mRNA_H-elongata_contig7117.14777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7117.14777.1
Unique NamemRNA_H-elongata_contig7117.14777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: D7FR92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR92_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 9.860e-51
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSW---EIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRLNHDEIQV 303
            TWSLWLACLSFLFAPFWFNPLSFHWG +V+DYKIWMRWMTG G N        E+WWREEN+YLSRFSLTQKMQ L+RPLIYV+IGYGIGGPQL+ L+H E++V
Sbjct:   20 TWSLWLACLSFLFAPFWFNPLSFHWGKVVQDYKIWMRWMTGTGGNRLQQLGVSEVWWREENSYLSRFSLTQKMQGLVRPLIYVVIGYGIGGPQLLGLDHKELKV 123          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.220e-38
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRL 282
            TWSLWLAC+SFLFAPFWFNPLSF W   V DYK WMRWM+G G +SSNSWE+WWRE+N Y+S+F L QK+Q +L+P  Y++IG GI  P++  L
Sbjct: 1940 TWSLWLACISFLFAPFWFNPLSFEWSKCVSDYKRWMRWMSGTGGSSSNSWEVWWREDNGYMSKFGLGQKLQCMLKPAFYLVIGVGIATPKMAEL 2033          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.360e-36
Identity = 66/101 (65.35%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMRLNHDEIQV 303
            TWSLWLACLSFLFAPFWFNPLSFHWG +V+DYKIWMRWMTG G NSSNSWE                     L+RPLIYV+IGYG+GGPQL+ L+H E++V
Sbjct: 1854 TWSLWLACLSFLFAPFWFNPLSFHWGKVVQDYKIWMRWMTGTGGNSSNSWEG--------------------LVRPLIYVVIGYGVGGPQLLGLDHKELKV 1934          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.800e-34
Identity = 54/83 (65.06%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIG 249
            TWSLWLAC+SFLFAPFWFNPLSF WG  ++DY+ W+RWM+G G +SSNSW++WWREEN Y+S+F L QK+Q +L+P  Y+++G
Sbjct: 1541 TWSLWLACVSFLFAPFWFNPLSFEWGKCMDDYRRWVRWMSGTGGSSSNSWDVWWREENLYVSKFGLGQKLQCMLKPAFYLVVG 1623          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A482SV99_9ARCH (FKS1_dom1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV99_9ARCH)

HSP 1 Score: 114 bits (286), Expect = 1.150e-26
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLL-RPLIYVLIGYGIGGPQLMRLNHDEIQVCKYY 315
            TWSLWLA +SF+F PFWFNPLSF W  + EDY  WMRWM   G NS  SWE WW+EEN +  + S T K+ L + + ++++ I  G+ G +L+    D I V + +
Sbjct: 1644 TWSLWLASISFMFGPFWFNPLSFEWTRLSEDYYAWMRWMAERGGNSEQSWESWWKEENNFYQKISFTWKLFLFIQKSILWIFIAVGLVGSKLLHSKGDRILVFEMF 1749          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S4R501_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R501_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.010e-25
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQL 273
            TWS+WLA +SFL +PFWFNPL+F W  +  DY  ++RWM G G N+S SW+IWW EENAY  + SL  KM  +L+  +YV++  GI G  L
Sbjct: 1773 TWSMWLASISFLASPFWFNPLTFDWSVVTSDYGKYIRWMCGSGGNASKSWDIWWTEENAYYKKLSLPSKMISVLKATLYVIMAIGIWGSDL 1863          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: K3W706_GLOUD (1,3-beta-glucan synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W706_GLOUD)

HSP 1 Score: 103 bits (257), Expect = 9.150e-23
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGI 258
            TWSLWL  LS+ F+PFWFNPL+F W +++ED+++W++WM G G N++ SWE W++EENAY S      K+ + ++ L++ +I   I
Sbjct: 1657 TWSLWLVVLSWYFSPFWFNPLAFEWSDVIEDWRVWLKWMRGDGGNANQSWEAWFKEENAYFSTLRPWAKIVVTMKGLLFTVIALSI 1742          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: F0WVN6_9STRA (1,3-beta-glucan synthase n=2 Tax=Albugo TaxID=65356 RepID=F0WVN6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.340e-22
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGI 258
            TWSLWL  LS+ F+PFWFNPL+F W + VED+++W++WM G G N++ SWE W++EENAY S      K+ + L+ L++ ++   I
Sbjct: 2228 TWSLWLVVLSWTFSPFWFNPLAFEWSDAVEDFRVWVKWMRGDGGNANQSWEAWFKEENAYFSTLRPFAKVCVTLKGLLFTVVALSI 2313          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.800e-22
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQ 270
            TWSLWLA +S L +PFWFNP +  W  +++DY  WM+WM+  G ++  SWE+WW+EE  Y  + + TQ++ +L + LI++ I YGI  P+
Sbjct: 1318 TWSLWLADVSLLASPFWFNPGALEWTRVLDDYSNWMKWMSSSGGSAQKSWEVWWKEEMGYFKQVAPTQRLYILPKSLIWMGIAYGIVTPK 1407          
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Match: A0A7S4EG16_9STRA (1,3-beta-glucan synthase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG16_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.030e-21
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 TWSLWLACLSFLFAPFWFNPLSFHWGNIVEDYKIWMRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYGIGGPQLMR 279
            TWSLWLA +SFL +PFWFNPL+F W  ++ DY +W+RW+ G    S+ SW +W+ EENAY      T K   +++  I  L+  GI    L R
Sbjct: 1767 TWSLWLASISFLASPFWFNPLTFEWNTVITDYGLWVRWIRGTSGGSTKSWSMWYNEENAYYKGLPFTSKCIFMVKAAILYLVADGIWRSDLFR 1859          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7117.14777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR92_ECTSI9.860e-5176.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1S2_9STRA4.220e-3864.891,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A6H5JFR3_9PHAE2.360e-3665.351,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA1.800e-3465.061,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A482SV99_9ARCH1.150e-2647.17FKS1_dom1 domain-containing protein n=1 Tax=archae... [more]
A0A7S4R501_9STRA1.010e-2552.751,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylu... [more]
K3W706_GLOUD9.150e-2346.511,3-beta-glucan synthase n=1 Tax=Globisporangium u... [more]
F0WVN6_9STRA2.340e-2247.671,3-beta-glucan synthase n=2 Tax=Albugo TaxID=6535... [more]
A0A7S2UV62_9STRA5.800e-2245.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EG16_9STRA2.030e-2145.161,3-beta-glucan synthase n=1 Tax=Pseudo-nitzschia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7117contigH-elongata_contig7117:912..2079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue5.9e-19
Seed eggNOG ortholog2880.D7FR92
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7117.14777.1prot_H-elongata_contig7117.14777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7117 1017..2014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.554095-UTR-H-elongata_contig7117:911..10161622931111.554095-UTR-H-elongata_contig7117:911..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 912..1016 +
1691679702.8188744-UTR-H-elongata_contig7117:911..10161691679702.8188744-UTR-H-elongata_contig7117:911..1016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 912..1016 +
1622931111.6013803-UTR-H-elongata_contig7117:2014..20791622931111.6013803-UTR-H-elongata_contig7117:2014..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 2015..2079 +
1691679702.8485832-UTR-H-elongata_contig7117:2014..20791691679702.8485832-UTR-H-elongata_contig7117:2014..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7117 2015..2079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.571357-CDS-H-elongata_contig7117:1016..10641622931111.571357-CDS-H-elongata_contig7117:1016..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 1017..1064 +
1691679702.8295968-CDS-H-elongata_contig7117:1016..10641691679702.8295968-CDS-H-elongata_contig7117:1016..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 1017..1064 +
1622931111.5873284-CDS-H-elongata_contig7117:1771..20141622931111.5873284-CDS-H-elongata_contig7117:1771..2014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 1772..2014 +
1691679702.8385363-CDS-H-elongata_contig7117:1771..20141691679702.8385363-CDS-H-elongata_contig7117:1771..2014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7117 1772..2014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7117.14777.1

>prot_H-elongata_contig7117.14777.1 ID=prot_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MRWMTGMGENSSNSWEIWWREENAYLSRFSLTQKMQLLLRPLIYVLIGYG
IGGPQLMRLNHDEIQVCKYYDGFTNDLAYARSEDSRSKGTVRRVNL*
back to top

mRNA from alignment at H-elongata_contig7117:912..2079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7117.14777.1 ID=mRNA_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig7117:912..2079+ (Himanthalia elongata Himel1 dioecious)
ACGTGGTCCCTGTGGCTGGCGTGTCTCAGCTTCCTGTTTGCTCCCTTCTG GTTCAACCCTCTCTCCTTCCACTGGGGAAATATTGTTGAGGACTACAAAA TATGGATGCGCTGGATGACGGGCATGGGGGAAAACAGCTCCAACAGCTGG GAGGTGGGTGAACCGGCCATTTTTATTTATTTGAGGGGTTCTGGGATTGG CTTGGAATTGGGGCTGGGGCTGGACTCTTTTCCCCCTCCCCCTTTGAAAA GTGAGAGAAAATGTAACAATAGAAAGCCGTGTTGTTCGTTTGACCCCATT GAGATTAATATGATCACGGGAGGCGTTTCCTCGAGGAAAAGACGAGGGTG GCGGGGGCTGGACTCGAGTTATTTTTTTGTTTTCTTAAGGGGGGGACGGG GGAGGTAAGAGTCACCCCTCTTTTTTTTTTCTTCTTCTTTTTGCACCTCC GCTCTTTGGTGAAATTGTCATTGTCATTTTGTTTTTCGCGCACAATGCGA GTGGTATCAACGTTGCTCGGCTGATTCCTGCCCCCTTCGGTAGCAGCATT ATGTATTCATACATTCATATCGCTGGTACACACACAAGAGTGTGTCCCCT TTGTCGCGTTTGACCAGAGGTTTTCGTAATAAATATCATTGATCCCCCTC GATCCCCCCTAGGAGGATCAATACGAGTGGCATAGAAGGACTAGGACGAC AGGGCCGGATTGCGCGGTTATGTGCAATTTAACAAATACACACACACAGA CACACATAGCCCAAACTCTCACAGTTTCTTGTGTGGTGGGTCTCATGTCC TTCTTTTTTCCTCCTCGGCGGGACGGGAAAAAAACAACAAAAAATAACAA AAACAAGCAGATATGGTGGCGCGAGGAAAACGCCTACCTGTCGAGGTTCT CCCTCACACAGAAGATGCAGCTGCTTCTTCGTCCGCTTATCTACGTTTTG ATCGGCTACGGCATCGGGGGCCCACAGCTTATGAGGTTGAATCACGACGA GATACAGGTATGCAAATATTACGATGGATTCACCAATGACCTGGCGTACG CACGTAGCGAGGATTCGCGTTCGAAGGGTACAGTTCGAAGGGTCAATCTG TAGAAAACTTATTATTACTATTACCGTACCATACATACTACATGCAATAC ATAGATATGTCTGAATTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7117:912..2079+

>mRNA_H-elongata_contig7117.14777.1 ID=mRNA_H-elongata_contig7117.14777.1|Name=mRNA_H-elongata_contig7117.14777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig7117:912..2079+ (Himanthalia elongata Himel1 dioecious)
ATGCGCTGGATGACGGGCATGGGGGAAAACAGCTCCAACAGCTGGGAGAT
GCGCTGGATGACGGGCATGGGGGAAAACAGCTCCAACAGCTGGGAGATAT
GGTGGCGCGAGGAAAACGCCTACCTGTCGAGGTTCTCCCTCACACAGAAG
ATGCAGCTGCTTCTTCGTCCGCTTATCTACGTTTTGATCGGCTACGGCAT
CGGGGGCCCACAGCTTATGAGGTTGAATCACGACGAGATACAGGTATGCA
AATATTACGATGGATTCACCAATGACCTGGCGTACGCACGTAGCGAGGAT
TCGCGTTCGAAGGGTACAGTTCGAAGGGTCAATCTGTAGATATGGTGGCG
CGAGGAAAACGCCTACCTGTCGAGGTTCTCCCTCACACAGAAGATGCAGC
TGCTTCTTCGTCCGCTTATCTACGTTTTGATCGGCTACGGCATCGGGGGC
CCACAGCTTATGAGGTTGAATCACGACGAGATACAGGTATGCAAATATTA
CGATGGATTCACCAATGACCTGGCGTACGCACGTAGCGAGGATTCGCGTT
CGAAGGGTACAGTTCGAAGGGTCAATCTGTAG
back to top