mRNA_H-elongata_contig71051.14768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71051.14768.1
Unique NamemRNA_H-elongata_contig71051.14768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: D7FJK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK9_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 1.590e-122
Identity = 206/279 (73.84%), Postives = 227/279 (81.36%), Query Frame = 1
Query:  142 MLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALH---PTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEGEMGAKIMGAVLSVLYAARNGLMDHEV 969
            MLHKLETALKEFFQLREM+VPSSEERLIWSLNRFLAAAAKKYYPARIVIVI+GVF+IKGLEMP GALHWLPT+LPAGVR IVST+ATTD+GG  KPHRT+LEL+RR+CPVLMME MNGECQE+IIGAFM  HPN+I +T+EQ     ++RII+LEV SKPMYLRTLLYALRQGVAL    P  K  + S  T         A+     +S    +G    VPDRLLD YLSSEDSISLTSKVLD+YA YVD GEMGA IMGAVLSVLYAARNGLMD EV
Sbjct:    1 MLHKLETALKEFFQLREMEVPSSEERLIWSLNRFLAAAAKKYYPARIVIVIDGVFAIKGLEMPAGALHWLPTELPAGVRFIVSTIATTDKGGTPKPHRTYLELLRRKCPVLMMEAMNGECQEAIIGAFMQMHPNQIQLTKEQ-----IKRIIHLEVQSKPMYLRTLLYALRQGVALESGEPVPKPPSPSVATAAEAAPGVDASSTGRVASN--PDGTAGKVPDRLLDLYLSSEDSISLTSKVLDVYAAYVDRGEMGASIMGAVLSVLYAARNGLMDCEV 272          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A835YIU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIU6_9STRA)

HSP 1 Score: 288 bits (736), Expect = 2.170e-84
Identity = 169/354 (47.74%), Postives = 222/354 (62.71%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTV------ATTDRGGEH-------------------------KPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEGEMGAKIMGAVLSVLYAARNGLMDHEV 969
            V+VGEPGIGK+ALLSNW K+R A +H+DEF+F+YFAGAST A++LSHMLH LETALK+FFQLREM+VP+SEERLIWSLNRFLAAAAK++ P RI+++I+GVF+++G  MP GALHWLP +LP GVR IVSTV        T+  G                           + HRT+ EL RR CP+L +E +    Q +II AF D  P    +T  Q      +RI+ L + +KPM+LRTLLYALR  + +H    +S           + + A    +  +            + LLD +L++ DS++LTSK+LDM AT   +   G K+ GAVLSVLYA+R+GL D EV
Sbjct:   70 VVVGEPGIGKNALLSNWEKQRAAARHKDEFVFKYFAGASTAAQRLSHMLHSLETALKQFFQLREMEVPTSEERLIWSLNRFLAAAAKRHLPTRIIVLIDGVFALRGANMPAGALHWLPMELPPGVRFIVSTVQHEALQVCTNASGXXXXXXXXXXXXXXXXXXXXXXXXXALREHRTYTELRRRGCPMLAVEPLPEAAQHAIITAFSDLPPRGPVLTAAQR-----QRIVALPMRNKPMFLRTLLYALR--LDMHTGAGASXXXXXXXXDTDAPDGAAALAAARA-----------TEALLDAFLATSDSMALTSKLLDMCATLAGDDGEGPKVAGAVLSVLYASRDGLSDEEV 405          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A7S1U833_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U833_9STRA)

HSP 1 Score: 256 bits (655), Expect = 8.030e-74
Identity = 145/326 (44.48%), Postives = 203/326 (62.27%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDE--GEMGAKIM-GAVLSVLYAARNGLMDHEV 969
            V++G+PG GKSALL+NWVK R   +H+DEFLFQ+F G S ++KQL  MLH+LE+ALKE FQLREM+VP +E  +IW+LNR+LAAAAKK+ PARI IVI+G+ ++KG E+P GALHWLPT LPAGVR IV+TV T      H  HRT+ EL+RR+CP++ ME +  + ++SIIG+F     N + +  EQ       R+ + E++S+P++LRT+LYAL   V +             T+P                  G+          LD  LS E S  L S ++D+   YVD+     G+  M G +L+++Y +R G+ D E+
Sbjct:   58 VVLGDPGSGKSALLANWVKDRRRQRHKDEFLFQHFVGCSIKSKQLGQMLHRLESALKEHFQLREMEVPGNESGVIWALNRYLAAAAKKHSPARITIVIDGIDALKGSEIPEGALHWLPTALPAGVRFIVTTVKTQPGTTSH--HRTYAELLRRKCPIIEMEPLGLDVRDSIIGSFSSSIGNALPLDDEQR-----HRLASTELSSQPLFLRTVLYALHLAVKM------------ATMP-----------------FGD---------FLDICLSQESSEGLISMIMDLCCAYVDDTSDNTGSDSMFGKILAIIYVSRYGMSDEEI 338          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: F0YI16_AURAN (NACHT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI16_AURAN)

HSP 1 Score: 234 bits (597), Expect = 9.150e-66
Identity = 143/359 (39.83%), Postives = 199/359 (55.43%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGG--------EHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVP-DRLLDFYLSSEDSISLTSKVLDMYATYVD---------------------------EGEMGAKIMGAVLSVLYAARNGLMDHEV 969
            V+ G  G GKSALL+NWV RR   KHRDEFLFQ+F G S R+KQL+H+L++LE+ALKE FQLREM+VP+SEERL WSLNRFLAAAAKK +PARIVIV++ V  ++G       LHWLPT+LP GVR+IVSTV     G           + HRT+ EL RR+CP + ++ ++ E +  IIG+F+  +   +  + EQA      R++  + +S+P++LRT+LYALR G  +                                         VP D+ +D  L++E S  L ++VL++ + YVD                           +    A I   VL+ L+A+R+GL D E+
Sbjct:   75 VITGSTGCGKSALLANWVNRRRKMKHRDEFLFQHFVGCSPRSKQLAHLLYRLESALKEHFQLREMEVPTSEERLRWSLNRFLAAAAKKQFPARIVIVMDAVNRLRGESSAADTLHWLPTELPQGVRIIVSTVELEQNGSLPDDFYDEGSRVHRTYTELRRRKCPTIRLQPLSVEVRHLIIGSFLKVNQQALQ-SLEQAQQF---RLVTAKASSQPLFLRTILYALRLGFEM---------------------------------------SEVPVDQQIDVCLAAETSSQLIARVLELCSDYVDLTLVSTETEPPSAALQRVAGTTNQPTRDESDAANIFARVLTALFASRHGLSDAEM 390          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A8J2WX16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX16_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.110e-65
Identity = 134/331 (40.48%), Postives = 194/331 (58.61%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGG-------EHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEGEM-GAKIMGAVLSVLYAARNGLMDHEV 969
            V+ G  G GKSALL+NWV  R  TKHRDEFLFQ+F G S ++KQL+H+LH+LE+ALKE FQLREM++P+SEERL WSL+RFLAAA KK +PARIVIV++ V  + G       LHWLP+ LP GVR+IVSTV     G        E + HRT+ EL RR+CP + ++ ++ E +  II +F+  +   + + ++        RI+  + +S+P++LRT+LYALR G  +   T                                       D+ ++ YL++E +  L ++VL+M + YVD      A  +  VL+ LY++R+GL + E+
Sbjct:   51 VITGAAGCGKSALLANWVSLRRKTKHRDEFLFQHFVGCSPQSKQLAHLLHRLESALKEHFQLREMEIPTSEERLRWSLSRFLAAAGKKQFPARIVIVLDAVNCLLGESSTANTLHWLPSQLPQGVRIIVSTVELEQFGSSPDGLFDESRMHRTYTELRRRKCPTIHLQPLSVEVRHLIINSFLAANQQSLQLLKQAQQF----RIVTAKASSQPLFLRTVLYALRLGAEMSNATI--------------------------------------DQQVEVYLAAEVTPVLIARVLEMCSGYVDSTYTEAANNLRRVLTALYSSRHGLTEIEM 339          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A6H5L1R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 4.380e-62
Identity = 125/200 (62.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query:  325 MPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALH---PTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEGEMGAKIMG 915
            MP GALHWLPT+LPAGVR IVST+ATTD+GG  KPHRT+LEL+RR+CPVLMME MNGECQE+IIGAFM  HP +I +T+EQ     ++RII+LEV SKPMYLRTLLYALRQGVAL    P +KSS+ S  T         A+   S +S     G    VPDRLLD YLSSEDSISLTSKVLD+YA    E   G +++G
Sbjct:    1 MPAGALHWLPTELPAGVRFIVSTIATTDKGGTPKPHRTYLELLRRKCPVLMMEAMNGECQEAIIGAFMQMHPKQIQLTKEQ-----IKRIIHLEVQSKPMYLRTLLYALRQGVALESGEPVSKSSSPSVATAAESAPGVDASSTGSVASN--PNGAAGKVPDRLLDLYLSSEDSISLTSKVLDVYAA--SERSDGLRVLG 191          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: F0YRP5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRP5_AURAN)

HSP 1 Score: 179 bits (455), Expect = 2.740e-47
Identity = 119/315 (37.78%), Postives = 171/315 (54.29%), Query Frame = 1
Query:  121 RAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATT----------DRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEG----------------------EMGAKIMGAVLSVLYAARNGLMDHEV 969
            R+KQL+H+L++LE+ALKE FQLREM+VP+SEERL WSLNRFLAAAAKK +PARIVIV++ V  ++G       LHWLPT+LP GVR+IVSTV             D G   + HRT+ EL RR+CP + ++ ++ E +  IIG+F+  +   +  + EQA      R++  + +S+P++LRT+LYALR G  +                                      D  + D+ +D  L++E S  L + VL+M + YVD                        E+   I+  VL+ LYA+R+GL D E+
Sbjct:    1 RSKQLAHLLYRLESALKEHFQLREMEVPTSEERLRWSLNRFLAAAAKKQFPARIVIVLDAVNRLRGESSAADTLHWLPTELPQGVRIIVSTVELEQSNLLSEDLYDEGS--RIHRTYTELRRRKCPTIRLQPLSVEVRHLIIGSFLKVNQQALQ-SLEQAQQF---RLVTAKASSQPLFLRTILYALRLGFEMS-------------------------------------DAPI-DQQIDSCLAAETSSELIACVLEMCSEYVDSTCTTVDTSMSPAPVSKSTELEAREIVPNILARVLTALYASRHGLSDMEM 271          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A482SYQ5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYQ5_9ARCH)

HSP 1 Score: 149 bits (376), Expect = 1.990e-36
Identity = 101/279 (36.20%), Postives = 150/279 (53.76%), Query Frame = 1
Query:  154 LETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVA--TTDRGGEHK-PHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNISTSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDM--YATYVDEGEMG--AKIMGAVLSVLYAARNGLMDHEV 969
            +ETALK+FFQLREM VP +E  L WSLNRFL AAAKK+ PARIVI+I+G+  +K      G L+WLPT+LP  VR IVSTV      RG +    H TF+EL+RRQCPVL +E +  + ++ ++ AF+  H   + +T  Q +     +I N    ++PMYLR LL A+    +L   T  +T                                   D LL+ +L    +  L  K L++   +   D+G+    ++++  ++SV+Y +R+GL + E+
Sbjct:    1 METALKDFFQLREMKVPDTEVELRWSLNRFLEAAAKKHSPARIVIIIDGIHRLKAEATADGTLYWLPTELPPCVRFIVSTVEFERNFRGKKELIQHGTFVELMRRQCPVLRIEPLGVQTRQHVVTAFLGLHTGSLELTPSQLA-----KISNAPSCAQPMYLRALLQAMLLATSL---TNGNT-----------------------------------DDLLERFLQCSTAHELIDKNLNICCQSNGQDDGDETPLSELLAKMMSVVYVSRSGLTETEI 236          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A836SC94_9GAMM (Tetratricopeptide repeat protein (Fragment) n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A836SC94_9GAMM)

HSP 1 Score: 89.4 bits (220), Expect = 5.970e-16
Identity = 61/218 (27.98%), Postives = 112/218 (51.38%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALR 654
            V++GE GIGKSALL+NW  R    KH  +F+F +F G+S  +     ML +L   L++ F++ + D+P+++E +I  L  +LA   +     R++I+++G   +  LE+     HWLP  +PA  RL++ST+++    G+                 L +  ++   Q   I  ++ R   ++         H +++++    T+ P+YL+ +L  LR
Sbjct:  264 VILGESGIGKSALLANWA-RDYQEKHPTDFVFWHFCGSSQASTDQIAMLRRLMRHLQQSFKIED-DIPTTDEAVIEQLPLWLAQVQQ-----RVIIILDG---LNQLEINAKTAHWLPHFIPATTRLLLSTLSSEGIKGD----------------TLTLAPLSESDQGEFIVQYLARFGRQLE-------DHYIKQLVAAPQTANPLYLQVILEELR 448          
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Match: A0A496VI41_9GAMM (NACHT domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496VI41_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 9.980e-16
Identity = 65/218 (29.82%), Postives = 113/218 (51.83%), Query Frame = 1
Query:    1 VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLHKLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVINGVFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLELVRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIINLEVTSKPMYLRTLLYALR 654
            V++GE GIGKSALL+NW +   A KH+DE +F +F G+S  +     ML +L   L+  FQ+ + D+P + E +I  L  +LA   +     R++I+ +G   +  LE+      WLP  +PA +RL +ST++T    G+     TF           M+  +    Q  +I  ++DR+  +++          +++++    T+ P+YL+ +L  LR
Sbjct:    6 VILGESGIGKSALLANWARDYQA-KHQDELVFWHFCGSSPASTDPIAMLRRLMKTLQLRFQIED-DIPMTTETVIEQLPLWLAKVQQ-----RVIIIFDG---LNQLEINPKTKDWLPDFMPANIRLFLSTLSTQGMKGD-----TF-----------MVAPLPEPEQGQLITDYLDRYGRQLD-------EPYLQKLVAAPQTANPLYLKVILEELR 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71051.14768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK9_ECTSI1.590e-12273.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIU6_9STRA2.170e-8447.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U833_9STRA8.030e-7444.48Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YI16_AURAN9.150e-6639.83NACHT domain-containing protein n=1 Tax=Aureococcu... [more]
A0A8J2WX16_9STRA2.110e-6540.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5L1R0_9PHAE4.380e-6262.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YRP5_AURAN2.740e-4737.78Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A482SYQ5_9ARCH1.990e-3636.20Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A836SC94_9GAMM5.970e-1627.98Tetratricopeptide repeat protein (Fragment) n=2 Ta... [more]
A0A496VI41_9GAMM9.980e-1629.82NACHT domain-containing protein (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71051contigH-elongata_contig71051:278..2631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue4e-104
Seed eggNOG ortholog2880.D7FJK9
EggNOG OGs29K1Z@1,2RTAV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size975
Cds size975
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.8460412-CDS-H-elongata_contig71051:277..4301622931109.8460412-CDS-H-elongata_contig71051:277..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 278..430 +
1691679702.1923752-CDS-H-elongata_contig71051:277..4301691679702.1923752-CDS-H-elongata_contig71051:277..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 278..430 +
1622931109.8621812-CDS-H-elongata_contig71051:635..7001622931109.8621812-CDS-H-elongata_contig71051:635..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 636..700 +
1691679702.2019145-CDS-H-elongata_contig71051:635..7001691679702.2019145-CDS-H-elongata_contig71051:635..700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 636..700 +
1622931109.8739557-CDS-H-elongata_contig71051:975..10721622931109.8739557-CDS-H-elongata_contig71051:975..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 976..1072 +
1691679702.2120566-CDS-H-elongata_contig71051:975..10721691679702.2120566-CDS-H-elongata_contig71051:975..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 976..1072 +
1622931109.8888772-CDS-H-elongata_contig71051:1340..14831622931109.8888772-CDS-H-elongata_contig71051:1340..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 1341..1483 +
1691679702.2200763-CDS-H-elongata_contig71051:1340..14831691679702.2200763-CDS-H-elongata_contig71051:1340..1483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 1341..1483 +
1622931109.9045029-CDS-H-elongata_contig71051:1762..18861622931109.9045029-CDS-H-elongata_contig71051:1762..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 1763..1886 +
1691679702.2277908-CDS-H-elongata_contig71051:1762..18861691679702.2277908-CDS-H-elongata_contig71051:1762..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 1763..1886 +
1622931109.9206326-CDS-H-elongata_contig71051:2025..23371622931109.9206326-CDS-H-elongata_contig71051:2025..2337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 2026..2337 +
1691679702.236148-CDS-H-elongata_contig71051:2025..23371691679702.236148-CDS-H-elongata_contig71051:2025..2337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 2026..2337 +
1622931109.9360473-CDS-H-elongata_contig71051:2550..26311622931109.9360473-CDS-H-elongata_contig71051:2550..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 2551..2631 +
1691679702.245876-CDS-H-elongata_contig71051:2550..26311691679702.245876-CDS-H-elongata_contig71051:2550..2631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71051 2551..2631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71051.14768.1prot_H-elongata_contig71051.14768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71051 278..2631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71051.14768.1

>prot_H-elongata_contig71051.14768.1 ID=prot_H-elongata_contig71051.14768.1|Name=mRNA_H-elongata_contig71051.14768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
VLVGEPGIGKSALLSNWVKRRTATKHRDEFLFQYFAGASTRAKQLSHMLH
KLETALKEFFQLREMDVPSSEERLIWSLNRFLAAAAKKYYPARIVIVING
VFSIKGLEMPGGALHWLPTDLPAGVRLIVSTVATTDRGGEHKPHRTFLEL
VRRQCPVLMMEIMNGECQESIIGAFMDRHPNEINITREQASTHIVRRIIN
LEVTSKPMYLRTLLYALRQGVALHPTTKSSTLSATTTLPCQSSNCATKNI
STSSYIIGEGFDKSVPDRLLDFYLSSEDSISLTSKVLDMYATYVDEGEMG
AKIMGAVLSVLYAARNGLMDHEVR*
back to top

mRNA from alignment at H-elongata_contig71051:278..2631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71051.14768.1 ID=mRNA_H-elongata_contig71051.14768.1|Name=mRNA_H-elongata_contig71051.14768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2354bp|location=Sequence derived from alignment at H-elongata_contig71051:278..2631+ (Himanthalia elongata Himel1 dioecious)
GTTCTTGTAGGTGAACCGGGAATTGGAAAGAGCGCATTGTTATCGAACTG GGTCAAGCGGCGGACGGCAACGAAACATCGAGATGAGTTCTTGTTTCAGT ATTTCGCAGGGGCGTCAACAAGAGCAAAGCAACTGTCTCACATGCTCCAC AAAGTGAGTGGTGTGTATAAAATTACTGTATAATATCGGAAGAGAGTTAG TGAGGTTCCAGCTGTGTTCAAATTGCGAAGTGGAGCTCGATCTAGTAAAG TGCGTTCAGTGATTGTCCCGGTACTCATCGTGATAGTTACGTCCCAGGAG GGGGAAAACCAGTGGCAGTTTGCATTAATTATGCAAGTACTCGTTATCTT TGTCGCAGCTGGAAACCGCACTGAAGGAATTCTTTCAGCTGAGGGAAATG GACGTGCCTTCCTCTGAAGAAAGGTTTGTCTGGCTTCGCGGAGTTCCATT GGCCGGCGTAAAGTTTTGTACCATTATAGCCTCCTTCACTGGTGCGGAAT TTTTGTTAACGGGCCCACAACAGAAGCATCCTTTGTTCATACCATATTTT CCTTAACGAAACTACCGTACGTATTCATATTTATAAACCACTGGCATGCC GTACTATCTGATATGTCAACATGACTGCTACACGCTACCTGACGACGCAC CCTTAGGGTTGATGTACGTTACAAACTCCAATCAATATACATCCACAGAT TAATTTGGTCACTGAACCGTTTCCTTGCTGCGGCTGCAAAGAAGTACTAC CCGGCAAGGATCGTGATAGTGATCAACGGCGTTTTTTCAATCAAGGTCGG ACTAAATGCTGTTCAGGGCAGTGCAGTATTTCTAACGCGTGACTAGGCCC CTCGGGAGAGGAGGTATATTTATAGTATAATGCCACACCTTATCGATGTT TTTGGAAGTCAGTATCTTAGATAACAAGCAAGCCCCTCGTAGTTAAACGC ATGGGGGGAAAATCTAGAGGTTACGGCCCAACGTTGGCTCTTCTTTGCTT CCTAGCGAGCTTTGCCGTGCAGTCCTTAGGGACATATTCATGGAGAGGGT TGTTATATTTCAGGGTCTGGAAATGCCTGGTGGTGCTCTCCATTGGCTTC CAACCGACCTCCCAGCGGGTGTGAGATTAATCGTATCCACAGTTGCAACT ACGGACAGAGGAGGGGAACATAAGCCACACCGAACATTCTTGGAACTTGT CCGCCGGTGAGATACTTTTTTCGCCGCATTGATAAAAAATAATGCTCTCC TCTAAAATATCTCGTTTGAATTATCCATTTTGAATTATCTTCTTTGGATG GTCTTCTTTGAATGATCTCATTTCAATGCTCTATTTTAGATGGTCTCCTT TGGTCGATCGTTTTCCAGTCATTATTCGCGTTAATGACCTGAAAAATACA CTATCTTCAATACATCACCCTAGGATATGTTTCGGTGTACGTCCGATACC CTTGATGTTTATTCGATGTTGCCCTTGGTCGCCAGACAATGCCCGGTCCT GATGATGGAGATCATGAACGGTGAATGTCAAGAGTCCATCATCGGTGCGT TCATGGATAGGCACCCAAACGAGATTAATATCACCAGGGAACAGGCAAGC ACACATATCGTTCCAAATCCAGGTTACGGCGGCTGTGTATTCATCCATGC TACCCATGTTTCCGTTGGCCCATCCACGTCTCTATGCAATTCCGCTTTTG ACTCCAGTGTGGTATTATTCCGGCCATCACCCTTCCAAATCTCCTCAGGT CAGGAGAATCATAAACCTGGAAGTAACATCTAAACCAATGTACCTTCGTA CGCTACTCTATGCGCTACGCCAAGGAGTGGCGCTCCACCCGACGACGAAA AGCTCTACGCTTTCAGCTACCACGACCCTTCCTTGCCAGTCATCGAATTG CGCTACTAAAAATATATCTACCTCTAGCTATATTATCGGCGAAGGTTTCG ACAAAAGTGTTCCAGACAGATTGTTAGACTTCTACCTGTCGTCGGAAGAC AGCATCTCACTTACGTCAAAGGTACTGGACATGTATGCGACATATGTCGA TGAAGGAGAGGTGAGCCTAGTTGGAAAAAATACAGAGATTCTAGAGCGTT CATTGCTTATATCCCAAACTTTGCTGAAGCATGTCATGTAAAGTAGCATG CGCCTCTAGGAGTCAGCTCATGACAATATACTTCCAGCGTTAGGCTCTCC TTGGGAAGCTTCGCACATAACAACCAAGTCCCTGATATCGAGGTGCACTA TACGTCTGCGGTCGTCGTTATAGATGGGTGCGAAGATCATGGGGGCAGTT TTGTCTGTTCTGTACGCCGCCCGAAATGGTCTGATGGATCACGAGGTGAG GTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71051:278..2631+

>mRNA_H-elongata_contig71051.14768.1 ID=mRNA_H-elongata_contig71051.14768.1|Name=mRNA_H-elongata_contig71051.14768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig71051:278..2631+ (Himanthalia elongata Himel1 dioecious)
GTTCTTGTAGGTGAACCGGGAATTGGAAAGAGCGCATTGTTATCGAACTG
GGTCAAGCGGCGGACGGCAACGAAACATCGAGATGAGTTCTTGTTTCAGT
ATTTCGCAGGGGCGTCAACAAGAGCAAAGCAACTGTCTCACATGCTCCAC
AAAGTTCTTGTAGGTGAACCGGGAATTGGAAAGAGCGCATTGTTATCGAA
CTGGGTCAAGCGGCGGACGGCAACGAAACATCGAGATGAGTTCTTGTTTC
AGTATTTCGCAGGGGCGTCAACAAGAGCAAAGCAACTGTCTCACATGCTC
CACAAACTGGAAACCGCACTGAAGGAATTCTTTCAGCTGAGGGAAATGGA
CGTGCCTTCCTCTGAAGAAAGCTGGAAACCGCACTGAAGGAATTCTTTCA
GCTGAGGGAAATGGACGTGCCTTCCTCTGAAGAAAGATTAATTTGGTCAC
TGAACCGTTTCCTTGCTGCGGCTGCAAAGAAGTACTACCCGGCAAGGATC
GTGATAGTGATCAACGGCGTTTTTTCAATCAAGATTAATTTGGTCACTGA
ACCGTTTCCTTGCTGCGGCTGCAAAGAAGTACTACCCGGCAAGGATCGTG
ATAGTGATCAACGGCGTTTTTTCAATCAAGGGTCTGGAAATGCCTGGTGG
TGCTCTCCATTGGCTTCCAACCGACCTCCCAGCGGGTGTGAGATTAATCG
TATCCACAGTTGCAACTACGGACAGAGGAGGGGAACATAAGCCACACCGA
ACATTCTTGGAACTTGTCCGCCGGGTCTGGAAATGCCTGGTGGTGCTCTC
CATTGGCTTCCAACCGACCTCCCAGCGGGTGTGAGATTAATCGTATCCAC
AGTTGCAACTACGGACAGAGGAGGGGAACATAAGCCACACCGAACATTCT
TGGAACTTGTCCGCCGACAATGCCCGGTCCTGATGATGGAGATCATGAAC
GGTGAATGTCAAGAGTCCATCATCGGTGCGTTCATGGATAGGCACCCAAA
CGAGATTAATATCACCAGGGAACAGGCAAGCACACATATCACAATGCCCG
GTCCTGATGATGGAGATCATGAACGGTGAATGTCAAGAGTCCATCATCGG
TGCGTTCATGGATAGGCACCCAAACGAGATTAATATCACCAGGGAACAGG
CAAGCACACATATCGTCAGGAGAATCATAAACCTGGAAGTAACATCTAAA
CCAATGTACCTTCGTACGCTACTCTATGCGCTACGCCAAGGAGTGGCGCT
CCACCCGACGACGAAAAGCTCTACGCTTTCAGCTACCACGACCCTTCCTT
GCCAGTCATCGAATTGCGCTACTAAAAATATATCTACCTCTAGCTATATT
ATCGGCGAAGGTTTCGACAAAAGTGTTCCAGACAGATTGTTAGACTTCTA
CCTGTCGTCGGAAGACAGCATCTCACTTACGTCAAAGGTACTGGACATGT
ATGCGACATATGTCGATGAAGGAGAGGTCAGGAGAATCATAAACCTGGAA
GTAACATCTAAACCAATGTACCTTCGTACGCTACTCTATGCGCTACGCCA
AGGAGTGGCGCTCCACCCGACGACGAAAAGCTCTACGCTTTCAGCTACCA
CGACCCTTCCTTGCCAGTCATCGAATTGCGCTACTAAAAATATATCTACC
TCTAGCTATATTATCGGCGAAGGTTTCGACAAAAGTGTTCCAGACAGATT
GTTAGACTTCTACCTGTCGTCGGAAGACAGCATCTCACTTACGTCAAAGG
TACTGGACATGTATGCGACATATGTCGATGAAGGAGAGATGGGTGCGAAG
ATCATGGGGGCAGTTTTGTCTGTTCTGTACGCCGCCCGAAATGGTCTGAT
GGATCACGAGGTGAGGTGAATGGGTGCGAAGATCATGGGGGCAGTTTTGT
CTGTTCTGTACGCCGCCCGAAATGGTCTGATGGATCACGAGGTGAGGTGA
back to top