mRNA_H-elongata_contig7109.14770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7109.14770.1
Unique NamemRNA_H-elongata_contig7109.14770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.330e-52
Identity = 111/321 (34.58%), Postives = 173/321 (53.89%), Query Frame = 1
Query:    4 IRHVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            +RH D++ A++Q+D+DE++++ LPE        +  L K +YGL Q+   W       +   GF Q  AD CVFR I + +VV  +V + ++I  I + ++ D+    DL     +K+L +  +  GC   R+  A TL   QQ YAE +   F V     IP+  G+K LS+ D      +++ +   P RE +G+LMW+AT T PDI+     + + C     +HW+A +  L Y  RT DL IT+         M  +VD+D+A+    +  VSGG ++ GGG ISWFS   +    ++TE+EYV LA+++ E  FLR
Sbjct:   35 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGR-DLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLR 347          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 6.020e-51
Identity = 111/321 (34.58%), Postives = 173/321 (53.89%), Query Frame = 1
Query:    4 IRHVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            +RH D++ A++Q+D+DE++++ LPE        +  L K +YGL Q+   W       +   GF Q  AD CVFR I + +VV  +V + ++I  I + ++ D+    DL     +K+L +  +  GC   R+  A TL   QQ YAE +   F V     IP+  G+K LS+ D      +++ +   P RE +G+LMW+AT T PDI+     + + C     +HW+A +  L Y  RT DL IT+         M  +VD+D+A+    +  VSGG ++ GGG ISWFS   +    ++TE+EYV LA+++ E  FLR
Sbjct:  209 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGR-DLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLR 521          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 4.450e-50
Identity = 107/319 (33.54%), Postives = 170/319 (53.29%), Query Frame = 1
Query:   10 HVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            H DVE A+++++++E++Y+ LP+        +  L K +YGL Q+   W  +    +   GFEQ  AD CVFR I D  VV ++V + ++I  + + ++ D+    DL     +K+L E  +  GC   RN++   LT  QQ + + +A  + V     +PM++G+K LS  D+ ++  E       P RE VG+LMW+AT T PDI+     + + C     VHW AA+  L Y  RT    I++         +  Y D+D A+    +  VSGG +  GGGA+SWFS   +    ++TE+EYV L +++ E  FLR
Sbjct:   61 HFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLR 371          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.430e-49
Identity = 111/321 (34.58%), Postives = 173/321 (53.89%), Query Frame = 1
Query:    4 IRHVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            +RH D++ A++Q+D+DE++++ LPE        +  L K +YGL Q+   W       +   GF Q  AD CVFR I + +VV  +V + ++I  I + ++ D+    DL     +K+L +  +  GC   R+  A TL   QQ YAE +   F V     IP+  G+K LS+ D      +++ +   P RE +G+LMW+AT T PDI+     + + C     +HW+A +  L Y  RT DL IT+         M  +VD+D+A+    +  VSGG ++ GGG ISWFS   +    ++TE+EYV LA+++ E  FLR
Sbjct:  730 LRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGR-DLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLR 1042          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.180e-47
Identity = 107/319 (33.54%), Postives = 170/319 (53.29%), Query Frame = 1
Query:   10 HVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            H DVE A+++++++E++Y+ LP+        +  L K +YGL Q+   W  +    +   GFEQ  AD CVFR I D  VV ++V + ++I  + + ++ D+    DL     +K+L E  +  GC   RN++   LT  QQ + + +A  + V     +PM++G+K LS  D+ ++  E       P RE VG+LMW+AT T PDI+     + + C     VHW AA+  L Y  RT    I++         +  Y D+D A+    +  VSGG +  GGGA+SWFS   +    ++TE+EYV L +++ E  FLR
Sbjct: 1397 HFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLR 1707          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.190e-47
Identity = 107/319 (33.54%), Postives = 170/319 (53.29%), Query Frame = 1
Query:   10 HVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            H DVE A+++++++E++Y+ LP+        +  L K +YGL Q+   W  +    +   GFEQ  AD CVFR I D  VV ++V + ++I  + + ++ D+    DL     +K+L E  +  GC   RN++   LT  QQ + + +A  + V     +PM++G+K LS  D+ ++  E       P RE VG+LMW+AT T PDI+     + + C     VHW AA+  L Y  RT    I++         +  Y D+D A+    +  VSGG +  GGGA+SWFS   +    ++TE+EYV L +++ E  FLR
Sbjct: 1183 HFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLR 1493          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.250e-47
Identity = 107/319 (33.54%), Postives = 170/319 (53.29%), Query Frame = 1
Query:   10 HVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            H DVE A+++++++E++Y+ LP+        +  L K +YGL Q+   W  +    +   GFEQ  AD CVFR I D  VV ++V + ++I  + + ++ D+    DL     +K+L E  +  GC   RN++   LT  QQ + + +A  + V     +PM++G+K LS  D+ ++  E       P RE VG+LMW+AT T PDI+     + + C     VHW AA+  L Y  RT    I++         +  Y D+D A+    +  VSGG +  GGGA+SWFS   +    ++TE+EYV L +++ E  FLR
Sbjct: 1251 HFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLR 1561          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.780e-47
Identity = 105/319 (32.92%), Postives = 170/319 (53.29%), Query Frame = 1
Query:   10 HVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            H D+E A+++++++E++Y+ LP+        +  L K +YGL Q+   W  +    +   GFEQ  AD CVFR I D  VV ++V + ++I  + + ++ D+    DL     +K+L E  +  GC   RN++   LT  QQ + + +A  + V     +PM++G+K LS  D+ ++  +       P RE VG+LMW+AT T PDI+     + + C     VHW AA+  L Y  RT    I++         +  Y D+D A+    +  VSGG +  GGGA+SWFS   +    ++TE+EYV L +++ E  FLR
Sbjct:  891 HFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATD------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLR 1201          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.490e-45
Identity = 114/321 (35.51%), Postives = 170/321 (52.96%), Query Frame = 1
Query:    4 IRHVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            + H DV+ AY  A +DEE++++LP       + +    + IYGL QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y   T+DL ITY   +     ++ YVD+ +A   D +  VSG A  +GG  +S  S    +   +STE+EY+   E + E  F+R
Sbjct:  845 LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ--RGSGLGLAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVR 1154          
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.570e-45
Identity = 114/321 (35.51%), Postives = 170/321 (52.96%), Query Frame = 1
Query:    4 IRHVDVEVAYLQADIDEEIYVELPEKYRTFPNAVGLLRKVIYGLMQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNILVISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQVYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREAVGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*RTKDLKITYGIVKSRDAVMSAYVDSDHATCPDTQYYVSGGALLLGGGAISWFSYDHRVRVSASTESEYVVLAEIINETKFLR 966
            + H DV+ AY  A +DEE++++LP       + +    + IYGL QS   W       + E GFEQ +ADPCVFR++VD  VV +IV Y ++ILV + + +D E  L  L   F  K+L E ++  GC I R+ +A TL   Q  Y +++ +RF V   S IP   G      +  PK  +E++     P REA+G++MWV+T + PD+SF    + +        HW A  K L Y   T+DL ITY   +     ++ YVD+ +A   D +  VSG A  +GG  +S  S    +   +STE+EY+   E + E  F+R
Sbjct: 1224 LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILV-AGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ--RGSGLGLAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVR 1533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7109.14770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE2.330e-5234.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE6.020e-5134.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE4.450e-5033.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.430e-4934.58Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J4N2_9PHAE1.180e-4733.54Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE1.190e-4733.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE1.250e-4733.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE3.780e-4732.92Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KSG8_9PHAE1.490e-4535.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.570e-4535.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7109contigH-elongata_contig7109:7809..8774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog164328.Phyra71619
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size966
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7109.14770.1prot_H-elongata_contig7109.14770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7109 7944..8528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.06905-UTR-H-elongata_contig7109:7808..79431622931110.06905-UTR-H-elongata_contig7109:7808..7943Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7109 7809..7943 +
1691679702.3087902-UTR-H-elongata_contig7109:7808..79431691679702.3087902-UTR-H-elongata_contig7109:7808..7943Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7109 7809..7943 +
1622931110.0997005-UTR-H-elongata_contig7109:8528..87741622931110.0997005-UTR-H-elongata_contig7109:8528..8774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7109 8529..8774 +
1691679702.3316114-UTR-H-elongata_contig7109:8528..87741691679702.3316114-UTR-H-elongata_contig7109:8528..8774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7109 8529..8774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.0851462-CDS-H-elongata_contig7109:7943..85281622931110.0851462-CDS-H-elongata_contig7109:7943..8528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7109 7944..8528 +
1691679702.3213737-CDS-H-elongata_contig7109:7943..85281691679702.3213737-CDS-H-elongata_contig7109:7943..8528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7109 7944..8528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7109.14770.1

>prot_H-elongata_contig7109.14770.1 ID=prot_H-elongata_contig7109.14770.1|Name=mRNA_H-elongata_contig7109.14770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MQSRLCWFRIFTGGIKEKGFEQSRADPCVFRRIVDVKVVTVIVAYANNIL
VISKAKKDDERTLLDLGLCFKIKDLAEAEFCVGCQITRNRKARTLTFHQQ
VYAETVAKRFSVTKASMIPMATGMKPLSKEDSPKIPKEEKNISCIPSREA
VGALMWVATMTIPDISFTAYNLDKLCDDLGPVHWKAAIKALQYF*
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mRNA from alignment at H-elongata_contig7109:7809..8774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7109.14770.1 ID=mRNA_H-elongata_contig7109.14770.1|Name=mRNA_H-elongata_contig7109.14770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=966bp|location=Sequence derived from alignment at H-elongata_contig7109:7809..8774+ (Himanthalia elongata Himel1 dioecious)
AAAATCCGACATGTCGATGTCGAGGTAGCATATCTTCAAGCTGACATCGA TGAAGAAATTTACGTCGAACTGCCTGAAAAGTACCGCACATTTCCGAACG CGGTCGGCTTGCTGAGGAAGGTCATCTATGGACTGATGCAATCAAGGCTA TGCTGGTTCCGAATATTCACAGGCGGTATTAAAGAGAAGGGGTTCGAACA ATCCCGCGCGGATCCATGCGTATTCAGAAGGATCGTCGACGTTAAAGTTG TGACCGTGATTGTGGCATATGCCAACAATATACTGGTGATAAGCAAAGCA AAAAAGGATGATGAACGAACCTTGTTAGATCTTGGCTTATGCTTCAAGAT TAAGGACCTAGCTGAAGCGGAATTCTGCGTTGGATGTCAAATTACAAGGA ATAGGAAGGCGAGGACTCTGACCTTCCATCAACAAGTCTATGCCGAGACT GTGGCAAAGCGATTTAGCGTCACCAAGGCTAGCATGATCCCTATGGCAAC AGGTATGAAGCCTCTATCTAAGGAGGACAGCCCCAAGATCCCCAAAGAAG AGAAAAATATATCGTGTATACCATCTAGGGAAGCAGTGGGGGCCCTGATG TGGGTGGCTACCATGACAATACCAGATATTTCTTTCACGGCTTATAACCT AGACAAATTATGCGACGACCTCGGACCAGTACACTGGAAGGCGGCGATAA AGGCACTACAATACTTCTGACGGACGAAGGACTTAAAAATCACCTACGGT ATAGTTAAGTCAAGGGACGCGGTGATGTCAGCATACGTTGACTCCGACCA CGCAACATGCCCAGACACTCAATATTATGTCTCAGGTGGGGCACTTCTTC TGGGTGGCGGCGCGATTAGCTGGTTCTCGTACGATCATAGGGTAAGAGTG TCAGCGTCAACCGAGTCGGAGTACGTGGTGCTTGCGGAAATCATTAATGA AACCAAGTTCCTTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig7109:7809..8774+

>mRNA_H-elongata_contig7109.14770.1 ID=mRNA_H-elongata_contig7109.14770.1|Name=mRNA_H-elongata_contig7109.14770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig7109:7809..8774+ (Himanthalia elongata Himel1 dioecious)
ATGCAATCAAGGCTATGCTGGTTCCGAATATTCACAGGCGGTATTAAAGA
GAAGGGGTTCGAACAATCCCGCGCGGATCCATGCGTATTCAGAAGGATCG
TCGACGTTAAAGTTGTGACCGTGATTGTGGCATATGCCAACAATATACTG
GTGATAAGCAAAGCAAAAAAGGATGATGAACGAACCTTGTTAGATCTTGG
CTTATGCTTCAAGATTAAGGACCTAGCTGAAGCGGAATTCTGCGTTGGAT
GTCAAATTACAAGGAATAGGAAGGCGAGGACTCTGACCTTCCATCAACAA
GTCTATGCCGAGACTGTGGCAAAGCGATTTAGCGTCACCAAGGCTAGCAT
GATCCCTATGGCAACAGGTATGAAGCCTCTATCTAAGGAGGACAGCCCCA
AGATCCCCAAAGAAGAGAAAAATATATCGTGTATACCATCTAGGGAAGCA
GTGGGGGCCCTGATGTGGGTGGCTACCATGACAATACCAGATATTTCTTT
CACGGCTTATAACCTAGACAAATTATGCGACGACCTCGGACCAGTACACT
GGAAGGCGGCGATAAAGGCACTACAATACTTCTGAATGCAATCAAGGCTA
TGCTGGTTCCGAATATTCACAGGCGGTATTAAAGAGAAGGGGTTCGAACA
ATCCCGCGCGGATCCATGCGTATTCAGAAGGATCGTCGACGTTAAAGTTG
TGACCGTGATTGTGGCATATGCCAACAATATACTGGTGATAAGCAAAGCA
AAAAAGGATGATGAACGAACCTTGTTAGATCTTGGCTTATGCTTCAAGAT
TAAGGACCTAGCTGAAGCGGAATTCTGCGTTGGATGTCAAATTACAAGGA
ATAGGAAGGCGAGGACTCTGACCTTCCATCAACAAGTCTATGCCGAGACT
GTGGCAAAGCGATTTAGCGTCACCAAGGCTAGCATGATCCCTATGGCAAC
AGGTATGAAGCCTCTATCTAAGGAGGACAGCCCCAAGATCCCCAAAGAAG
AGAAAAATATATCGTGTATACCATCTAGGGAAGCAGTGGGGGCCCTGATG
TGGGTGGCTACCATGACAATACCAGATATTTCTTTCACGGCTTATAACCT
AGACAAATTATGCGACGACCTCGGACCAGTACACTGGAAGGCGGCGATAA
AGGCACTACAATACTTCTGA
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