prot_H-elongata_contig70660.14729.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70660.14729.1
Unique Nameprot_H-elongata_contig70660.14729.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 5.630e-76
Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 0
Query:    2 PATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQV 143
            PATFVKELIYRSLER NLDKVYRQIQELRKRLRTREQKAVEEADLV+QAKLIRSK+QRVPRLQDLTMRPTLAGKTVG+LEAHSNGLRFTSQKHA PLD LYANIK AFYQPCNG+IDTKV+LHFSLKHPIMVGKKAH+EIQV
Sbjct:  596 PATFVKELIYRSLERQNLDKVYRQIQELRKRLRTREQKAVEEADLVTQAKLIRSKDQRVPRLQDLTMRPTLAGKTVGSLEAHSNGLRFTSQKHA-PLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQV 736          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.880e-51
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 0
Query:    5 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            FVKEL +RSL++ NL   +RQ+QELRKRLR REQKAVEEADLV QAKLIR  + +VPRL DLT+RP L GKT GALEAH+NGLRF S K  + ++ILYANI+LA +QPC G  DTKVVLHF L+HPIMVGKKAH+ +QVY
Sbjct:  412 FVKELTFRSLDQQNLGMAFRQVQELRKRLRLREQKAVEEADLVVQAKLIRMTDMKVPRLADLTLRPNLTGKTTGALEAHTNGLRFISIK-GESVEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQVY 549          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7R9W7Y6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7Y6_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.150e-41
Identity = 82/143 (57.34%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E + +EEA+LV Q KL+R+K +RVPRL DLTMRP  AG KT G LEAHSNG+RF S +  + +DI+YANIK A +QPC    +  V++HF LK+PIM+GKK  ++IQ +
Sbjct:  127 ASFIREMTFRSLESHNLTQAYRQIQELRKRERQKEIRELEEANLVKQEKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGMRFISTR-GEVVDIMYANIKHAIFQPCEQ--EIMVLVHFHLKNPIMLGKKKQKDIQFF 266          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A1Z5K1K7_FISSO (FACT complex subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1K7_FISSO)

HSP 1 Score: 156 bits (394), Expect = 2.380e-41
Identity = 81/143 (56.64%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++EL +RSL+ HNL + +RQI ELRKR+RT+E +  EEADLV Q KL+R+K +RVPRL D+TMRP  AG KT G LEAHSNG+RF S +  + +D++Y+NIK A YQPC    +  V++HF LK+PIM+GKK H ++Q Y
Sbjct:  645 ASFIRELTFRSLDGHNLTQAFRQISELRKRVRTKELQQQEEADLVEQEKLVRTKNERVPRLADVTMRPVFAGRKTQGNLEAHSNGMRFISTRQ-EIVDVMYSNIKYAIYQPCEN--EIMVLIHFHLKNPIMIGKKKHNDVQFY 784          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S1ULG9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULG9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 5.130e-40
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 0
Query:    5 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            F+KE+++RSL+  NL + +RQI ELRKR+R+RE K  EEADLV QA+L R K+QR PRL D+T+RP L+G K++G LEAH+NG+RFTS +  + LDI+Y+N++ A  QPC    +T V LHF+LK+PIMVGKK H ++QV+
Sbjct:  586 FIKEMLFRSLQNENLRRAFRQINELRKRVRSREAKEAEEADLVEQARLERLKDQRAPRLADVTLRPQLSGRKSMGHLEAHANGMRFTSTR-GEYLDIMYSNVRHAIMQPCKE--ETMVALHFNLKNPIMVGKKKHHDVQVF 723          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: B7FSR1_PHATC (FACT complex subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR1_PHATC)

HSP 1 Score: 151 bits (381), Expect = 1.330e-39
Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+FV+E+ +RSL+ HNL   +RQI ELRKR R +E    EEA LV Q KLIR+K +RVPRL DLTMRP  AG KT G LEAHSNGLRF S + ++ +DI+Y NIK A YQPC G  D  V++HF LK+PIMVGKK H +IQ +
Sbjct:  622 ASFVREMTFRSLDGHNLTLAFRQISELRKRERQKELLQQEEATLVKQEKLIRTKNERVPRLADLTMRPVFAGRKTQGNLEAHSNGLRFISTR-SEIVDIMYNNIKYAIYQPCEG--DIMVLIHFHLKNPIMVGKKKHLDIQFF 761          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.490e-39
Identity = 80/143 (55.94%), Postives = 108/143 (75.52%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++E+ +RSL+ HNL + +RQI ELRKR R +E + +EEA+LV QAKL+R+K +RVPRL DLTMRP  AG KT G LEAHSNGLRF S +  + +DI+Y NIK A +QPC    +  V++HF L+HPIM+GKK  ++IQ +
Sbjct:  645 ASFIREMTFRSLDSHNLTQAFRQISELRKRARQKELRELEEANLVKQAKLVRTKTERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISMR-GEIVDIMYPNIKHAIFQPCEN--EIMVLVHFHLRHPIMLGKKKQQDIQFF 784          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S4JB19_9STRA (FACT complex subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JB19_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.600e-38
Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E +  EEADLV Q KL+R+K +RVPRL DLTMRP  AG KT G LE+H+NG+RF S +  + +DI+YANIK A +QPC    +  V++HF LK+PIM+GKK   +IQ +
Sbjct:  638 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEADLVKQEKLVRTKTERVPRLADLTMRPVFAGRKTQGNLESHTNGMRFISTR-GEVVDIMYANIKHAIFQPCEQ--EIMVLVHFHLKNPIMLGKKKQADIQFF 777          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S2A8Z5_TRICV (FACT complex subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z5_TRICV)

HSP 1 Score: 147 bits (370), Expect = 2.070e-38
Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E +  EEA+LV Q KLIR+K +RVPRL DLTMRP  A  KT G LEAH+NG+RF S +  + +D++Y NIK A YQPC    +  V++HF L++PIM+GKK  ++IQ +
Sbjct:  199 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEANLVKQEKLIRTKNERVPRLSDLTMRPVFASRKTQGNLEAHTNGMRFISTR-GEVVDVMYGNIKHAIYQPCEN--EIMVLIHFHLRNPIMLGKKKQKDIQFF 338          
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.440e-38
Identity = 77/143 (53.85%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    3 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 144
            A+F++EL +RSL+ HNL + +RQI ELRKR+R RE +  EEA+LV Q KL+R+K +RVPRL DLT+RP  +G KT G +EAH+NGLRF S +  + +D++Y+NIK A YQPC    +  V++HF L++PIM+GKK  ++IQV+
Sbjct:  319 ASFIRELTFRSLDSHNLTQAFRQISELRKRVRQREIREQEEANLVKQEKLVRTKNERVPRLSDLTLRPVFSGRKTQGNIEAHTNGLRFISTR-GEIVDVMYSNIKHAIYQPCEN--EIMVLIHFHLRNPIMLGKKRQKDIQVF 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI5.630e-7692.96FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA4.880e-5170.00FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7R9W7Y6_9STRA2.150e-4157.34FACT complex subunit (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Z5K1K7_FISSO2.380e-4156.64FACT complex subunit n=2 Tax=Fistulifera solaris T... [more]
A0A7S1ULG9_9STRA5.130e-4056.74FACT complex subunit (Fragment) n=1 Tax=Phaeomonas... [more]
B7FSR1_PHATC1.330e-3960.14FACT complex subunit n=5 Tax=Phaeodactylum tricorn... [more]
A0A6S9A9U8_9STRA2.490e-3955.94FACT complex subunit n=3 Tax=Ditylum brightwellii ... [more]
A0A7S4JB19_9STRA1.600e-3856.64FACT complex subunit (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2A8Z5_TRICV2.070e-3855.24FACT complex subunit n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0GEE7_9STRA2.440e-3853.85FACT complex subunit n=1 Tax=Proboscia inermis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..43
NoneNo IPR availableGENE3D2.30.29.150coord: 41..145
e-value: 1.2E-36
score: 127.8
NoneNo IPR availableGENE3D2.30.29.210coord: 1..40
e-value: 7.3E-8
score: 34.2
NoneNo IPR availablePANTHERPTHR13980:SF15FACT COMPLEX SUBUNIT SPT16coord: 3..145
IPR013953FACT complex subunit Spt16 domainSMARTSM01286SPT16_2coord: 1..89
e-value: 1.4E-14
score: 64.4
IPR013953FACT complex subunit Spt16 domainPFAMPF08644SPT16coord: 3..89
e-value: 2.3E-27
score: 96.0
IPR040258FACT complex subunit Spt16PANTHERPTHR13980CDC68 RELATEDcoord: 3..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70660contigH-elongata_contig70660:406..1879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70660.14729.1mRNA_H-elongata_contig70660.14729.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70660 406..1879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70660.14729.1 ID=prot_H-elongata_contig70660.14729.1|Name=mRNA_H-elongata_contig70660.14729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
KPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQA
KLIRSKEQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFTSQKHAQPLDI
LYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVYR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013953FACT_Spt16
IPR040258Spt16