mRNA_H-elongata_contig711.14773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig711.14773.1
Unique NamemRNA_H-elongata_contig711.14773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.390e-25
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  151 RKEMEMLSDTKRGWRGR-SGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVSII 492
            RKEMEMLSD KRGW+GR  GV  + N   ++G I  + + RR      +A  G +  G L APKD+AQFQR WRRRCR + +RR Y+RL+GP     LFRVEMEP +L Q++S++
Sbjct:   68 RKEMEMLSDPKRGWQGRVGGVAPTTN---VSGRIGRQKAPRRTQRSVDTALRGGAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVV 179          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK)

HSP 1 Score: 101 bits (251), Expect = 5.840e-24
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 1
Query:   34 QDDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            +DD   ++ D MKKRA+H A +YDEFR+MV CA+  PVTRKE+E LS   +GW      Q+S+ ++ L G     SS R     G    +  S +  L  PK+  +F+R WRR+C  D  +  Y+RL+GP RL  LF  +++  +L Q++ 
Sbjct:   26 EDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGW------QNSRTQSGLPGT----SSARAKKKTG-QGEIKASKK--LEVPKNSVEFERDWRRKCNTDLKKIKYLRLVGPRRLAALFAGDLDAALLGQLLG 163          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.300e-21
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  160 MEMLSDTKRGWRGR-SGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVSII 492
            MEMLS  KRGW+GR  GV  +    K++G    + + RR      +A  G +  G L APKD+AQFQR WRRRC  + +RR Y+RLIGP  +  LFRVEMEP +L Q++S++
Sbjct:    1 MEMLSVPKRGWQGRVGGVAPT---TKVSGSTGRQKAPRRTQRSVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVV 109          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A1V9Z2T7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2T7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-17
Identity = 57/165 (34.55%), Postives = 85/165 (51.52%), Query Frame = 1
Query:    1 FQTVRILRVLCQ---DDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            F T  + + L Q   +D + K  D MKKRA+HTA+SYDEF++ V CA L PV+ KE++ LS ++R    R+ + H K  +  A             T G+     +S       PK   +F R W+R C +D  +  Y+ L  P RL  LF+ EM+  + A +V+
Sbjct:    9 FDTASLQKELVQALEEDRKYKATDEMKKRAIHTASSYDEFKNFVLCADLKPVSSKELQNLSKSERQ---RNRLYHKKAASVRA-------------TTGTLTGSNDSRR----PPKSSVEFLRTWKRSCTSDAGKYEYLVLTSPARLGKLFQAEMDADLFADIVA 153          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.740e-17
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   19 LRVLCQDDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            L +  ++D + KK D MKKRA+HTA SYDEFR+ V CA L PV+ K+++ LS + R  R     Q   N    A   K  S+ ++   P +S +                 F R WRR C    D+  YMRL  P R   +F  E+E  ++ Q++ 
Sbjct:   18 LAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDR--RRNRMYQTKPNNPLDASRAKTLSACKKTTPPDTSGD-----------------FLRTWRRSCPTHRDKYQYMRLTTPARFRKMFASELEADLMIQLIE 154          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: T0S406_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S406_SAPDV)

HSP 1 Score: 84.0 bits (206), Expect = 9.290e-17
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    1 FQTVRILRVLCQ--DDERRKKA-DAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            F T  + + L Q  D++R+ KA D MKKRA+HTA SYDEF++ V CA L PV+ KE++ LS ++R           +NR     L  +KSS  +   P +     ++       PK   +FQR W+R C  D  +  Y+    P RL  LF+ E++  +   +V+
Sbjct:    9 FDTASLQKELAQALDEDRKYKATDEMKKRAIHTAASYDEFKNFVLCADLKPVSSKELQNLSKSER----------QRNR-----LYHKKSSSIKATRPATLTGADDA------PPKSSVEFQRTWQRSCSTDAAKLQYLERTTPARLAKLFQAEIDADLFGSIVA 152          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A2D4CAL4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL4_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 2.980e-15
Identity = 45/142 (31.69%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   67 MKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVSII 492
            MKKRA+HTA SYDEF+++V+CA L PV+++E+     ++R                LA  +K K+S ++ P    +A+L E+   ++  P     F R WRR  ++  D+  Y+ L    RL T+F+ +++  +L ++V ++
Sbjct:    1 MKKRAIHTAASYDEFKNLVACADLKPVSQRELRNFXSSERS-------------TNLAYRMKSKASRKKAPI---AASLNETAATMVTPPSSAVDFCRQWRRHLKSTADKFRYLELTTAERLATMFKNDIDADLLVEIVQVL 126          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: K3WRK5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRK5_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 3.270e-15
Identity = 51/167 (30.54%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 FQTVRILRVLCQ---DDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVSII 492
            F T  + + L Q   DD   K  D+MKKRA+HTAT+YDEF+++V+CA L P++++E+   S  +R             +  L+  +K + +F      G    L      L   P +  +F R WRR  +++ ++  Y+ L  P RL  +F+ +M+  ++A++V I+
Sbjct:   18 FDTAALQQELAQALEDDRVYKLTDSMKKRAIHTATNYDEFKNLVACADLKPISQRELRDFSRNER-------------QTNLSYKMKARKAF------GRDLQLKAPLTALNQPPANAVEFCRNWRRYLKSNDEKLRYLMLTTPARLSEIFKSDMDADLMAEIVQIL 165          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: A0A1V9Z8T6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8T6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.410e-15
Identity = 55/151 (36.42%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   34 QDDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            ++D + K  D MKKRA+HTA SYDEFR+ V CA L PVT KE++ LS ++R            NR     L K+KS  R          L  + +     PK  A+F R W+R C ++  +  Y+ L  P RL  LF+ E+E  +   +V 
Sbjct:   23 EEDRKYKATDEMKKRAIHTAGSYDEFRNFVLCADLNPVTSKELQNLSKSQR----------QPNR-----LYKKKSQTRER------VKLLNATDNFAI-PKTSAEFLRNWKRNCSSNALKYEYLVLTTPERLGRLFQAEIEADLFVNIVD 151          
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-14
Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   25 VLCQDDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVTRKEMEMLSDTKR----GWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSANLGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRVEMEPHILAQMVS 486
            +  ++D + K  D MKKRA+HTA SYD+FR+ V CA L PV+ KE++ LS ++R    G++ +S +    ++AK                      +G+ +  +   P    +F R WRR C    D+  Y+++  P R+  LF+ E++  ++ Q+V+
Sbjct:   20 IALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERKRNRGYQTKSLLHVDTSKAKTL--------------------VGKQDAAV--PPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVA 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig711.14773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ59_9PHAE1.390e-2551.30RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S4DL22_HETAK5.840e-2439.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7G465_ECTSI7.300e-2148.21RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1V9Z2T7_9STRA1.400e-1734.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X454_9STRA5.740e-1734.62Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0S406_SAPDV9.290e-1734.55Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A2D4CAL4_PYTIN2.980e-1531.69Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WRK5_GLOUD3.270e-1530.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9Z8T6_9STRA3.410e-1536.42Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
W4H561_9STRA1.200e-1430.38Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig711contigH-elongata_contig711:5696..6685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog112098.XP_008607100.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0015630,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0046983,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.Dynein attachment factor N-terminus
EggNOG OGs2CFN8@1,2S3J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.715817-CDS-H-elongata_contig711:5695..60381622931110.715817-CDS-H-elongata_contig711:5695..6038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig711 5696..6038 -
1691679702.3739715-CDS-H-elongata_contig711:5695..60381691679702.3739715-CDS-H-elongata_contig711:5695..6038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig711 5696..6038 -
1622931110.7316613-CDS-H-elongata_contig711:6536..66851622931110.7316613-CDS-H-elongata_contig711:6536..6685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig711 6537..6685 -
1691679702.3847938-CDS-H-elongata_contig711:6536..66851691679702.3847938-CDS-H-elongata_contig711:6536..6685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig711 6537..6685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig711.14773.1prot_H-elongata_contig711.14773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig711 5696..6685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig711.14773.1

>prot_H-elongata_contig711.14773.1 ID=prot_H-elongata_contig711.14773.1|Name=mRNA_H-elongata_contig711.14773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
FQTVRILRVLCQDDERRKKADAMKKRAVHTATSYDEFRHMVSCAHLTPVT
RKEMEMLSDTKRGWRGRSGVQHSKNRAKLAGLIKEKSSFRRNPTPGSSAN
LGESNEGLLCAPKDYAQFQRIWRRRCRNDHDRRTYMRLIGPGRLPTLFRV
EMEPHILAQMVSII
back to top

mRNA from alignment at H-elongata_contig711:5696..6685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig711.14773.1 ID=mRNA_H-elongata_contig711.14773.1|Name=mRNA_H-elongata_contig711.14773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig711:5696..6685- (Himanthalia elongata Himel1 dioecious)
TTTCAAACAGTACGGATTCTACGTGTGCTATGTCAGGATGATGAACGTCG GAAGAAAGCGGACGCCATGAAAAAACGGGCCGTTCATACTGCTACAAGCT ATGACGAGTTCAGGCATATGGTTTCTTGTGCTCATCTCACTCCCGTCACG TGAGACACCGTCGTCAGTCTGTCGGTCGTAAGCAGCATTACTTCGTACAT CAAATTTACGAGTATCAGGGTCCTTTAGAATGAAGAACCGATAGTGAGAC AGTTCTGTTGACGCGTTTTAGACACTGAAGTTTATCGATCGTCGGTAATC AATTGTCTGAGTCGAGGCTAGCGAGATTCCACTTCCAGAGTCGTCGTGAT ACAGCTGTCGATCAGGCCTATATGGCAATATGGTTGGAACTATTGTTTGC TACCGAGCTGTCGTTCAAGATTAGTGATGCTCGAATGAAGCTCGAATGAA GTGGAAATATTGGATTCTGGACGTTCATGACATTGAGGGCAAATCAGCAC ATAATTAAAGCATCCCAACGTTTTAAAGTGAAGTGAACCTTATTTTTTTA TTACAGTTCAGAAGATATAACTGATAGAAGGTCCCGGTTCGAACTTGGAG TTCAAGAAACCCACTAACCTAGCAACGGTATCGATATGCCCCCTCAGACG GAAGGAGATGGAAATGCTATCGGATACAAAACGGGGTTGGCGAGGCCGTT CTGGAGTTCAGCACTCAAAAAATCGGGCTAAACTAGCGGGCTTAATTAAA GAAAAGTCTTCGTTTAGAAGAAATCCGACTCCTGGTTCATCCGCGAATCT TGGCGAGTCAAACGAGGGTCTCCTTTGTGCTCCCAAGGATTATGCCCAAT TCCAGCGAATATGGAGACGGCGATGCCGCAATGACCACGATCGTCGCACC TACATGCGCCTCATTGGGCCGGGGAGGTTGCCAACTTTATTTCGGGTGGA AATGGAACCGCATATTCTTGCACAAATGGTGTCCATAATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig711:5696..6685-

>mRNA_H-elongata_contig711.14773.1 ID=mRNA_H-elongata_contig711.14773.1|Name=mRNA_H-elongata_contig711.14773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig711:5696..6685- (Himanthalia elongata Himel1 dioecious)
TTTCAAACAGTACGGATTCTACGTGTGCTATGTCAGGATGATGAACGTCG
GAAGAAAGCGGACGCCATGAAAAAACGGGCCGTTCATACTGCTACAAGCT
ATGACGAGTTCAGGCATATGGTTTCTTGTGCTCATCTCACTCCCGTCACT
TTCAAACAGTACGGATTCTACGTGTGCTATGTCAGGATGATGAACGTCGG
AAGAAAGCGGACGCCATGAAAAAACGGGCCGTTCATACTGCTACAAGCTA
TGACGAGTTCAGGCATATGGTTTCTTGTGCTCATCTCACTCCCGTCACAC
GGAAGGAGATGGAAATGCTATCGGATACAAAACGGGGTTGGCGAGGCCGT
TCTGGAGTTCAGCACTCAAAAAATCGGGCTAAACTAGCGGGCTTAATTAA
AGAAAAGTCTTCGTTTAGAAGAAATCCGACTCCTGGTTCATCCGCGAATC
TTGGCGAGTCAAACGAGGGTCTCCTTTGTGCTCCCAAGGATTATGCCCAA
TTCCAGCGAATATGGAGACGGCGATGCCGCAATGACCACGATCGTCGCAC
CTACATGCGCCTCATTGGGCCGGGGAGGTTGCCAACTTTATTTCGGGTGG
AAATGGAACCGCATATTCTTGCACAAATGGTGTCCATAATAACGGAAGGA
GATGGAAATGCTATCGGATACAAAACGGGGTTGGCGAGGCCGTTCTGGAG
TTCAGCACTCAAAAAATCGGGCTAAACTAGCGGGCTTAATTAAAGAAAAG
TCTTCGTTTAGAAGAAATCCGACTCCTGGTTCATCCGCGAATCTTGGCGA
GTCAAACGAGGGTCTCCTTTGTGCTCCCAAGGATTATGCCCAATTCCAGC
GAATATGGAGACGGCGATGCCGCAATGACCACGATCGTCGCACCTACATG
CGCCTCATTGGGCCGGGGAGGTTGCCAACTTTATTTCGGGTGGAAATGGA
ACCGCATATTCTTGCACAAATGGTGTCCATAATA
back to top