILHGSQGAYDPAAVQAWTSLASKYGDSVTF 165
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: UPI001C403172 (heme utilization protein HuvX n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C403172) HSP 1 Score: 58.5 bits (140), Expect = 3.710e-8 Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 22 LDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPK-GRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLH-DTDGAYEPGAIDYWKKLRESFGAE 402
L FLADCE +G +R + + +LE G +NL Y +P+ YA + FE HLN I+ QG+ I F E + LS L GAYEPG ++ + +LRE++GAE
Sbjct: 5 LKDFLADCESLGTLRIIVTNNTAVLEARGRMENLFY--VPRVPTYANMHNDH-FEFHLNMADIQRVKFEELPAKQGNFTT----YCIRLFKPEAEKASLSLFLQWGKPGAYEPGQVEAFIRLRETYGAE 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71268.14789.1 >prot_H-elongata_contig71268.14789.1 ID=prot_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRback to top mRNA from alignment at H-elongata_contig71268:2016..2895- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71268.14789.1 ID=mRNA_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=880bp|location=Sequence derived from alignment at H-elongata_contig71268:2016..2895- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71268:2016..2895- >mRNA_H-elongata_contig71268.14789.1 ID=mRNA_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig71268:2016..2895- (Himanthalia elongata Himel1 dioecious)back to top |