mRNA_H-elongata_contig70950.14755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70950.14755.1
Unique NamemRNA_H-elongata_contig70950.14755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70950.14755.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 3.970e-78
Identity = 141/216 (65.28%), Postives = 168/216 (77.78%), Query Frame = 1 
Query:    1 SGVKIREHAIHAGAVFGMTDAMLGLPYRATYTTTSFVHLFFFDKKAFLKESMQSEDLNRALWRAVGVSVLRKFYGFHKLRLQELQKMVQNAEFIDLVQEGMGIATTQIEYKVEEIRAKAAFRVD-NHGGQQLSSRNXXXXXXXXXXXXX---------GRIHVNKLKSQDRGGSLAKTLSNMGLYNMD--KITDETLAEAATVLTPHSSSAQTLKV 612
            S VKI+EH +HAGAVFGMTD+MLGLP+RATYT+TSFVHLFFFD+ +FL E++ +EDLNR+LWR VGVSVLRKFYGFH LRLQELQKMVQNAEF+D++QEG+G+ TTQ EYKVE +RAKAA R   +H    LS  N                      GRIH+++LK  +RGG +AKTLSNMGLYNMD  ++TDE+LAEAAT+LTPHSSS QTLKV
Sbjct: 1141 SSVKIKEHPLHAGAVFGMTDSMLGLPFRATYTSTSFVHLFFFDRTSFLFEALANEDLNRSLWRTVGVSVLRKFYGFHCLRLQELQKMVQNAEFVDVMQEGVGVVTTQNEYKVEALRAKAASRAGLSHSNSSLSELNSAAEGAAPEVFNSAFQDSTDDDGRIHIHQLKENERGG-IAKTLSNMGLYNMDMDRMTDESLAEAATLLTPHSSSNQTLKV 1355
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BLAST of mRNA_H-elongata_contig70950.14755.1 vs. uniprot
Match: A0A835Z8G2_9STRA (Sodium/hydrogen exchanger family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.660e-39
Identity = 82/178 (46.07%), Postives = 113/178 (63.48%), Query Frame = 1 
Query:   16 REHAIHAGAVFGMTDAMLGLPYRATYTTTSFVHLFFFDKKAFLKESMQSEDLNRALWRAVGVSVLRKFYGFHKLRLQELQKMVQNAEFIDLVQEGMGIATTQIEYKVEEIRAK--AAFRVDN--HGGQQLSSRNXXXXXXXXXXXXX-GRIHVNKLKSQDRGGSLAKTLSNMGLYNMD 534
            R+  +HAGAVFGMTD MLG P+R  YTT SFVH+F+FDK   L E+ + +DLNR+LWR VGV+VLRKF GF+++RL EL K+V ++EF+DL + G+G  T+++  +VE+IRA+  A+  V    HG    S+ +              G IH+ K+     G SL + L  MGLY  D
Sbjct: 1172 RQQVLHAGAVFGMTDQMLGRPFRGAYTTASFVHVFYFDKDRLLAEAARCDDLNRSLWRTVGVTVLRKFVGFNRMRLNELHKLVYSSEFVDLSRAGVGEETSEVALRVEQIRARMTASSSVGGMRHGSISGSTGDAGTPTSAAAAAADDGAIHIKKMSRDPSGTSLKQALRQMGLYEGD 1349
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BLAST of mRNA_H-elongata_contig70950.14755.1 vs. uniprot
Match: D7FHU8_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.200e-5
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 REHAIHAGAVFGMTDAMLGLPYRATYTTTSFVHLFFFDK 132
            +E  ++AG V G+ + ++ +PYR TYTT SFVHLFFFDK
Sbjct:  210 KERLVNAGTVVGLDEQLMQVPYRCTYTTASFVHLFFFDK 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70950.14755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G372_ECTSI3.970e-7865.28Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A835Z8G2_9STRA2.660e-3946.07Sodium/hydrogen exchanger family n=1 Tax=Tribonema... [more]
D7FHU8_ECTSI3.200e-556.41Cyclic nucleotide-binding protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70950contigH-elongata_contig70950:286..3043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3.4e-69
Seed eggNOG ortholog2880.D7G372
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size615
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70950.14755.1prot_H-elongata_contig70950.14755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70950 286..3043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.4398534-CDS-H-elongata_contig70950:285..4191622931108.4398534-CDS-H-elongata_contig70950:285..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 286..419 +
1691679701.5572917-CDS-H-elongata_contig70950:285..4191691679701.5572917-CDS-H-elongata_contig70950:285..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 286..419 +
1622931108.4770975-CDS-H-elongata_contig70950:883..10821622931108.4770975-CDS-H-elongata_contig70950:883..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 884..1082 +
1691679701.5717657-CDS-H-elongata_contig70950:883..10821691679701.5717657-CDS-H-elongata_contig70950:883..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 884..1082 +
1622931108.4938767-CDS-H-elongata_contig70950:1469..15371622931108.4938767-CDS-H-elongata_contig70950:1469..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 1470..1537 +
1691679701.5825357-CDS-H-elongata_contig70950:1469..15371691679701.5825357-CDS-H-elongata_contig70950:1469..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 1470..1537 +
1622931108.512405-CDS-H-elongata_contig70950:2602..26661622931108.512405-CDS-H-elongata_contig70950:2602..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 2603..2666 +
1691679701.5929916-CDS-H-elongata_contig70950:2602..26661691679701.5929916-CDS-H-elongata_contig70950:2602..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 2603..2666 +
1622931108.5314364-CDS-H-elongata_contig70950:2893..30431622931108.5314364-CDS-H-elongata_contig70950:2893..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 2894..3043 +
1691679701.605588-CDS-H-elongata_contig70950:2893..30431691679701.605588-CDS-H-elongata_contig70950:2893..3043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70950 2894..3043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70950.14755.1

>prot_H-elongata_contig70950.14755.1 ID=prot_H-elongata_contig70950.14755.1|Name=mRNA_H-elongata_contig70950.14755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
SGVKIREHAIHAGAVFGMTDAMLGLPYRATYTTTSFVHLFFFDKKAFLKE
SMQSEDLNRALWRAVGVSVLRKFYGFHKLRLQELQKMVQNAEFIDLVQEG
MGIATTQIEYKVEEIRAKAAFRVDNHGGQQLSSRNRAAAGGSDNDDDDGR
IHVNKLKSQDRGGSLAKTLSNMGLYNMDKITDETLAEAATVLTPHSSSAQ
TLKV*
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mRNA from alignment at H-elongata_contig70950:286..3043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70950.14755.1 ID=mRNA_H-elongata_contig70950.14755.1|Name=mRNA_H-elongata_contig70950.14755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2758bp|location=Sequence derived from alignment at H-elongata_contig70950:286..3043+ (Himanthalia elongata Himel1 dioecious)
AGCGGCGTGAAGATCCGGGAACATGCCATCCACGCCGGCGCGGTCTTCGG
CATGACCGACGCCATGCTGGGCCTGCCCTACCGAGCAACCTACACCACGA
CCTCCTTCGTGCACCTGTTTTTCTTCGACAAGAAGTGAGCTGAGTCTAGT
CATCGTCCTCTTTTTGTCGTATTTTTTCGCCCCTTCACCCCAAAACGTGT
ATATATATAGGTTTTAGTATGGATCATCCGGATATGGTTACCGATCTTGC
TTGTGGTCAGCTGAACTTTTTTCTTTTTTTTTTTCTGTTCGTTCGTCCCT
TTTCGAGGAGTCAGGTTATTATTATTATTATTATTATTATTATTTATTTT
CCCCCTTTTTTCCAGTTATTGTTCCCGAAGCTTCACCCGTGAAAATAAGG
TATGTAATTGTGTATATACACACCCACAAATTCAATTATATACCCAATCT
CTCTTTATATAAGTATACTATGAATACTCGCTTTTTAAACAAAAAAATAT
GATATTGTAGTAGTAGAGTACATACCATCATAAAACTGGCCTCTTAACAT
TGTGTGCCTCCCTGTTTTTGTTTGTTTTTTGTTTTTGTTTTTTTCCAGGG
CGTTCCTGAAAGAAAGCATGCAGAGCGAAGACCTCAACCGGGCGCTGTGG
AGGGCCGTCGGTGTTAGCGTTCTCAGGAAGTTCTATGGGTTCCACAAGCT
CCGACTCCAGGAGCTACAGAAGATGGTGCAGAACGCCGAGTTCATTGACC
TAGTCCAGGAGGGAATGGGGATAGCCACCACCCAGATCGAATATAAGGTA
TGTGCGATGGTCCCCCTCCTCCTTCTCCTGATGATCCTCCTGCTGCTGCT
GCTGCTTTTGCTGCTTTTGCTCTTCGTCTTGTGTGACGTCATCACATATC
GCAGAGTAAGAATCTTCTGTCATTTCTTGGGAAGAGGGCGTTTTTTTATA
TCCTTGCTTTGCTTACGGTTGTGAATCCCCACGCTACCCTGCCATTTATC
GTTTAGCAAGTTCTTGAAGTGTTTCCAGAAAAACGGGGCGTTTTTTTTGT
GTTTTTTTTTTTTTTTTTTGGAAGGATTTGTTGATTGACACTCTTGATTT
CTTAAATCTTGGACTTGCAAGATCGCCGCCAATTGCGAACGTGCGTTTCG
TGTTTTGCCGTGCCATCGGAAAATGCCTTTCAAGGTTGAGGAGATCCGCG
CCAAGGCAGCCTTTCGCGTTGACAACCACGGTGGACAGCAATTATCCTCC
AGGTAGCAGTAGCAGCAGCAACAATCGATGATGCTATATATATACCCTGG
TAGGTAGAATATACTATATACTCTATACTCTACGAAGTATATTTCTATAC
ACTCCTATAGAAACTTCGAAAGGTTGTGGTTTCATACATCGTGGAGGCAT
TCGACAAGGGGACTGGCTGGCCCTATAAAGAGAAAATGGCTTTAGAGTGC
TTTAAAAAAAGAAAAAAAAAGAAGAGAAGATCTCTGGCGCGTGGTTAGGG
CGGGTATGAACGGGGTTACAAAAGTTTAATTCCCAGTCGATTTATATTTT
AATCAGGCTCTGATTGGACAAAGGTGAGGCGTTATTTAGCTTTCGACCAA
TCAGAGCCCGATTTTATTTTAAATCGGCTGGAAATTTTATTTTTTGTATT
TTCGATAAAAGACCCGGCCCTTATATCGTGATATAAAGAGTTTAACTAAA
AACCAGAATCCACTGCTAAAGGTCCTCTCATTCGCACCAATCTCTCTCTC
TTTCTTTCTAACAGACACACACTACTACATATATAGATATATCATTTTAA
GTGGGGGGTGGAGTTAAGATTGACCATCCACCATTCTTTTAGGCACTGTT
AGATTTTTTTTCTCAAAACCGGCACTGTGTGGTTTTTGTCCGGCACTGGT
TTGGTACTGGTTCGGCACTGTTAGATTTTTTTTCTCAAAACCGGCACTGT
GTGGTTTTTGTCCGGCACTGGTTTGGCACTGTGAGCATTCTCTGGTTACG
TGAGCAGCCCTGATTCTTTTAGGACTTTCCCGCTGAAATGTGTCTGATAA
TGAACCTTGGTATGTGTAGCAAAAACCCAAGGTTAGTGACTTAAAGCGTA
GTCTGGCCGGCAAAAAAAAGTCCGGCATGTCTATTTCTCCGGTTGTTGTT
CCGGCATATTATTATACATATTGTAATTAGACCTGGTATTTTCCTATTGT
TGTCGCATTGGCATATTTTATCAAATTATCTAATTATCAATCTTCGCGTA
ATTATTCACCCCCCCCCCCCCCCCCCCCCACCTATTATTAAAAAAACAAC
CCACCCCCCACAAGCAGAAACCGAGCCGCCGCCGGGGGTAGTGACAATGA
TGATGACGATGGGCGTATTCACGTCAACAAGGTGACTGTCTACCGTGCCT
GATTTTGACGAGCAGGGGTTTCATAGTGTTTTTGTGGCTAGGGAGAAGAG
GGGAGAAAGGACGAGGTTTGTAGGTCTTGGCTGGTTTCACCCTTCTTCAT
CGTGGAGGGTGGTTGCAATCGTTTTTAGGAGACATGCCATGTCCCATATC
TCTGACCCTTGGTACTGTACAACCTATCCTGTTGCGGATCATTCGCCGGT
GTTGACAGCTCAAGTCTCAGGACAGGGGAGGTTCTCTGGCGAAGACCCTT
AGCAACATGGGTCTCTATAACATGGACAAGATCACGGATGAGACCCTTGC
CGAGGCGGCCACGGTGCTGACGCCGCACTCCAGCTCCGCACAGACGCTCA
AGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig70950:286..3043+

>mRNA_H-elongata_contig70950.14755.1 ID=mRNA_H-elongata_contig70950.14755.1|Name=mRNA_H-elongata_contig70950.14755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig70950:286..3043+ (Himanthalia elongata Himel1 dioecious)
AGCGGCGTGAAGATCCGGGAACATGCCATCCACGCCGGCGCGGTCTTCGG
CATGACCGACGCCATGCTGGGCCTGCCCTACCGAGCAACCTACACCACGA
CCTCCTTCGTGCACCTGTTTTTCTTCGACAAGAAAGCGGCGTGAAGATCC
GGGAACATGCCATCCACGCCGGCGCGGTCTTCGGCATGACCGACGCCATG
CTGGGCCTGCCCTACCGAGCAACCTACACCACGACCTCCTTCGTGCACCT
GTTTTTCTTCGACAAGAAGGCGTTCCTGAAAGAAAGCATGCAGAGCGAAG
ACCTCAACCGGGCGCTGTGGAGGGCCGTCGGTGTTAGCGTTCTCAGGAAG
TTCTATGGGTTCCACAAGCTCCGACTCCAGGAGCTACAGAAGATGGTGCA
GAACGCCGAGTTCATTGACCTAGTCCAGGAGGGAATGGGGATAGCCACCA
CCCAGATCGAATATAAGGGCGTTCCTGAAAGAAAGCATGCAGAGCGAAGA
CCTCAACCGGGCGCTGTGGAGGGCCGTCGGTGTTAGCGTTCTCAGGAAGT
TCTATGGGTTCCACAAGCTCCGACTCCAGGAGCTACAGAAGATGGTGCAG
AACGCCGAGTTCATTGACCTAGTCCAGGAGGGAATGGGGATAGCCACCAC
CCAGATCGAATATAAGGTTGAGGAGATCCGCGCCAAGGCAGCCTTTCGCG
TTGACAACCACGGTGGACAGCAATTATCCTCCAGGTTGAGGAGATCCGCG
CCAAGGCAGCCTTTCGCGTTGACAACCACGGTGGACAGCAATTATCCTCC
AGAAACCGAGCCGCCGCCGGGGGTAGTGACAATGATGATGACGATGGGCG
TATTCACGTCAACAAGAAACCGAGCCGCCGCCGGGGGTAGTGACAATGAT
GATGACGATGGGCGTATTCACGTCAACAAGCTCAAGTCTCAGGACAGGGG
AGGTTCTCTGGCGAAGACCCTTAGCAACATGGGTCTCTATAACATGGACA
AGATCACGGATGAGACCCTTGCCGAGGCGGCCACGGTGCTGACGCCGCAC
TCCAGCTCCGCACAGACGCTCAAGGTATGACTCAAGTCTCAGGACAGGGG
AGGTTCTCTGGCGAAGACCCTTAGCAACATGGGTCTCTATAACATGGACA
AGATCACGGATGAGACCCTTGCCGAGGCGGCCACGGTGCTGACGCCGCAC
TCCAGCTCCGCACAGACGCTCAAGGTATGA
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