prot_H-elongata_contig119102.1478.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119102.1478.1
Unique Nameprot_H-elongata_contig119102.1478.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length97
Homology
BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.090e-29
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML 97
            +++VYRNY+VL+ H+ DML P  QIL+VQ P+W+  + LL PSVA  +F+ NRC GN  H+LLGAFNYAG L++G+ YLLWKMR+ R+Q+  Y  M+
Sbjct:  100 VVRVYRNYKVLMLHTVDMLPPTVQILIVQAPMWVAAMFLLIPSVASFDFEANRCKGNARHVLLGAFNYAGLLVIGSVYLLWKMRDARRQMTEYRAMM 196          
BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: D7FWB0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.020e-24
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0
Query:   14 HSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML 97
            H+ DML P  QIL+VQ P+W+  + LL PSVA  +F+ NRC GN  ++LLGAFNYAG L++G+ YLLWKMR+ R+Q+  Y  M+
Sbjct:    3 HTVDMLPPTVQILIVQAPVWVAAMFLLIPSVASFDFEANRCKGNARYVLLGAFNYAGLLVIGSVYLLWKMRDARRQMTEYRAMM 86          
BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-6
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLS--PSVAYMNFDTNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMY 93
            +++VYR++++L  HS DM    AQ+ ++  P WL+ +   S  PS++  N   N CD N+  +    + Y G  ++GA +L ++MR VRKQ+  Y
Sbjct:   80 LVRVYRSWKILCRHSVDMWPAWAQVALLSIP-WLVPVVAYSIKPSLSEFNELGNWCDINVA-IDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFY 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119102.1478.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMI3_9PHAE1.090e-2955.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWB0_ECTSI6.020e-2454.76RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G7J3_ECTSI2.160e-634.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availableTMHMMTMhelixcoord: 62..81
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119102contigH-elongata_contig119102:143..1329 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119102.1478.1mRNA_H-elongata_contig119102.1478.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119102 143..1329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119102.1478.1 ID=prot_H-elongata_contig119102.1478.1|Name=mRNA_H-elongata_contig119102.1478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ILQVYRNYRVLIHHSADMLQPLAQILVVQTPIWLMTLALLSPSVAYMNFD
TNRCDGNIEHLLLGAFNYAGALLLGATYLLWKMRNVRKQVKMYGCML
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