mRNA_H-elongata_contig7083.14743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7083.14743.1
Unique NamemRNA_H-elongata_contig7083.14743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: D7FXU4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU4_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 1.440e-98
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 1 
Query:    1 KEEGVTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQG---GDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRKKKGARLEIREHGVLGIYVKGLQ 543
            KEE VTNIKVAVRCRP S+SE SR EQSCFRIE+GTACLENPAN S+I RFGFDL+YGGD++Q++VWKDVGVPA+EKAFAGFNTTIFAYGQTGSGKTFSMQG   G G+GAGIIPRMNE+LF R VAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRK+KGA LEIREHGVLGIYVKGLQ
Sbjct:   31 KEESVTNIKVAVRCRPFSTSERSRGEQSCFRIEHGTACLENPANASDIQRFGFDLIYGGDSKQISVWKDVGVPAMEKAFAGFNTTIFAYGQTGSGKTFSMQGVGGGSGEGAGIIPRMNEELFAR-VAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRKRKGAGLEIREHGVLGIYVKGLQ 213
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A835YLR0_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR0_9STRA)

HSP 1 Score: 232 bits (592), Expect = 8.500e-73
Identity = 117/181 (64.64%), Postives = 137/181 (75.69%), Query Frame = 1 
Query:   13 VTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQG----GDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRKKKGARLEIREHGVLGIYVKGLQ 543
            V NI+VA+RCR  +  E    ++  F +EN   CL NP NP++++RFGFD ++G + QQ  +W  VG PAL+KAFAGFNTTIFAYGQTGSGKTFSMQG     DG+ AGIIPRMNE LF R V  E  A+ +  FLVTCSYFEIYNEV+YDLLDP+NRK KGA LEIREH VLGIYVKGLQ
Sbjct:    5 VENIRVAIRCRGFNEKERKAGDKCIFSVENEGVCLVNPENPTDVHRFGFDHVFGPEAQQHELWDQVGKPALDKAFAGFNTTIFAYGQTGSGKTFSMQGVQGGADGELAGIIPRMNEALFAR-VGAETAANPDIHFLVTCSYFEIYNEVVYDLLDPDNRKNKGAGLEIREHTVLGIYVKGLQ 184
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A2D4BVI2_PYTIN (Kinesin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVI2_PYTIN)

HSP 1 Score: 212 bits (540), Expect = 6.130e-66
Identity = 111/185 (60.00%), Postives = 134/185 (72.43%), Query Frame = 1 
Query:    1 KEEGVTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQG--GDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDP--NNRKKKGARLEIREHGVLGIYVKGLQ 543
            KE    NI+VAVRCRPM+  EL     SCF+ ENG A L N  NPSE + FGFD +YG DT Q  V+ D+G P L++AF G+N TIFAYGQTGSGKTFSM G  G+ +  G+IPRMN+ +F  RV +E+  D NK+FLV CS+FEIYNE+IYDLLD   N++K KG  LEI+EH VLGIYVK LQ
Sbjct:    8 KENEAENIRVAVRCRPMNERELREQAVSCFQAENGNAVLTNLENPSERHEFGFDHVYGIDTPQFRVFDDIGAPILDRAFGGYNGTIFAYGQTGSGKTFSMTGVRGNEELEGLIPRMNKAIF-ERVKKEKTEDPNKLFLVECSFFEIYNEIIYDLLDSSGNSKKNKGG-LEIKEHAVLGIYVKDLQ 190
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A6A4ZTJ1_9STRA (Kinesin-like protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZTJ1_9STRA)

HSP 1 Score: 213 bits (543), Expect = 6.640e-66
Identity = 109/178 (61.24%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:   19 NIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQGGDGDGA--GIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRK-KKGARLEIREHGVLGIYVKGLQ 543
            NI+VAVRCRPMS  E+    QSCF  +NG A L NP N  E++ FGFDL+YG DT+Q  V++D G P LE+AF G+N TIFAYGQTGSGKTFSM G  G+ A  G+IPRMN+ LF  ++  E+  D NK+FLV CS+FEIYNE+IYDLLD ++ K KK   LEI+EH VLGIYVK LQ
Sbjct:    7 NIRVAVRCRPMSEKEIREQAQSCFVCKNGNAVLTNPENKDEVHEFGFDLVYGIDTEQRCVYEDFGRPVLERAFGGYNGTIFAYGQTGSGKTFSMTGFAGNEAMEGLIPRMNKALF-EKIQVEKANDPNKLFLVECSFFEIYNEIIYDLLDSSSAKDKKNKGLEIKEHSVLGIYVKDLQ 183
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: K3X8T0_GLOUD (Kinesin-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8T0_GLOUD)

HSP 1 Score: 204 bits (518), Expect = 8.110e-60
Identity = 106/184 (57.61%), Postives = 132/184 (71.74%), Query Frame = 1 
Query:    4 EEGVTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQGGDGDGA--GIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDP--NNRKKKGARLEIREHGVLGIYVKGLQ 543
            E+   NI+VAVRCRPM+  E+     SCF  ENG A L N  N SE + FG+D +YG D+ Q  V++D+GVP L++AF G+N TIFAYGQTGSGKTFSM G  G+ +  G+IPRMN+ +F  R+  E+  D NK+FLV CS+FEIYNE+IYDLLD   N +K KG  LEI+EH VLGIYVK LQ
Sbjct:    6 EKEAENIRVAVRCRPMNEREIREQAVSCFTSENGIAVLTNLENSSEKHEFGYDFVYGCDSLQETVFQDIGVPILDRAFGGYNGTIFAYGQTGSGKTFSMSGVSGNESLEGLIPRMNKTIF-ERIKVEKGQDPNKLFLVECSFFEIYNEIIYDLLDSSGNGKKNKGG-LEIKEHSVLGIYVKDLQ 187
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A6G0X564_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X564_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.060e-59
Identity = 107/178 (60.11%), Postives = 129/178 (72.47%), Query Frame = 1 
Query:   19 NIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQGGDGDGA--GIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRK-KKGARLEIREHGVLGIYVKGLQ 543
            NI+VAVRCRPMS  EL    +SCF   NG A L NP N  E++ FGFD +YG +T+Q  V++D G P LE+AF G+N TIFAYGQTGSGKTFSM G +G+    G+IPRMN+ LF  ++  E+  D NK+FLV CS+FEIYNE+IYDLLD N  K KK   LEI+EH VLGIYVK LQ
Sbjct:    7 NIRVAVRCRPMSEKELREQAESCFVCRNGNAVLTNPDNKDEVHEFGFDFVYGINTEQRVVFEDFGRPVLERAFGGYNGTIFAYGQTGSGKTFSMTGVNGNEVLEGLIPRMNKSLF-EKIQTEKANDPNKLFLVECSFFEIYNEIIYDLLDSNPSKDKKNKGLEIKEHSVLGIYVKDLQ 183
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A8K1CSN6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSN6_PYTOL)

HSP 1 Score: 207 bits (528), Expect = 9.220e-59
Identity = 109/185 (58.92%), Postives = 132/185 (71.35%), Query Frame = 1 
Query:    1 KEEGVTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQG--GDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDP--NNRKKKGARLEIREHGVLGIYVKGLQ 543
            KE    NI+VAVRCRPM+  EL     SCF  E+G A L N  NPSE + FGFD +YG DT Q  V+ D+GVP L++AF G+N TIFAYGQTGSGKTFSM G  G  +  G+IPRMN  +F  R++ E+  + NK+FLV CS+FEIYNE+IYDLLD   N++K KG  LEI+EH VLGIYVK LQ
Sbjct:    5 KENEAENIRVAVRCRPMNDRELREQAVSCFVAEHGNAVLTNLENPSERHEFGFDHVYGCDTPQFQVFNDIGVPILDRAFGGYNGTIFAYGQTGSGKTFSMSGVRGKEELEGLIPRMNRAIF-ERISAEKAENPNKLFLVECSFFEIYNEIIYDLLDASGNSKKNKGG-LEIKEHAVLGIYVKDLQ 187
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A485KLX7_9STRA (Aste57867_8999 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLX7_9STRA)

HSP 1 Score: 207 bits (528), Expect = 9.240e-59
Identity = 111/194 (57.22%), Postives = 130/194 (67.01%), Query Frame = 1 
Query:   19 NIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQGGDGDGA--GIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLD-----------------PNNRKKKGARLEIREHGVLGIYVKGLQ 543
            NI+VAVRCRPMS  E+    QSCF  +NG A L NP N  E++ FGFD +YG DT+Q  V++D G P LE+AF G+N TIFAYGQTGSGKTFSM G  G  A  G+IPRMN+ LF  +V  E+E D NK+FLV CS+FEIYNE+IYDLLD                 P   K KG  LEI+EH VLGIYVK LQ
Sbjct:    7 NIRVAVRCRPMSEKEIREQAQSCFVCKNGNAVLTNPENKDEVHEFGFDFVYGIDTEQRLVYEDFGRPVLERAFGGYNGTIFAYGQTGSGKTFSMTGIHGHDALEGLIPRMNKALF-EKVQAEKEMDPNKLFLVECSFFEIYNEIIYDLLDSRSVVRVSVVVVNLSNSPRGNKNKG--LEIKEHSVLGIYVKDLQ 197
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A2P4WVH6_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVH6_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.920e-58
Identity = 104/186 (55.91%), Postives = 133/186 (71.51%), Query Frame = 1 
Query:    4 EEGVTNIKVAVRCRPMSSSELSRAEQSCFRI-ENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQGGDGDGA---GIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDP--NNRKKKGARLEIREHGVLGIYVKGLQ 543
            E+   NI+VAVRCRPM+  E      SCF    +G+A L N  NP+E + FGFD +YG D++Q +V++D+G+P L++AFAG+N TIFAYGQTGSGK+FSM G  G      G+IPR+N  +F  RVA+ER  + +K FLV CS+FEIYNE+IYDLLD   N +K KG  LEI+EH VLGIYVK LQ
Sbjct:    5 EKEAENIRVAVRCRPMNERENREQSVSCFTCGSDGSAVLTNMDNPTEKHEFGFDFVYGCDSKQESVFQDIGLPLLDRAFAGYNGTIFAYGQTGSGKSFSMTGVTGGPEAMEGLIPRVNRAIF-ERVAKERIENPSKRFLVECSFFEIYNEIIYDLLDSSGNGKKNKGG-LEIKEHSVLGIYVKDLQ 188
[Close]
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Match: A0A1V9ZU70_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU70_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.410e-56
Identity = 103/178 (57.87%), Postives = 127/178 (71.35%), Query Frame = 1 
Query:   19 NIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYRFGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSMQG--GDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIYDLLDPNNRK-KKGARLEIREHGVLGIYVKGLQ 543
            NI+VAVRCRPMS  E++   +SCF  +NG A L NP N  E++ FGFD +Y  +T+Q  V+ D G P L++AF G+N TIFAYGQTGSGKTFSM G  G+ +  G+IPRMN+ LF   V  E+    NK+FLV CS+FEIYNE+IYDLLD +  K KK   LEI+EH VLGIYVK LQ
Sbjct:    8 NIRVAVRCRPMSKKEINEQAESCFVCKNGNAVLTNPENKDEVHEFGFDFVYPCETEQSKVFVDFGQPVLQRAFGGYNGTIFAYGQTGSGKTFSMAGISGNEELEGLIPRMNKALF-EHVLAEKTNSPNKLFLVECSFFEIYNEIIYDLLDSSPSKDKKNKGLEIKEHSVLGIYVKDLQ 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7083.14743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXU4_ECTSI1.440e-9886.41Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YLR0_9STRA8.500e-7364.64Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A2D4BVI2_PYTIN6.130e-6660.00Kinesin-like protein n=1 Tax=Pythium insidiosum Ta... [more]
A0A6A4ZTJ1_9STRA6.640e-6661.24Kinesin-like protein n=1 Tax=Aphanomyces astaci Ta... [more]
K3X8T0_GLOUD8.110e-6057.61Kinesin-like protein n=1 Tax=Globisporangium ultim... [more]
A0A6G0X564_9STRA1.060e-5960.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CSN6_PYTOL9.220e-5958.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KLX7_9STRA9.240e-5957.22Aste57867_8999 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2P4WVH6_9STRA2.920e-5855.91Kinesin-like protein (Fragment) n=1 Tax=Phytophtho... [more]
A0A1V9ZU70_9STRA2.410e-5657.87Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7083contigH-elongata_contig7083:1865..5340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue2.3e-85
Seed eggNOG ortholog2880.D7FXU4
Preferred nameTRAF3IP1
KEGG koko:K10392,ko:K19680
GOsGO:0000003,GO:0000122,GO:0001654,GO:0001655,GO:0001738,GO:0001817,GO:0001818,GO:0001822,GO:0001932,GO:0001933,GO:0002009,GO:0002119,GO:0002164,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008306,GO:0008589,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0021532,GO:0021915,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030992,GO:0031076,GO:0031110,GO:0031113,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031503,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032271,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032504,GO:0032648,GO:0032688,GO:0032838,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035735,GO:0035869,GO:0036064,GO:0036342,GO:0040011,GO:0040024,GO:0042073,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042509,GO:0042532,GO:0042592,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043900,GO:0043901,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0045892,GO:0045934,GO:0045936,GO:0045992,GO:0045995,GO:0046425,GO:0046426,GO:0046907,GO:0048513,GO:0048519,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048736,GO:0048793,GO:0048856,GO:0048878,GO:0050687,GO:0050688,GO:0050730,GO:0050732,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051493,GO:0051641,GO:0051649,GO:0051960,GO:0051961,GO:0055088,GO:0055115,GO:0060173,GO:0060255,GO:0060271,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0080090,GO:0080134,GO:0097014,GO:0097542,GO:0097546,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901620,GO:1901621,GO:1902531,GO:1902532,GO:1902679,GO:1902903,GO:1903506,GO:1903507,GO:1904892,GO:1904893,GO:1905515,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.intraciliary transport
EggNOG OGsCOG5059@1,KOG0245@2759,KOG3809@1,KOG3809@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size543
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7083.14743.1prot_H-elongata_contig7083.14743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7083 1865..5340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.0570507-CDS-H-elongata_contig7083:1864..20131622931107.0570507-CDS-H-elongata_contig7083:1864..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 1865..2013 +
1691679701.0158882-CDS-H-elongata_contig7083:1864..20131691679701.0158882-CDS-H-elongata_contig7083:1864..2013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 1865..2013 +
1622931107.098292-CDS-H-elongata_contig7083:3088..31801622931107.098292-CDS-H-elongata_contig7083:3088..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3089..3180 +
1691679701.0302434-CDS-H-elongata_contig7083:3088..31801691679701.0302434-CDS-H-elongata_contig7083:3088..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3089..3180 +
1622931107.1122851-CDS-H-elongata_contig7083:3518..36391622931107.1122851-CDS-H-elongata_contig7083:3518..3639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3519..3639 +
1691679701.0473838-CDS-H-elongata_contig7083:3518..36391691679701.0473838-CDS-H-elongata_contig7083:3518..3639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3519..3639 +
1622931107.130023-CDS-H-elongata_contig7083:3912..39911622931107.130023-CDS-H-elongata_contig7083:3912..3991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3913..3991 +
1691679701.0623293-CDS-H-elongata_contig7083:3912..39911691679701.0623293-CDS-H-elongata_contig7083:3912..3991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 3913..3991 +
1622931107.1528254-CDS-H-elongata_contig7083:5238..53401622931107.1528254-CDS-H-elongata_contig7083:5238..5340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 5239..5340 +
1691679701.0716217-CDS-H-elongata_contig7083:5238..53401691679701.0716217-CDS-H-elongata_contig7083:5238..5340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7083 5239..5340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7083.14743.1

>prot_H-elongata_contig7083.14743.1 ID=prot_H-elongata_contig7083.14743.1|Name=mRNA_H-elongata_contig7083.14743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
KEEGVTNIKVAVRCRPMSSSELSRAEQSCFRIENGTACLENPANPSEIYR
FGFDLLYGGDTQQLAVWKDVGVPALEKAFAGFNTTIFAYGQTGSGKTFSM
QGGDGDGAGIIPRMNEDLFIRRVAREREADANKMFLVTCSYFEIYNEVIY
DLLDPNNRKKKGARLEIREHGVLGIYVKGLQ
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mRNA from alignment at H-elongata_contig7083:1865..5340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7083.14743.1 ID=mRNA_H-elongata_contig7083.14743.1|Name=mRNA_H-elongata_contig7083.14743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3476bp|location=Sequence derived from alignment at H-elongata_contig7083:1865..5340+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGAAGGGGTAACAAACATCAAGGTTGCCGTGCGATGTCGGCCGAT
GTCTTCCAGCGAGCTGTCTCGTGCAGAACAAAGCTGCTTCAGGATCGAGA
ACGGGACCGCATGTCTCGAGAACCCGGCAAACCCCAGCGAAATATACAGG
TACTACTCGTGGATGGTCCCTTCTTCGCACATGCATATAATAATATAATC
TAACATCATTCAGACAATCCGTTACCTACGGTTTCCTCCGTCCTTAATGT
ATGCAGATAACACAACACGTTCTTTGCCTCTCTGCCTAGTTTTCATAGTG
GAATTTTATACCTCCACAGTGCGAGTCGGTACCCTTGTGGTACGGTCGAA
TGGCAGTGTTTGGGGGGGCTGCGGGTGGCCAAGATTAGCCTGGAGAGTAT
CGAGCATCGAAAAGTGCCCTTGGGAGGAACCAGTGTTTTTACATCATCCT
GTAGGTAGAAGCAGGCGCCGAGTATACCGTATGGCAGTTCTCCCTCCTAA
CATATAGTAACATTAAAGCTTAATGACAGGGCAACTACTTGTTGTGCCTG
CACGAAACAATATTTTGGCATATCATTTTTTTTTCAAATAATCAAACTCC
AAAACATTATCATTATGAACCCAATAGACAATAGACTATGGGATCACCCC
CACCCCCCATATATATATTGCTCTATGGTGCCCGACGCGTCTATTATAAT
TTAGGATATGTACGCCAAACGGTCCTAAAAGCCAGCGCTGTTGCGATTAA
TCGAGTTGCTCTAGGGAAAAATACGAGAAAATGACTCGACAGTTTCGTGA
ATAGCGAAGCGAGCTATAGGTAAAGTACTAATATTAATACTTGGTAGCTT
GTTGCTGTCAGCCAGAGCTTTCGTTTGAGCCATCCCTACGAGGTCAAAGT
CTTGATAGAAGATAGGGTGGGTGGATAAGCGTGAATCAAGGCCTCCTTAT
TCCTGAAAAAAGTCAATTCCTTTTTTCACCAAGATCAAGTTATGATTGGT
GCATTGTTATCTTGGCACTATTAAATATACTCGAGCAGCTGGAAGTCAAT
GGTGCTCCGTGCTCTCGCAAAAATGTCCTCCCCGCGTATTTATTTATCAC
CAGACAGCAATATCTCGTCCATATCATGCTAGTGTTACAGTCCAAAAACG
AGGGCCCGGGGGCGGTTAGAACCGTTGCGCGCAAACGTCCGTCGCGACCA
ACCGATGAAAAACGTCCCCTTCAGGTTCGGGTTCGACCTCTTGTACGGTG
GTGACACGCAACAACTGGCCGTTTGGAAGGACGTCGGTGTTCCTGCCCTC
GAGAAGGCTTTTGCAGGTACCACAAAAAAGCCTCGGGACTGGTGCGGTTC
ACATAGTGCTTTGGGGCGAGGCTGCGTGGCGCGACAGTCCGCTGCTTCAA
TTCCCCTGGATCGTTTGGATCACGCTTCTTCTGGTTTCCGTATGCAGCAT
TGCAGACCTTGCCTTTGGGTTCTGGCTGCGTAATTTATTGTGAATTCGGC
AGCGTGGTAGCTAGTGACTGATTATGAAATGCTTGCGGGGATGTAAATAT
AGCCCGCGTTGACCTCCAATTCTCCATGGAAAGCCACAAACGGGGTCCGG
CGGCTGATGAGGCACGTATAATACGCATCTCTCCGGATCCTTCCTGCGAG
GCAGGCTTCAACACGACTATCTTTGCTTACGGGCAGACTGGAAGCGGCAA
GACGTTCAGCATGCAGGGCGGCGACGGGGATGGCGCAGGGATCATACCCC
GCATGAATGAGGACCTATTCATTCGGTACGTAGGCGAGATGCATCGGAAG
TGACAGCCGAACCAATCCCAAGGCCGCGATCAATCAAGATAGCTATGAAG
TAAGCCGCCGGGGTAAAAACAGCGTCGTGAGCAGCATGAGAAAACATTTA
CTCACCTAGATCCCCTCTGCGGTGTACAACGCGATACTACGGCGTTGTTG
TTATTTTCAAAACGGGCGCAGTACGACACTCAAGAGTACGGCACTGTTCA
ACGCAAGAATTTTTACGCTTTAATGAAGCATTACCCCATTTCCGCGAGCA
GGGTCGCAAGGGAGCGCGAAGCAGACGCGAACAAGATGTTCCTCGTGACC
TGCTCTTACTTTGAGATCTACAACGAGGTGTACGCTGCTACCCGCCCATG
ACTGCCCCCTTTTGCGTACATCACACACAGTAAGCAGCAGTCACAGAATT
ATTACCTCAGCACCTCGTGAGGGCGTGGCCAGGTCGCCAAAACAATGTAT
TGCAGGGGGGTAGTGTGTCTGTGTGTGTGTGTTCGAGCGCACCTTTGTGA
TCGGGTACACTATACTTCGTATATAACTCCGCCCGAGGATGGAAATCCTC
TCCTCTACTTTCTCGATAACTGGGTTGATGGCCACGTGAAACACTGCGAT
TTTGGAAATATGTCTTCGGCGTTTAAAACGTGCCTAAGATATGTCTTCAC
CCCTTATTATCACGGAAAAAAGTACCACAGAAAACATCGTTACTATCCTC
GGGGAATGCTTCCTTTCCTGGTTAGCGACAGCGTAGACCAAGGACCAGTG
GGCGAAGCCAAGTACCCTCTCCTATAGCTATCGTCGGTAACGGTTTTCCA
CCGGAAAACATATCTGCCAAAGACGCCGAACGGCTTATGCCTTAAGTAGA
TCAACCAATAAGTGTCTGCTGGCCATCGGTGATTTTCCTTTTCCTTCAGT
CGTATATAATGCTCACATGCAAATATAGACGAATTATATATATACCAACC
ATTATAATACACACTCAAAGCCACTTTCTACTGCCGATGGAGCCAATCAA
CGTGCGCTGTTACCGATCCCACCTATACTCTAAAGCCCCCCTTTCTATAT
CTGGCGCTAAACGATCTACCCATTTCTCTCCGGTTTGCGCCCACGCTTTT
CTATCGCGATGTTGCAAGACGAGCACTCCTGCAACTTGCCGGCTAGTGGT
TAGAATTTGCTTACTCGCATTCTCACGCTTTCCGCTACCGTGCTATGGTA
GATATTTCACCGAGAATCGAACTCAAGACTATTGTACAAGTTATACTATA
CTACGCTATACTATAGTATACCATGCTATGAGATACTACATTATGCTATA
CTACACTATAGTGTACTACACAATACAATACAATACAACTCAATACTATC
TTCTAGGTTCACCAATTTTAGCACCGCGGCTCGGCTCTCAACATATATAT
ATATATATATATATATACATACATACATAATATATTTATACTGTACATCT
ACCCAATCGTATTTATACTGTTATACATGGTATTCTGTAACACCCTTCTC
CTAGGCGTGAGTGCTCCTGCTGCACTTGTTGCCCCTATTCCTTCCTGCCT
TGCGCGCGCTTTAACCGCGAAAAGGTTATCTACGACTTGTTAGATCCCAA
CAATAGGAAGAAGAAAGGGGCGCGGCTGGAAATCCGCGAGCACGGCGTCC
TGGGTATCTACGTCAAGGGACTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig7083:1865..5340+

>mRNA_H-elongata_contig7083.14743.1 ID=mRNA_H-elongata_contig7083.14743.1|Name=mRNA_H-elongata_contig7083.14743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig7083:1865..5340+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGAAGGGGTAACAAACATCAAGGTTGCCGTGCGATGTCGGCCGAT
GTCTTCCAGCGAGCTGTCTCGTGCAGAACAAAGCTGCTTCAGGATCGAGA
ACGGGACCGCATGTCTCGAGAACCCGGCAAACCCCAGCGAAATATACAGA
AGGAGGAAGGGGTAACAAACATCAAGGTTGCCGTGCGATGTCGGCCGATG
TCTTCCAGCGAGCTGTCTCGTGCAGAACAAAGCTGCTTCAGGATCGAGAA
CGGGACCGCATGTCTCGAGAACCCGGCAAACCCCAGCGAAATATACAGGT
TCGGGTTCGACCTCTTGTACGGTGGTGACACGCAACAACTGGCCGTTTGG
AAGGACGTCGGTGTTCCTGCCCTCGAGAAGGCTTTTGCAGGTTCGGGTTC
GACCTCTTGTACGGTGGTGACACGCAACAACTGGCCGTTTGGAAGGACGT
CGGTGTTCCTGCCCTCGAGAAGGCTTTTGCAGGCTTCAACACGACTATCT
TTGCTTACGGGCAGACTGGAAGCGGCAAGACGTTCAGCATGCAGGGCGGC
GACGGGGATGGCGCAGGGATCATACCCCGCATGAATGAGGACCTATTCAT
TCGGCTTCAACACGACTATCTTTGCTTACGGGCAGACTGGAAGCGGCAAG
ACGTTCAGCATGCAGGGCGGCGACGGGGATGGCGCAGGGATCATACCCCG
CATGAATGAGGACCTATTCATTCGCAGGGTCGCAAGGGAGCGCGAAGCAG
ACGCGAACAAGATGTTCCTCGTGACCTGCTCTTACTTTGAGATCTACAAC
GAGCAGGGTCGCAAGGGAGCGCGAAGCAGACGCGAACAAGATGTTCCTCG
TGACCTGCTCTTACTTTGAGATCTACAACGAGGTTATCTACGACTTGTTA
GATCCCAACAATAGGAAGAAGAAAGGGGCGCGGCTGGAAATCCGCGAGCA
CGGCGTCCTGGGTATCTACGTCAAGGGACTCCAGGTTATCTACGACTTGT
TAGATCCCAACAATAGGAAGAAGAAAGGGGCGCGGCTGGAAATCCGCGAG
CACGGCGTCCTGGGTATCTACGTCAAGGGACTCCAG
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