mRNA_H-elongata_contig71207.14781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71207.14781.1
Unique NamemRNA_H-elongata_contig71207.14781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71207.14781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71207contigH-elongata_contig71207:1032..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.8184016-UTR-H-elongata_contig71207:1031..12851622931111.8184016-UTR-H-elongata_contig71207:1031..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71207 1032..1285 +
1691679702.9571013-UTR-H-elongata_contig71207:1031..12851691679702.9571013-UTR-H-elongata_contig71207:1031..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71207 1032..1285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.8377032-CDS-H-elongata_contig71207:1285..16421622931111.8377032-CDS-H-elongata_contig71207:1285..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71207 1286..1642 +
1691679702.9740143-CDS-H-elongata_contig71207:1285..16421691679702.9740143-CDS-H-elongata_contig71207:1285..1642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71207 1286..1642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71207.14781.1prot_H-elongata_contig71207.14781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71207 1286..1642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71207.14781.1

>prot_H-elongata_contig71207.14781.1 ID=prot_H-elongata_contig71207.14781.1|Name=mRNA_H-elongata_contig71207.14781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MAAARWTLRATHPPEIDAILPSNYVLLKTATPSKFTQRGLESVHLTTEKL
ALQSSARWSSCAHEDHSTPSSAFVRFPLKGKINGWVVEVGQDLKSCGREG
SSALHMTENIALPREIHTD
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mRNA from alignment at H-elongata_contig71207:1032..1642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71207.14781.1 ID=mRNA_H-elongata_contig71207.14781.1|Name=mRNA_H-elongata_contig71207.14781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=611bp|location=Sequence derived from alignment at H-elongata_contig71207:1032..1642+ (Himanthalia elongata Himel1 dioecious)
AAATAATATATGCATAATTTAAGAAACAACTTCGAAGTCTTGGACTTCGG
CTGCAGATGTGGCAAAACCGGGTGCACGAAACGAAGAGGGAAATAAATGC
ATGGACAAAAGCCAAAACTAAAGGACACAGACGTGGAAACAACGGGAAAG
GCATAGGTGCATGAGTTACGCAACAATTTCCAAGAGTTTCGGGGTTGTCT
ACGGGTATGTGCTAGGTACAGACCCCACGGCACCATATTTAAAAACAAAT
TTAGATGGCAGCTGCCAGATGGACTCTTAGAGCCACCCACCCACCGGAAA
TAGACGCTATCTTACCCTCTAATTATGTTTTGTTGAAAACAGCAACCCCA
TCCAAATTTACCCAACGCGGCCTAGAGAGTGTGCATCTAACCACAGAGAA
ATTGGCTCTGCAGTCGTCAGCACGGTGGTCATCCTGTGCGCACGAGGATC
ATTCTACTCCATCCTCCGCATTCGTTCGCTTCCCTTTAAAGGGGAAAATA
AACGGATGGGTGGTGGAGGTAGGGCAGGACCTTAAATCGTGCGGCAGAGA
AGGTAGCTCTGCTCTACACATGACAGAGAATATAGCTCTGCCAAGAGAAA
TACACACCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig71207:1032..1642+

>mRNA_H-elongata_contig71207.14781.1 ID=mRNA_H-elongata_contig71207.14781.1|Name=mRNA_H-elongata_contig71207.14781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig71207:1032..1642+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCTGCCAGATGGACTCTTAGAGCCACCCACCCACCGGAAATAGA
CGCTATCTTACCCTCTAATTATGTTTTGTTGAAAACAGCAACCCCATCCA
AATTTACCCAACGCGGCCTAGAGAGTGTGCATCTAACCACAGAGAAATTG
GCTCTGCAGTCGTCAGCACGGTGGTCATCCTGTGCGCACGAGGATCATTC
TACTCCATCCTCCGCATTCGTTCGCTTCCCTTTAAAGGGGAAAATAAACG
GATGGGTGGTGGAGGTAGGGCAGGACCTTAAATCGTGCGGCAGAGAAGGT
AGCTCTGCTCTACACATGACAGAGAATATAGCTCTGCCAAGAGAAATACA
CACCGATATGGCAGCTGCCAGATGGACTCTTAGAGCCACCCACCCACCGG
AAATAGACGCTATCTTACCCTCTAATTATGTTTTGTTGAAAACAGCAACC
CCATCCAAATTTACCCAACGCGGCCTAGAGAGTGTGCATCTAACCACAGA
GAAATTGGCTCTGCAGTCGTCAGCACGGTGGTCATCCTGTGCGCACGAGG
ATCATTCTACTCCATCCTCCGCATTCGTTCGCTTCCCTTTAAAGGGGAAA
ATAAACGGATGGGTGGTGGAGGTAGGGCAGGACCTTAAATCGTGCGGCAG
AGAAGGTAGCTCTGCTCTACACATGACAGAGAATATAGCTCTGCCAAGAG
AAATACACACCGAT
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