mRNA_H-elongata_contig70929.14750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70929.14750.1
Unique NamemRNA_H-elongata_contig70929.14750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Match: A0A6H5LDY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 5.040e-62
Identity = 156/366 (42.62%), Postives = 194/366 (53.01%), Query Frame = 1 
Query:   25 VPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTVGTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRPMKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRGIGQGSRRFGENHDSKRDAW---------------------AWTWGGGDLGDYYTTANSDLRDGDDQRSVVSVGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSS-----NESSAMSFRDEADRGAGGGDC------------------VAFEVMSNASSELLAPPSSGKGFAMPRR-VLSIHVLGRSTPLQLWFPDEAEATIWQGMLTKLAWKEQGYL 987
            VPFW+RET L+ YQK YRIVD+G DSYT ME+SIMTSCVCTVGT+Y DVAAQ+FTAK+VL  EEYRLFQ++V+RGAEV KAA KSG+R   PMK+RLWF+RGALCLT+KR + +   + DH+FY+SKVK CL+A   AA R  G  SRR   NH S                          A   G G+ G   T+A S         S+     P  +PG                 AG A               E++A    DEADRGA                        A     +   +  +   +G+ ++  +  V+SIH  GR+  L LWF  E EA  WQG+LTKL+WKEQGYL
Sbjct:  547 VPFWFRETNLRPYQKAYRIVDDG-DSYTPMERSIMTSCVCTVGTKYADVAAQLFTAKEVLFPEEYRLFQVLVKRGAEVPKAAPKSGRRLSHPMKLRLWFNRGALCLTAKRSKPDGTASKDHSFYLSKVKTCLVAV-TAAVRDSGGSSRRGSRNHCSSXXXXXGSGHSDAAITPRLPSDASDNASPAGRGNKGGLTTSATSSPLALSLSSSLPFSVPPKHLPG----------------AAGTAXXXXXXXXXXXXXLEENTA---HDEADRGAXXXXXXXXXXXXXXXXXXXXXXXAAKGQRPDGDGDASSVVKAGEDWSSQQACVMSIHFFGRTITLDLWFASETEAVEWQGLLTKLSWKEQGYL 891
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BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Match: D7FIV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.450e-47
Identity = 127/321 (39.56%), Postives = 150/321 (46.73%), Query Frame = 1 
Query:   25 VPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTVGTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRPMKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRGIGQGSRRFGENHDSKRDAWAWTWGGGDLGDYYTTANSDLRDGDDQRSVVSVGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSSNESSAMSFRDEADRGAGGGDCVAFEVMSNASSELLAPPSSGKGFAMPRRVLSIHVLGRSTPLQLWFPDEAEATIWQGMLTKLAWKEQGYL 987
            VPFW+RET L+ YQK YRIVD+G DSYT ME+SIMTSCVCTVGT+Y DVAAQ+FTAKDVL+ EEYRLFQ++V+RGAEV KAA KSG++   PMK+RLWF+RGALCLT+K                         PG A     G  SRR     ++     A    GG                                        G+ RAGE+  +  A                             CV                            +SIH  GR+  L LWF  E EA  WQGMLTKL+WKEQGYL
Sbjct:  426 VPFWFRETNLRPYQKAYRIVDDG-DSYTPMERSIMTSCVCTVGTKYADVAAQLFTAKDVLSPEEYRLFQVLVKRGAEVPKAAPKSGRKLSHPMKLRLWFNRGALCLTAKH-----------------------LPGAAGAAAAG--SRRGSSLEENTAHDEADRGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVVRAGEDWSSQHA-----------------------------CV----------------------------MSIHFFGRTITLDLWFASETEAVEWQGMLTKLSWKEQGYL 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDY4_9PHAE5.040e-6242.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV6_ECTSI1.450e-4739.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70929contigH-elongata_contig70929:99..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size987
Cds size987
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70929.14750.1prot_H-elongata_contig70929.14750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70929 99..2445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.8657467-CDS-H-elongata_contig70929:98..2931622931107.8657467-CDS-H-elongata_contig70929:98..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 99..293 +
1691679701.314759-CDS-H-elongata_contig70929:98..2931691679701.314759-CDS-H-elongata_contig70929:98..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 99..293 +
1622931107.8828268-CDS-H-elongata_contig70929:724..8801622931107.8828268-CDS-H-elongata_contig70929:724..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 725..880 +
1691679701.3243408-CDS-H-elongata_contig70929:724..8801691679701.3243408-CDS-H-elongata_contig70929:724..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 725..880 +
1622931107.8977044-CDS-H-elongata_contig70929:1391..14781622931107.8977044-CDS-H-elongata_contig70929:1391..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 1392..1478 +
1691679701.3339884-CDS-H-elongata_contig70929:1391..14781691679701.3339884-CDS-H-elongata_contig70929:1391..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 1392..1478 +
1622931107.9157543-CDS-H-elongata_contig70929:1556..20631622931107.9157543-CDS-H-elongata_contig70929:1556..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 1557..2063 +
1691679701.3456473-CDS-H-elongata_contig70929:1556..20631691679701.3456473-CDS-H-elongata_contig70929:1556..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 1557..2063 +
1622931107.9349332-CDS-H-elongata_contig70929:2403..24451622931107.9349332-CDS-H-elongata_contig70929:2403..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 2404..2445 +
1691679701.353861-CDS-H-elongata_contig70929:2403..24451691679701.353861-CDS-H-elongata_contig70929:2403..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70929 2404..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70929.14750.1

>prot_H-elongata_contig70929.14750.1 ID=prot_H-elongata_contig70929.14750.1|Name=mRNA_H-elongata_contig70929.14750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
MLNRATQPVPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTV
GTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRP
MKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRG
IGQGSRRFGENHDSKRDAWAWTWGGGDLGDYYTTANSDLRDGDDQRSVVS
VGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSSNESSAMSFRDE
ADRGAGGGDCVAFEVMSNASSELLAPPSSGKGFAMPRRVLSIHVLGRSTP
LQLWFPDEAEATIWQGMLTKLAWKEQGYL
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mRNA from alignment at H-elongata_contig70929:99..2445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70929.14750.1 ID=mRNA_H-elongata_contig70929.14750.1|Name=mRNA_H-elongata_contig70929.14750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2347bp|location=Sequence derived from alignment at H-elongata_contig70929:99..2445+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAACCGCGCGACGCAACCAGTGCCGTTTTGGTATCGCGAGACACG
CCTCCAGCGGTATCAGAAAACTTACCGCATCGTGGACAACGGGCCCGACT
CGTACACTCTCATGGAGAAAAGCATCATGACCTCCTGCGTGTGCACCGTG
GGCACGCGGTATCCAGACGTAGCAGCACAGATCTTCACGGCAAAGGTAGG
GGATTTCCTTTGTGTGTGGTATGCGTGTGCGGCGCTTATGCGTTCTCGGG
GTAGAGAGTAGTCGAGCCCGCTGAATATGCCAAAATATGTTTACCAGTTT
CCAATGTCCTAAATCTGACGTCATGCTTGTGAAACGCAGCCTGGCCGGCC
AAAAGCCGGTATATCTTATCGTTCCGTCCCGGTATTGTTGGGATACAGCG
TGCGTGATATATGCTCTCTAGGATGTGGCATATGTTAAACATGAGTATCC
CCCCCACCACATATCACCGCTTTCCTCTCGCTTTTGACCTCTTATTTGGG
TTATTTTTTTCCCCCCCCCCCCCCTTCACCCCCCATATATTTTGAACTCT
TTTTCCATCCTCTTCAACCCTCTTTTTTCTTCGTATTTTTAATTCAACGC
CTCGGTTGATCCATCTGTTGATTCAGGACGTGTTGACTTTAGAGGAGTAC
CGGCTATTCCAGATGGTGGTCAGACGCGGCGCCGAGGTGCACAAGGCGGC
ATCGAAGTCTGGCAAAAGAGCGCCGCGTCCGATGAAGATCCGGCTGTGGT
TTGACCGAGGAGCCCTTTGTCTTACGTCAAAGGTAAACAGAAATGGGAGT
TTGTAGCGACACGGAGGCGTTTATTCGTTGGGGGGGGGCAGGCCAAGCTA
GTGGGAAACCCGCCGGCGATTCAGTCAGTAGCACGGATTACAGGGGGGGG
GTCAATCGTGATCGTCTCGAACGTTAGATTATATTGTGATTGTTGAAGAC
CGTGGTTAGGGGAAGGCGGTCGTCGAGAGACCTCTAGGATGCGGTAGCGC
TACACCAATTTTGGCGACGACGCGCTACTTCGTTTTCGTGAAATAGAAAC
CAAATAACATAAATGGATAGAATAACGTGGCCCCAGCCGCTAGAGATACA
CGAGCCACGAATCAACGCTACCTGGGAGGGTGTAAGTTCCCGTAGCTCGC
AACTCTACCGCGTCCACAACTACACACCACTCTCTCTGCTTGCAGTCTCC
CCCTCCCCTCAATAAGAAGCTATCGGCTCTTCCTTTTTTGCCTTGCCTTG
ACTTGACTGCCTCGTCGGCTTACGCGGTGGTCGTGTTCCGCAGCGCGATA
GGGCGAACCGAGGGTATACCGTGGACCACACATTTTACATGTCCAAGGTC
AAGTTTTGTCTGCTCGCGCCGGGGCGCGCGGTACAGAAAGCAGTACCGGC
AGCAGCAGGAGCAGCGGCAGCGGTTGGGAGAGTGGCTGGGACGGAGACGG
GGGTCGAGGCGGGAAGAGGCATAGGACAGGGCAGTAGACGGTTCGGGGAG
AATCACGACAGCAAGAGAGACGCGTGGGCGTGGACTTGGGGGGGGGGTGA
CCTCGGTGACTATTACACGACCGCCAACAGCGACCTCCGTGACGGCGATG
ATCAAAGGAGCGTTGTCAGTGTTGGAGAGCCGTCGAAGATGCCCGGGGAA
GAGTCCCACCATGGTGGTGGATTGGAGAGGGCGGGCGAGGAAGGGCTCGC
TGGGGTGGCGAAATGCAGTCGCGACAGCGTGAGCAGCAACGAGAGCTCGG
CGATGAGTTTCCGCGACGAGGCGGATCGTGGGGCGGGGGGCGGGGACTGT
GTTGCCTTTGAGGTTATGAGCAATGCGTCGTCCGAGCTTTTGGCGCCGCC
GTCCAGTGGAAAGGGTTTCGCCATGCCGCGGCGTGTGCTGTCTATTCACG
TCTTGGGTCGGTCGACTCCACTGCAGCTGTGGTTCCCAGATGAGGCAGAA
GCCACAATATGGCAGGTACGACCTCGAGATCTCGAGACATTGCGGTGGGG
AGCGAAGCTAGAGTAAACAAGAGTATATGTCATATAGTTTGATTTAAAGC
TGTATGCTGACGTTGTCTCCACCGCCACGACATCAGCCAAGCTTTTGAAA
AGCTAGCTAAGATAATGTCAACGCCAACGGTCCGATTTGTCAACGCTTCT
TCGTCCGTCCCCCGTCCTCCCCCCCACCCGCCCCCTACCTGCCCGTCAGT
TTGCTGAGAGCTTTGTGTGGTGACGCTCTGTTTCTCCCCCCCTCTCCCCA
CGTGGAATTACGCCTTCTGTTTCGCTTCGTTACCAATGTGCGTGGCGCGC
GCCAGGGAATGCTGACAAAGCTTGCCTGGAAAGAGCAAGGGTATCTT
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Coding sequence (CDS) from alignment at H-elongata_contig70929:99..2445+

>mRNA_H-elongata_contig70929.14750.1 ID=mRNA_H-elongata_contig70929.14750.1|Name=mRNA_H-elongata_contig70929.14750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig70929:99..2445+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAACCGCGCGACGCAACCAGTGCCGTTTTGGTATCGCGAGACACG
CCTCCAGCGGTATCAGAAAACTTACCGCATCGTGGACAACGGGCCCGACT
CGTACACTCTCATGGAGAAAAGCATCATGACCTCCTGCGTGTGCACCGTG
GGCACGCGGTATCCAGACGTAGCAGCACAGATCTTCACGGCAAAGATGTT
AAACCGCGCGACGCAACCAGTGCCGTTTTGGTATCGCGAGACACGCCTCC
AGCGGTATCAGAAAACTTACCGCATCGTGGACAACGGGCCCGACTCGTAC
ACTCTCATGGAGAAAAGCATCATGACCTCCTGCGTGTGCACCGTGGGCAC
GCGGTATCCAGACGTAGCAGCACAGATCTTCACGGCAAAGGACGTGTTGA
CTTTAGAGGAGTACCGGCTATTCCAGATGGTGGTCAGACGCGGCGCCGAG
GTGCACAAGGCGGCATCGAAGTCTGGCAAAAGAGCGCCGCGTCCGATGAA
GATCCGGCTGTGGTTTGACCGAGGAGCCCTTTGTCTTACGTCAAAGGACG
TGTTGACTTTAGAGGAGTACCGGCTATTCCAGATGGTGGTCAGACGCGGC
GCCGAGGTGCACAAGGCGGCATCGAAGTCTGGCAAAAGAGCGCCGCGTCC
GATGAAGATCCGGCTGTGGTTTGACCGAGGAGCCCTTTGTCTTACGTCAA
AGCGCGATAGGGCGAACCGAGGGTATACCGTGGACCACACATTTTACATG
TCCAAGGTCAAGTTTTGTCTGCTCGCGCCGGGGCGCGCGCGCGATAGGGC
GAACCGAGGGTATACCGTGGACCACACATTTTACATGTCCAAGGTCAAGT
TTTGTCTGCTCGCGCCGGGGCGCGCGGCGGGAAGAGGCATAGGACAGGGC
AGTAGACGGTTCGGGGAGAATCACGACAGCAAGAGAGACGCGTGGGCGTG
GACTTGGGGGGGGGGTGACCTCGGTGACTATTACACGACCGCCAACAGCG
ACCTCCGTGACGGCGATGATCAAAGGAGCGTTGTCAGTGTTGGAGAGCCG
TCGAAGATGCCCGGGGAAGAGTCCCACCATGGTGGTGGATTGGAGAGGGC
GGGCGAGGAAGGGCTCGCTGGGGTGGCGAAATGCAGTCGCGACAGCGTGA
GCAGCAACGAGAGCTCGGCGATGAGTTTCCGCGACGAGGCGGATCGTGGG
GCGGGGGGCGGGGACTGTGTTGCCTTTGAGGTTATGAGCAATGCGTCGTC
CGAGCTTTTGGCGCCGCCGTCCAGTGGAAAGGGTTTCGCCATGCCGCGGC
GTGTGCTGTCTATTCACGTCTTGGGTCGGTCGACTCCACTGCAGCTGTGG
TTCCCAGATGAGGCAGAAGCCACAATATGGCAGGCGGGAAGAGGCATAGG
ACAGGGCAGTAGACGGTTCGGGGAGAATCACGACAGCAAGAGAGACGCGT
GGGCGTGGACTTGGGGGGGGGGTGACCTCGGTGACTATTACACGACCGCC
AACAGCGACCTCCGTGACGGCGATGATCAAAGGAGCGTTGTCAGTGTTGG
AGAGCCGTCGAAGATGCCCGGGGAAGAGTCCCACCATGGTGGTGGATTGG
AGAGGGCGGGCGAGGAAGGGCTCGCTGGGGTGGCGAAATGCAGTCGCGAC
AGCGTGAGCAGCAACGAGAGCTCGGCGATGAGTTTCCGCGACGAGGCGGA
TCGTGGGGCGGGGGGCGGGGACTGTGTTGCCTTTGAGGTTATGAGCAATG
CGTCGTCCGAGCTTTTGGCGCCGCCGTCCAGTGGAAAGGGTTTCGCCATG
CCGCGGCGTGTGCTGTCTATTCACGTCTTGGGTCGGTCGACTCCACTGCA
GCTGTGGTTCCCAGATGAGGCAGAAGCCACAATATGGCAGGGAATGCTGA
CAAAGCTTGCCTGGAAAGAGCAAGGGTATCTTGGAATGCTGACAAAGCTT
GCCTGGAAAGAGCAAGGGTATCTT
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