mRNA_H-elongata_contig71264.14788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71264.14788.1
Unique NamemRNA_H-elongata_contig71264.14788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A6H5KYG4_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.950e-56
Identity = 79/88 (89.77%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    4 ITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            ++AE+VLK+PKWPEKWPFY+DDF+RMDESSDGDFYSQPRLVYHIDD+AVKALTKYY+KALPKGA+VLDICSSWVSHFPKDWEHGKRTG
Sbjct:   57 VSAEDVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHIDDSAVKALTKYYTKALPKGADVLDICSSWVSHFPKDWEHGKRTG 144          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A835Z0P5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.120e-40
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    4 ITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            +  E+VLK+PKWPE++PF   DF R DES D +FY  PRLV HIDDAAVKALT+YYSK LP+GA+VLDICSSWVSHFP++W+HGKR G
Sbjct:   49 LGIEDVLKNPKWPEQYPFKPADFKRQDESVDTEFYEYPRLVLHIDDAAVKALTEYYSKTLPEGADVLDICSSWVSHFPQNWKHGKRVG 136          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A6V1S5I5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5I5_HETAK)

HSP 1 Score: 137 bits (344), Expect = 3.970e-38
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    4 ITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            I AE++LK+PKWP +WPF  DDF RMDE  D  FY   RLVYHIDD AV ALT++Y +  P+GA+VLDICSSWVSHFP+ W+HG+R+G
Sbjct:   46 IKAEDILKAPKWPAEWPFTKDDFKRMDEEEDTVFYQDARLVYHIDDPAVGALTRFYKETFPEGADVLDICSSWVSHFPEGWKHGRRSG 133          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: L1JA50_GUITC (Methyltransf_11 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JA50_GUITC)

HSP 1 Score: 127 bits (319), Expect = 8.540e-35
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEH--GKRTG 267
            +++ E+VLK+PKWP+ WP+   DF+R DES D  FY  PRLVYHIDD A+ ALT YY+K +P+ +++LDICSSWVSHFPKD+    GKR G
Sbjct:    2 RVSVEDVLKNPKWPQSWPYSSKDFSRTDESEDEYFYDTPRLVYHIDDKAIAALTDYYAKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVG 92          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: B8C942_THAPS (Methyltransf_11 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C942_THAPS)

HSP 1 Score: 127 bits (318), Expect = 1.030e-34
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            K  AE VL +PK+P +WP+   DF R DES DG FY QPRLVYHIDD+AV ALT+YY+ A  +G +VLDICSSWVSHFPK+W+ G   G
Sbjct:    2 KELAEKVLTNPKFPPQWPYSPSDFQRSDESDDGIFYDQPRLVYHIDDSAVSALTQYYTDAFNEGEDVLDICSSWVSHFPKEWKGGNVVG 90          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A7S0E449_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E449_9CRYP)

HSP 1 Score: 128 bits (321), Expect = 2.130e-34
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEH--GKRTG 267
            +I+ E+VLK+PKWPE WP+   DF+R DES D  FY  PRLVYHIDD A+ ALT+YY K +P+ +++LDICSSWVSHFPKD+    GKR G
Sbjct:   69 RISVEDVLKNPKWPESWPYSPRDFSRTDESEDEYFYDTPRLVYHIDDKAIGALTEYYGKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVG 159          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A7S1B511_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B511_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.400e-34
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   10 AENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            AE VL++P+WPE+WPF ++DF R DESSD  FY  PRL +HID+ AV+A+TKYYS+   +G +VLDICSSWVSH+PKDW  G   G
Sbjct:   70 AEKVLENPQWPEEWPFTEEDFRRQDESSDDIFYDSPRLCFHIDEPAVEAVTKYYSEVFEQGQDVLDICSSWVSHYPKDWSGGNVVG 155          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A5J4Z6M0_PORPP (Demethylmenaquinone methyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6M0_PORPP)

HSP 1 Score: 124 bits (312), Expect = 3.360e-33
Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            K+  E+ LKSPKWPE+WPF   DF R DES D  FYSQPRLV HIDD A+ ALTKYY+K +  G++VLD+CSSW+SH+P+D    K  G
Sbjct:   56 KVQIEDALKSPKWPEQWPFKPQDFQRQDESIDSYFYSQPRLVTHIDDDAIDALTKYYAKEIKPGSDVLDLCSSWISHYPEDLPLNKVVG 144          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A7S0Z0W2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z0W2_9CRYP)

HSP 1 Score: 124 bits (311), Expect = 7.320e-33
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEH--GKRTG 267
            +IT E+VL +PKWPE+WPF D DF RMDE+ D  FY  PRLVYHID+ AV ALT+YY+K +   +++LDICSSWVSHFPK +    G+R G
Sbjct:   65 QITVEDVLANPKWPEEWPFSDSDFKRMDETDDEIFYDTPRLVYHIDEGAVAALTEYYAKTIKPKSDILDICSSWVSHFPKVFTETMGRRAG 155          
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Match: A0A1E7ELA4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELA4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.040e-32
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   10 AENVLKSPKWPEKWPFYDD-DFNRMDESSDGDFYSQPRLVYHIDDAAVKALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG 267
            AE VL++PK+P++WP+ DD DF+R DES D  FY  PRL YHIDD AV ALTKYYS+ L +G +VLDICSSWVSH+PKD++ GK  G
Sbjct:    9 AEKVLENPKFPDEWPYSDDTDFSRQDESKDTIFYDTPRLCYHIDDDAVSALTKYYSENLKEGDDVLDICSSWVSHYPKDFKGGKVVG 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71264.14788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYG4_9PHAE1.950e-5689.77Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835Z0P5_9STRA3.120e-4070.45S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A6V1S5I5_HETAK3.970e-3864.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1JA50_GUITC8.540e-3559.34Methyltransf_11 domain-containing protein n=1 Tax=... [more]
B8C942_THAPS1.030e-3462.92Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S0E449_9CRYP2.130e-3461.54Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S1B511_9STRA2.400e-3461.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A5J4Z6M0_PORPP3.360e-3360.67Demethylmenaquinone methyltransferase n=1 Tax=Porp... [more]
A0A7S0Z0W2_9CRYP7.320e-3360.44Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A1E7ELA4_9STRA1.040e-3264.37S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71264contigH-elongata_contig71264:2560..3182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue4.9e-44
Seed eggNOG ortholog2880.D7FVV9
EggNOG free text desc.Methyltransferase domain
EggNOG OGs28JTZ@1,2QS7X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-01_002330.1
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.6457949-CDS-H-elongata_contig71264:2559..26951622931112.6457949-CDS-H-elongata_contig71264:2559..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71264 2560..2695 +
1691679703.243643-CDS-H-elongata_contig71264:2559..26951691679703.243643-CDS-H-elongata_contig71264:2559..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71264 2560..2695 +
1622931112.6651342-CDS-H-elongata_contig71264:3048..31821622931112.6651342-CDS-H-elongata_contig71264:3048..3182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71264 3049..3182 +
1691679703.25517-CDS-H-elongata_contig71264:3048..31821691679703.25517-CDS-H-elongata_contig71264:3048..3182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71264 3049..3182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71264.14788.1prot_H-elongata_contig71264.14788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71264 2560..3182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71264.14788.1

>prot_H-elongata_contig71264.14788.1 ID=prot_H-elongata_contig71264.14788.1|Name=mRNA_H-elongata_contig71264.14788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
KITAENVLKSPKWPEKWPFYDDDFNRMDESSDGDFYSQPRLVYHIDDAAV
KALTKYYSKALPKGAEVLDICSSWVSHFPKDWEHGKRTG*
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mRNA from alignment at H-elongata_contig71264:2560..3182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71264.14788.1 ID=mRNA_H-elongata_contig71264.14788.1|Name=mRNA_H-elongata_contig71264.14788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at H-elongata_contig71264:2560..3182+ (Himanthalia elongata Himel1 dioecious)
AAGATCACGGCGGAGAATGTACTGAAGTCACCCAAATGGCCTGAAAAATG GCCTTTCTACGACGATGACTTCAACCGCATGGACGAGAGCAGCGATGGCG ACTTCTACTCTCAGCCCAGGCTGGTGTATCACATTGGTTTGTACGATTTC CGCGAGCTTGAGAGTCGCACGACTCCCTCGCCTAAGCTAACTTGTGCACC GGTCGAGAGCCGGTTGTCACCGCTGTGTGTCTCAGCTATCTGAGCTGGTG TGCGGTATAATGAGACAGTAGGACTTGAGCCCTGTGGTAGCAAGATTAGG CGTTGTTTTCATTTCGTCTCGACTTATGTCATCCCCATCCGCGAGTCATT GTGCGCGCCACTCGCTGCATCCTCCTTGGTAACTGGCGGACCTGCGATCA ATGCGCGATCCCGATAACAATACCTCAAAGGATATGCTGCTTTATGAACA TTTCACATCGCCTTGTTTACGTCTGTTCATACCAACCAGATGATGCCGCG GTTAAAGCACTGACTAAATACTACTCCAAGGCGTTGCCGAAAGGCGCGGA AGTGCTGGACATCTGCTCTTCGTGGGTGAGCCATTTCCCCAAGGACTGGG AGCACGGCAAACGAACAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig71264:2560..3182+

>mRNA_H-elongata_contig71264.14788.1 ID=mRNA_H-elongata_contig71264.14788.1|Name=mRNA_H-elongata_contig71264.14788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig71264:2560..3182+ (Himanthalia elongata Himel1 dioecious)
AAGATCACGGCGGAGAATGTACTGAAGTCACCCAAATGGCCTGAAAAATG
GCCTTTCTACGACGATGACTTCAACCGCATGGACGAGAGCAGCGATGGCG
ACTTCTACTCTCAGCCCAGGCTGGTGTATCACATTGAAGATCACGGCGGA
GAATGTACTGAAGTCACCCAAATGGCCTGAAAAATGGCCTTTCTACGACG
ATGACTTCAACCGCATGGACGAGAGCAGCGATGGCGACTTCTACTCTCAG
CCCAGGCTGGTGTATCACATTGATGATGCCGCGGTTAAAGCACTGACTAA
ATACTACTCCAAGGCGTTGCCGAAAGGCGCGGAAGTGCTGGACATCTGCT
CTTCGTGGGTGAGCCATTTCCCCAAGGACTGGGAGCACGGCAAACGAACA
GGGTGAATGATGCCGCGGTTAAAGCACTGACTAAATACTACTCCAAGGCG
TTGCCGAAAGGCGCGGAAGTGCTGGACATCTGCTCTTCGTGGGTGAGCCA
TTTCCCCAAGGACTGGGAGCACGGCAAACGAACAGGGTGA
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