mRNA_H-elongata_contig71040.14767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71040.14767.1
Unique NamemRNA_H-elongata_contig71040.14767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.280e-51
Identity = 127/250 (50.80%), Postives = 151/250 (60.40%), Query Frame = 1 
Query:    1 VRQWPARAAGSLVLGAVLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHSGGNGNGQYCDSTVAS-EQQVFVERLNKALFAARAGEAAAQQGLLEEVRNILAATGESGGISAERILRQFNAKRFAEASKAWSTAEG-IAGADPLDPLFFAPPSTPIYKTNPSSSSHQYHGSSFPGTA----ECSNGA----YCSPDGVEGGFGTPRGYQGNGGGDSAGSEGSAS----------GRRFNRRPCAGGGWVC 690
            VR W  R A S+V+G VLG  A +  L  +     S C+G + TSPWW +GG G     DS  A    Q F +RL+KALFAARAGEAAAQQGLLE++RNILAATGESGGISAE+ILRQFNAKRF EASKAWS AEG +AG+DPLDPLFFAPP+ P+  +  +S   Q   SS P  A    +C+ GA    +CS D      G           DS  +  + S          GR+  RR C GGGWVC
Sbjct:  404 VRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSVCAGADATSPWWSTGGAG-----DSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASASQQPQPSSSSIPHGATPATDCAGGASGSTFCSAD-----SGXXXXXX-----DSVRANMAESVRRVKGFRDGGRQEYRRHCGGGGWVC 638
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BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.810e-51
Identity = 118/234 (50.43%), Postives = 141/234 (60.26%), Query Frame = 1 
Query:   49 VLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHSGGNGNGQYCDSTVAS-EQQVFVERLNKALFAARAGEAAAQQGLLEEVRNILAATGESGGISAERILRQFNAKRFAEASKAWSTAEG-IAGADPLDPLFFAPPSTPIYKTNPSSSSHQYHGSSFPGTA----ECSNGA----YCSPDGVEGGFGTPRGYQGNGGGDSAGSEGSAS----------GRRFNRRPCAGGGWVC 690
            +LG  A +  L  +   + S C+G + TSPWW +GG G     DS  A    Q F +RL+KALFAARAGEAAAQQGLLE++RNILAATGESGGISAE+ILRQFNAKRF EASKAWS AEG +AG+DPLDPLFFAPP+ P+  +  SS   Q   SS P  A    +C+ GA    +CS D                  DS  +  + S          GR+  RR C GGGWVC
Sbjct:    1 MLGSAATFCALRAATTKTGSVCAGADATSPWWSTGGAG-----DSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASSSQQPQPSSSSVPHGATPATDCAGGASGSAFCSADSXXXXXXXXX--------DSVRANMAESVRRAKGFRDGGRQEYRRHCGGGGWVC 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLQ8_9PHAE3.280e-5150.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G052_ECTSI4.810e-5150.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71040contigH-elongata_contig71040:3..1170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007270.1
Exons2
Model size693
Cds size693
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.7925932-CDS-H-elongata_contig71040:2..2811622931109.7925932-CDS-H-elongata_contig71040:2..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71040 3..281 +
1691679702.1756217-CDS-H-elongata_contig71040:2..2811691679702.1756217-CDS-H-elongata_contig71040:2..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71040 3..281 +
1622931109.8094811-CDS-H-elongata_contig71040:756..11701622931109.8094811-CDS-H-elongata_contig71040:756..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71040 757..1170 +
1691679702.1834528-CDS-H-elongata_contig71040:756..11701691679702.1834528-CDS-H-elongata_contig71040:756..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71040 757..1170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71040.14767.1prot_H-elongata_contig71040.14767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71040 3..1170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71040.14767.1

>prot_H-elongata_contig71040.14767.1 ID=prot_H-elongata_contig71040.14767.1|Name=mRNA_H-elongata_contig71040.14767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
VRQWPARAAGSLVLGAVLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHS
GGNGNGQYCDSTVASEQQVFVERLNKALFAARAGEAAAQQGLLEEVRNIL
AATGESGGISAERILRQFNAKRFAEASKAWSTAEGIAGADPLDPLFFAPP
STPIYKTNPSSSSHQYHGSSFPGTAECSNGAYCSPDGVEGGFGTPRGYQG
NGGGDSAGSEGSASGRRFNRRPCAGGGWVC*
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mRNA from alignment at H-elongata_contig71040:3..1170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71040.14767.1 ID=mRNA_H-elongata_contig71040.14767.1|Name=mRNA_H-elongata_contig71040.14767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig71040:3..1170+ (Himanthalia elongata Himel1 dioecious)
GTACGCCAGTGGCCCGCGCGCGCCGCCGGTTCCCTCGTGCTTGGCGCCGT
TCTCGGTGGTGGCGCCATCTACCACATCCTCTCGCGCTCCGCGGCTTCCT
CCGTGTCTTCGTGCTCGGGTGTCGAGGACACCTCGCCGTGGTGGCACAGC
GGTGGCAATGGCAACGGCCAGTACTGTGACTCTACAGTGGCATCCGAACA
GCAGGTCTTTGTCGAGCGACTGAACAAAGCACTCTTCGCGGCAAGGGCTG
GAGAAGCGGCGGCCCAACAGGGTCTACTGGTGAGTTGACGGGAGATCGGG
GTGCGTGCCTTTTGTCCCACTGCCCGTGATATTTAGCGGCCGCGATTGTG
TCGTATACCATGGCAAGGAGGTTTTTCGCTAATCCCATTTTTCTGTCACA
CTGATAACGCCACCCTTTGCCATAAAAACATATGGAGGCGTTGTGCCTTG
CGACGTGAAAGTTCTTTATCGTCTTGTTTCTGTTGGCCGCAATTGAGTTT
ACGTTCTCGACAACGTCTGGAGAGGTGGACGACGATGTTAATATATTATT
TTAGCTCTTGACTCTGATAATGATCAAGTGACAAATGGCGAATCGCTTGT
CTAAACGAGAATACTCATCTTAAACACGAAATTTCTTACCTTGCACGCAT
CAAATCGAGTAAAGCCAGATGCGCAAAGCCATCGCATCATCGTTTTGTGT
GTTGTGACGTCATAGTCCCACGCCTCCCTGCTGGAAAACATGCTCGAAAT
GCAGGAGGAAGTACGCAATATTTTGGCCGCCACCGGCGAGAGCGGAGGCA
TCAGCGCGGAGCGGATCCTCCGGCAATTCAATGCCAAGCGCTTCGCTGAG
GCCTCCAAGGCTTGGTCAACTGCCGAAGGCATCGCTGGCGCGGACCCTCT
CGATCCCCTCTTCTTCGCCCCACCGTCGACCCCAATTTATAAAACTAATC
CTTCCTCGTCTTCGCATCAGTACCATGGTTCGTCCTTCCCAGGGACGGCA
GAGTGCTCCAATGGGGCATACTGCTCGCCCGATGGTGTTGAAGGCGGCTT
CGGTACACCGCGTGGGTATCAAGGCAACGGCGGTGGCGATAGCGCTGGCT
CGGAGGGTAGTGCTTCCGGTAGGCGTTTCAATCGCAGACCCTGTGCCGGG
GGCGGGTGGGTGTGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71040:3..1170+

>mRNA_H-elongata_contig71040.14767.1 ID=mRNA_H-elongata_contig71040.14767.1|Name=mRNA_H-elongata_contig71040.14767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig71040:3..1170+ (Himanthalia elongata Himel1 dioecious)
GTACGCCAGTGGCCCGCGCGCGCCGCCGGTTCCCTCGTGCTTGGCGCCGT
TCTCGGTGGTGGCGCCATCTACCACATCCTCTCGCGCTCCGCGGCTTCCT
CCGTGTCTTCGTGCTCGGGTGTCGAGGACACCTCGCCGTGGTGGCACAGC
GGTGGCAATGGCAACGGCCAGTACTGTGACTCTACAGTGGCATCCGAACA
GCAGGTCTTTGTCGAGCGACTGAACAAAGCACTCTTCGCGGCAAGGGCTG
GAGAAGCGGCGGCCCAACAGGGTCTACTGGTACGCCAGTGGCCCGCGCGC
GCCGCCGGTTCCCTCGTGCTTGGCGCCGTTCTCGGTGGTGGCGCCATCTA
CCACATCCTCTCGCGCTCCGCGGCTTCCTCCGTGTCTTCGTGCTCGGGTG
TCGAGGACACCTCGCCGTGGTGGCACAGCGGTGGCAATGGCAACGGCCAG
TACTGTGACTCTACAGTGGCATCCGAACAGCAGGTCTTTGTCGAGCGACT
GAACAAAGCACTCTTCGCGGCAAGGGCTGGAGAAGCGGCGGCCCAACAGG
GTCTACTGGAGGAAGTACGCAATATTTTGGCCGCCACCGGCGAGAGCGGA
GGCATCAGCGCGGAGCGGATCCTCCGGCAATTCAATGCCAAGCGCTTCGC
TGAGGCCTCCAAGGCTTGGTCAACTGCCGAAGGCATCGCTGGCGCGGACC
CTCTCGATCCCCTCTTCTTCGCCCCACCGTCGACCCCAATTTATAAAACT
AATCCTTCCTCGTCTTCGCATCAGTACCATGGTTCGTCCTTCCCAGGGAC
GGCAGAGTGCTCCAATGGGGCATACTGCTCGCCCGATGGTGTTGAAGGCG
GCTTCGGTACACCGCGTGGGTATCAAGGCAACGGCGGTGGCGATAGCGCT
GGCTCGGAGGGTAGTGCTTCCGGTAGGCGTTTCAATCGCAGACCCTGTGC
CGGGGGCGGGTGGGTGTGCTAAGAGGAAGTACGCAATATTTTGGCCGCCA
CCGGCGAGAGCGGAGGCATCAGCGCGGAGCGGATCCTCCGGCAATTCAAT
GCCAAGCGCTTCGCTGAGGCCTCCAAGGCTTGGTCAACTGCCGAAGGCAT
CGCTGGCGCGGACCCTCTCGATCCCCTCTTCTTCGCCCCACCGTCGACCC
CAATTTATAAAACTAATCCTTCCTCGTCTTCGCATCAGTACCATGGTTCG
TCCTTCCCAGGGACGGCAGAGTGCTCCAATGGGGCATACTGCTCGCCCGA
TGGTGTTGAAGGCGGCTTCGGTACACCGCGTGGGTATCAAGGCAACGGCG
GTGGCGATAGCGCTGGCTCGGAGGGTAGTGCTTCCGGTAGGCGTTTCAAT
CGCAGACCCTGTGCCGGGGGCGGGTGGGTGTGCTAA
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