mRNA_H-elongata_contig70905.14747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70905.14747.1
Unique NamemRNA_H-elongata_contig70905.14747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70905.14747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70905contigH-elongata_contig70905:1519..2667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size257
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70905.14747.1prot_H-elongata_contig70905.14747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70905 1790..2616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.5278873-UTR-H-elongata_contig70905:1518..15461622931107.5278873-UTR-H-elongata_contig70905:1518..1546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 1519..1546 -
1691679701.192553-UTR-H-elongata_contig70905:1518..15461691679701.192553-UTR-H-elongata_contig70905:1518..1546Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 1519..1546 -
1622931107.5551167-UTR-H-elongata_contig70905:1752..17891622931107.5551167-UTR-H-elongata_contig70905:1752..1789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 1753..1789 -
1691679701.2039847-UTR-H-elongata_contig70905:1752..17891691679701.2039847-UTR-H-elongata_contig70905:1752..1789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 1753..1789 -
1622931107.6207497-UTR-H-elongata_contig70905:2616..26671622931107.6207497-UTR-H-elongata_contig70905:2616..2667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 2617..2667 -
1691679701.251734-UTR-H-elongata_contig70905:2616..26671691679701.251734-UTR-H-elongata_contig70905:2616..2667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70905 2617..2667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.5688763-CDS-H-elongata_contig70905:1789..18351622931107.5688763-CDS-H-elongata_contig70905:1789..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 1790..1835 -
1691679701.2173567-CDS-H-elongata_contig70905:1789..18351691679701.2173567-CDS-H-elongata_contig70905:1789..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 1790..1835 -
1622931107.5821557-CDS-H-elongata_contig70905:2062..21471622931107.5821557-CDS-H-elongata_contig70905:2062..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 2063..2147 -
1691679701.2302625-CDS-H-elongata_contig70905:2062..21471691679701.2302625-CDS-H-elongata_contig70905:2062..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 2063..2147 -
1622931107.5983095-CDS-H-elongata_contig70905:2606..26161622931107.5983095-CDS-H-elongata_contig70905:2606..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 2607..2616 -
1691679701.2394857-CDS-H-elongata_contig70905:2606..26161691679701.2394857-CDS-H-elongata_contig70905:2606..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70905 2607..2616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70905.14747.1

>prot_H-elongata_contig70905.14747.1 ID=prot_H-elongata_contig70905.14747.1|Name=mRNA_H-elongata_contig70905.14747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MTKGSTAYTWSGRPGHSTVRETRERDKEPLYRCKVASGGRLTCNGD*
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mRNA from alignment at H-elongata_contig70905:1519..2667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70905.14747.1 ID=mRNA_H-elongata_contig70905.14747.1|Name=mRNA_H-elongata_contig70905.14747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig70905:1519..2667- (Himanthalia elongata Himel1 dioecious)
AGTCCGAGCACTGCTTGTACCACCAGAAGACACAAACTTCGAGGCATCTT
CATGACGAAAGGTAAACAATATTCAAAACATCCAAGTCTAAGAACTTCTT
AAAATAAACCGACAAAAAAAACAAACCCGGACGGCAATTCTTGCAGCATG
ACCACGTCATATATTGCTTAACCATGCCAAACGCTCTCAACGAAGGCTAG
CGATGAATGTCAGCCTCAATTCGTGCAGAATATATGCCATTTTGCTTTAG
ACTCACTCTTTCTCCATTGCGTGTCGCTTTTGTCTTCCTTTCGGGCCATA
GGTTGAAGTTTCAGTCGAATGAACTCTTTCAAGCAATATTCACTAACAAA
ACCTACGGATCATTTCTCACCATTTCCGAGATTAATAGGAGGCTGGAAAT
TGAGCCCGCTGTGATGCAAAGAGTCCTGCTCCACAGAGCCGCAAACGATA
AATTCTTGCGTGCGGTTTGGTGAGCAAATGATATTTGACAAGCACAATTA
ACAACGGTTCTACCTCTAAGGTTCGACTGCATACACCTGGTCTGGCCGGC
CTGGGCATTCGACAGTACGTGAAACTCGTGAACGCGACAAAGAACCCCTC
TATCGGTGAGTCTGACTCTGGTTCATATATCACCTACATGGACACTAGTC
CGTGTCGGCCCTAATGATGTTGTCTCAGAATGCGACAATCCCGCATTAAA
ACTGGTGTGGTGCTGCGCTACGTTTGAATTTCGACAAACCCCTGTTGGCC
CGACCCGTACCTACCCGTACCTACCTGGTGGGCGCTCGTACTGAACAACT
GACCATTTCATCCACGCCTTGATCCGCCTCAGGTGCAAAGTCGCCAGCGG
AGGACGCCTGACTTGTAACGGTGACTGACTGTCTTCCATCGTTGGTGGAC
GATTTGCTGGAGTTGGTGAGACCATGGGGAAGAAAGTATTCTGCGGAAGT
TGTACCGCTGACGTCAAACCAGGCGGATATAGCTTTTTGCGCTTCGACTC
TGAAGCCGATTCTAGTTTACTCCCGGATTCCCCCTGTAAGAGCGACTAAG
GGTCAGCTTCGAGTGAAACATTTGTGGCAAAATACACGTCGGTGAGTCCC
TCCCAACGCAAATATGGACAGGAGCGATGTGGTGCAGTGACGACGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig70905:1519..2667-

>mRNA_H-elongata_contig70905.14747.1 ID=mRNA_H-elongata_contig70905.14747.1|Name=mRNA_H-elongata_contig70905.14747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig70905:1519..2667- (Himanthalia elongata Himel1 dioecious)
ATGACGAAAGATGACGAAAGGTTCGACTGCATACACCTGGTCTGGCCGGC
CTGGGCATTCGACAGTACGTGAAACTCGTGAACGCGACAAAGAACCCCTC
TATCGGTTCGACTGCATACACCTGGTCTGGCCGGCCTGGGCATTCGACAG
TACGTGAAACTCGTGAACGCGACAAAGAACCCCTCTATCGGTGCAAAGTC
GCCAGCGGAGGACGCCTGACTTGTAACGGTGACTGAGTGCAAAGTCGCCA
GCGGAGGACGCCTGACTTGTAACGGTGACTGA
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