mRNA_H-elongata_contig119070.1476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119070.1476.1
Unique NamemRNA_H-elongata_contig119070.1476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-20
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   10 QADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            QAD GDIR AC G+GTND  +VSIIC RTK+HLARVDQ+YHS++ MS+  QVK EC G Y+
Sbjct:  357 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYGMSVEAQVKHECFGVYK 417          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.730e-20
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   10 QADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            QAD GDIR AC G+GTND  +VSIIC RTK+HLARVDQ+YHS++ MS+  QVK EC G Y+
Sbjct:  378 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYGMSVEAQVKYECFGVYK 438          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A0A836CCJ5_9STRA (Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.430e-10
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   46 GMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            G GT+D  +V  +CSRTKEHL RVD+ YH +F+ SLA+++K E  G Y+
Sbjct:  402 GFGTDDNALVMAVCSRTKEHLVRVDRAYHRLFNKSLAQEIKSETSGHYQ 450          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: F1LDC5_ASCSU (Annexin (Fragment) n=2 Tax=Ascaris suum TaxID=6253 RepID=F1LDC5_ASCSU)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-7
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   13 ADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            ADA ++R A SG+GTN++ ++ IICSR+ E L  + + Y S F   L   VK +  G +R
Sbjct:   86 ADARELRKAISGIGTNEKVLIDIICSRSNEELIEIKRAYESEFKRLLESDVKSDTSGDFR 145          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A0A0B2UYD1_TOXCA (Annexin n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2UYD1_TOXCA)

HSP 1 Score: 51.2 bits (121), Expect = 7.610e-6
Identity = 22/60 (36.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   13 ADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            +DA ++R A SG+GTN++ ++ IICSR+ + L  + + Y   F   L   VK +  G +R
Sbjct:  510 SDARELRKAISGLGTNEKTLIDIICSRSNDELVEIKRVYEDEFKRLLECDVKSDTSGDFR 569          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A0A0K9R4I0_SPIOL (Annexin n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R4I0_SPIOL)

HSP 1 Score: 50.8 bits (120), Expect = 9.830e-6
Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   13 ADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSY 189
            ADA  +R AC G GTN++G++ IIC R       + + Y  M++ +L ++ +KE  G++
Sbjct:   14 ADAEALRKACEGWGTNEKGIIEIICHRNAAQKKLIKEAYEEMYNENLIQRFEKELSGNF 72          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: D8R2M4_SELML (Annexin n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R2M4_SELML)

HSP 1 Score: 50.8 bits (120), Expect = 9.850e-6
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1
Query:   10 QADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            + DA  IR A  G+GT D+ ++ IICSRT   L  + Q Y + +  SL K ++ +  G YR
Sbjct:   86 ERDAVLIRDAMKGLGTKDKTLIEIICSRTPSQLYYIRQAYQTKYHRSLDKDIQSDTSGDYR 146          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A0A0K8TP66_TABBR (Annexin n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TP66_TABBR)

HSP 1 Score: 50.1 bits (118), Expect = 1.860e-5
Identity = 19/63 (30.16%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    1 FQNQADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSY 189
            F    DA D+R A  G GT++ G+++++C R+      + + Y + F   L + +K EC G++
Sbjct:   15 FDPVKDAHDLRKAMKGFGTDEDGLINVLCFRSSAQRQEIQKQYKTHFGRDLIEDIKSECSGNF 77          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: UPI00065C50AA (annexin-like protein RJ4 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00065C50AA)

HSP 1 Score: 49.7 bits (117), Expect = 2.530e-5
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   13 ADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSYR 192
            ADA  +R AC G GT+++G++++IC R   H   + + Y   ++  L  + +KE  G+++
Sbjct:   14 ADAEALRKACQGWGTDEKGIINVICHRNAAHRKLIKEAYKQQYNEDLINRFEKELSGNFK 73          
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Match: A9VCX1_MONBE (Annexin n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VCX1_MONBE)

HSP 1 Score: 49.7 bits (117), Expect = 2.680e-5
Identity = 18/57 (31.58%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   19 AGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMSLAKQVKKECMGSY 189
            A +++ A  G+GT+DR ++ IIC+R    + R+   Y  ++ +SLA+ ++ +  G+Y
Sbjct:  667 ASEVQRAIRGLGTDDRSLIEIICTRDAAEMKRLKDKYQELYGVSLAEAIRSDTSGNY 723          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119070.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L407_9PHAE1.270e-2067.21Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FJE4_ECTSI1.730e-2067.21Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CCJ5_9STRA3.430e-1053.06Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
F1LDC5_ASCSU1.980e-741.67Annexin (Fragment) n=2 Tax=Ascaris suum TaxID=6253... [more]
A0A0B2UYD1_TOXCA7.610e-636.67Annexin n=1 Tax=Toxocara canis TaxID=6265 RepID=A0... [more]
A0A0K9R4I0_SPIOL9.830e-635.59Annexin n=1 Tax=Spinacia oleracea TaxID=3562 RepID... [more]
D8R2M4_SELML9.850e-639.34Annexin n=6 Tax=Selaginella moellendorffii TaxID=8... [more]
A0A0K8TP66_TABBR1.860e-530.16Annexin n=1 Tax=Tabanus bromius TaxID=304241 RepID... [more]
UPI00065C50AA2.530e-531.67annexin-like protein RJ4 n=1 Tax=Beta vulgaris sub... [more]
A9VCX1_MONBE2.680e-531.58Annexin n=1 Tax=Monosiga brevicollis TaxID=81824 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119070contigH-elongata_contig119070:873..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue6.3e-17
Seed eggNOG ortholog2880.D7FJE4
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.7827184-CDS-H-elongata_contig119070:872..10671622929696.7827184-CDS-H-elongata_contig119070:872..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119070 873..1067 -
1691679122.7114317-CDS-H-elongata_contig119070:872..10671691679122.7114317-CDS-H-elongata_contig119070:872..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119070 873..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119070.1476.1prot_H-elongata_contig119070.1476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119070 873..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119070.1476.1

>prot_H-elongata_contig119070.1476.1 ID=prot_H-elongata_contig119070.1476.1|Name=mRNA_H-elongata_contig119070.1476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
FQNQADAGDIRAACSGMGTNDRGMVSIICSRTKEHLARVDQHYHSMFSMS
LAKQVKKECMGSYR*
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mRNA from alignment at H-elongata_contig119070:873..1067-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119070.1476.1 ID=mRNA_H-elongata_contig119070.1476.1|Name=mRNA_H-elongata_contig119070.1476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig119070:873..1067- (Himanthalia elongata Himel1 dioecious)
TTTCAAAATCAGGCGGACGCCGGGGATATCCGCGCGGCCTGCTCCGGCAT GGGCACGAACGATCGCGGCATGGTCTCCATCATCTGCAGCCGGACCAAGG AACACCTGGCCCGAGTCGACCAGCACTACCACTCGATGTTCTCGATGTCC CTCGCCAAGCAGGTCAAAAAGGAATGCATGGGGAGCTACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig119070:873..1067-

>mRNA_H-elongata_contig119070.1476.1 ID=mRNA_H-elongata_contig119070.1476.1|Name=mRNA_H-elongata_contig119070.1476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig119070:873..1067- (Himanthalia elongata Himel1 dioecious)
TTTCAAAATCAGGCGGACGCCGGGGATATCCGCGCGGCCTGCTCCGGCAT
GGGCACGAACGATCGCGGCATGGTCTCCATCATCTGCAGCCGGACCAAGG
AACACCTGGCCCGAGTCGACCAGCACTACCACTCGATGTTCTCGATGTCC
CTCGCCAAGCAGGTCAAAAAGGAATGCATGGGGAGCTACAGGTGATTTCA
AAATCAGGCGGACGCCGGGGATATCCGCGCGGCCTGCTCCGGCATGGGCA
CGAACGATCGCGGCATGGTCTCCATCATCTGCAGCCGGACCAAGGAACAC
CTGGCCCGAGTCGACCAGCACTACCACTCGATGTTCTCGATGTCCCTCGC
CAAGCAGGTCAAAAAGGAATGCATGGGGAGCTACAGGTGA
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