mRNA_H-elongata_contig119102.1478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119102.1478.1
Unique NamemRNA_H-elongata_contig119102.1478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.090e-29
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML 291
            +++VYRNY+VL+ H+ DML P  QIL+VQ P+W+  + LL PSVA  +F+ NRC GN  H+LLGAFNYAG L++G+ YLLWKMR+ R+Q+  Y  M+
Sbjct:  100 VVRVYRNYKVLMLHTVDMLPPTVQILIVQAPMWVAAMFLLIPSVASFDFEANRCKGNARHVLLGAFNYAGLLVIGSVYLLWKMRDARRQMTEYRAMM 196
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BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: D7FWB0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.020e-24
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   40 HSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML 291
            H+ DML P  QIL+VQ P+W+  + LL PSVA  +F+ NRC GN  ++LLGAFNYAG L++G+ YLLWKMR+ R+Q+  Y  M+
Sbjct:    3 HTVDMLPPTVQILIVQAPVWVAAMFLLIPSVASFDFEANRCKGNARYVLLGAFNYAGLLVIGSVYLLWKMRDARRQMTEYRAMM 86
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BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-6
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLS--PSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMY 279
            +++VYR++++L  HS DM    AQ+ ++  P WL+ +   S  PS++  N   N CD N+  +    + Y G  ++GA +L ++MR VRKQ+  Y
Sbjct:   80 LVRVYRSWKILCRHSVDMWPAWAQVALLSIP-WLVPVVAYSIKPSLSEFNELGNWCDINVA-IDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFY 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMI3_9PHAE1.090e-2955.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWB0_ECTSI6.020e-2454.76RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G7J3_ECTSI2.160e-634.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119102contigH-elongata_contig119102:143..1329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-25_003680.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.0009909-CDS-H-elongata_contig119102:142..3001622929697.0009909-CDS-H-elongata_contig119102:142..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119102 143..300 +
1691679122.816058-CDS-H-elongata_contig119102:142..3001691679122.816058-CDS-H-elongata_contig119102:142..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119102 143..300 +
1622929697.0306296-CDS-H-elongata_contig119102:1196..13291622929697.0306296-CDS-H-elongata_contig119102:1196..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119102 1197..1329 +
1691679122.8237414-CDS-H-elongata_contig119102:1196..13291691679122.8237414-CDS-H-elongata_contig119102:1196..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119102 1197..1329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119102.1478.1prot_H-elongata_contig119102.1478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119102 143..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119102.1478.1

>prot_H-elongata_contig119102.1478.1 ID=prot_H-elongata_contig119102.1478.1|Name=mRNA_H-elongata_contig119102.1478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFD
TNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML
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mRNA from alignment at H-elongata_contig119102:143..1329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119102.1478.1 ID=mRNA_H-elongata_contig119102.1478.1|Name=mRNA_H-elongata_contig119102.1478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-elongata_contig119102:143..1329+ (Himanthalia elongata Himel1 dioecious)
ATTCTTCAGGTGTACCGCAACTATAGGGTGCTGATACATCACAGCGCCGA
CATGTTGCAGCCACTCGCCCAGATCCTGGTGGTCCAGACGCCTATCTGGC
TCATGACCCTCGCTCTCCTCTCCCCGTCTGTGGCCTACATGAATTTCGAC
ACCAACAGGTACTCTTCACCTAGGTCTATATTATTTTTGATAGCGTTTTT
AATGGGGCAGGGGACAGGGGTTTGTCTGTACTGAATAAGCTTTTGGTGTG
TAAAATCAATCACGTCGACAGGAGAAATGTGCAACTCCCGCCCAATCCCC
CCTGCCCCCCCCCCCGCGTCGAAGTAATCATTCGAAATCGAAAAACGAGG
TGAAAGTGTTTTCCCCAGATGGAGTTCGTGACGATTTTTTTGAGATGCTT
TGTAAAAGCCGCGAGTGGCGCGAACTTATCCTCTGGGCGTTTTTGTTTTT
TGCTTGCCGATGTCATATTGCCTTTCTTTGTCGTTACGTTTTTTAATTAG
ATTTTTTTTTCTTTTCTTTTGTATTTTTCTTTGTTGTTGTTGTTGCTTTC
ATTAAACAGTCCCGTGGGCTCTTCGTTCAATCGTTTTCCGACGGGCCCGC
ATACCAGCAGCCACACGCAGTTCGTTTAACAACTAAGTGTGTTCTCTTTT
TTGTGTTTTGTGTTTTTTGTTTCCTTGGAGATGTCGCTTTTACCGAGTAT
CTGTATCATGTACCATTTTCCATTTCCTTTTGTATTGGAGTACGTTAAAT
GTTCTTTCCTCTCGGGTGGTCTTTTTTTGTTCTACCTTGTGACCACGTGC
TGGATTTTGGCATAATCTTATGTGATACTTAAAAAACAATCAGAGCCATA
CAAAATTGTACTGTGATACTAATAGTAGTGTGCTCCTTGGTGGCGCCGAT
AGCATCGACGTGGAGTGGCGCCCCGAGAGGCCCTATTATTTGCTAACGGT
AAGCTTTGCCGAAGGAATTTGTGGAGTAGTGCCCCATCTCCGTCTCCATA
TACATCTCCACCCGTATTGGTTGGTTTGTTATTGTTATTGTTATTCTCTC
TCAGGTGCGATGGCAACATCGAGCATCTCCTGCTGGGTGCTTTTAATTAT
GCTGGGGCACTCCTCTTGGGAGCCACTTACCTTCTGTGGAAGATGAGGAA
CGTTCGTAAACAGGTGAAAATGTATGGATGCATGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig119102:143..1329+

>mRNA_H-elongata_contig119102.1478.1 ID=mRNA_H-elongata_contig119102.1478.1|Name=mRNA_H-elongata_contig119102.1478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig119102:143..1329+ (Himanthalia elongata Himel1 dioecious)
ATTCTTCAGGTGTACCGCAACTATAGGGTGCTGATACATCACAGCGCCGA
CATGTTGCAGCCACTCGCCCAGATCCTGGTGGTCCAGACGCCTATCTGGC
TCATGACCCTCGCTCTCCTCTCCCCGTCTGTGGCCTACATGAATTTCGAC
ACCAACAGATTCTTCAGGTGTACCGCAACTATAGGGTGCTGATACATCAC
AGCGCCGACATGTTGCAGCCACTCGCCCAGATCCTGGTGGTCCAGACGCC
TATCTGGCTCATGACCCTCGCTCTCCTCTCCCCGTCTGTGGCCTACATGA
ATTTCGACACCAACAGGTGCGATGGCAACATCGAGCATCTCCTGCTGGGT
GCTTTTAATTATGCTGGGGCACTCCTCTTGGGAGCCACTTACCTTCTGTG
GAAGATGAGGAACGTTCGTAAACAGGTGAAAATGTATGGATGCATGCTGG
TGCGATGGCAACATCGAGCATCTCCTGCTGGGTGCTTTTAATTATGCTGG
GGCACTCCTCTTGGGAGCCACTTACCTTCTGTGGAAGATGAGGAACGTTC
GTAAACAGGTGAAAATGTATGGATGCATGCTG
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