mRNA_H-elongata_contig70660.14729.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 253 bits (646), Expect = 5.630e-76 Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 1
Query: 4 PATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQV 429
PATFVKELIYRSLER NLDKVYRQIQELRKRLRTREQKAVEEADLV+QAKLIRSK+QRVPRLQDLTMRPTLAGKTVG+LEAHSNGLRFTSQKHA PLD LYANIK AFYQPCNG+IDTKV+LHFSLKHPIMVGKKAH+EIQV
Sbjct: 596 PATFVKELIYRSLERQNLDKVYRQIQELRKRLRTREQKAVEEADLVTQAKLIRSKDQRVPRLQDLTMRPTLAGKTVGSLEAHSNGLRFTSQKHA-PLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQV 736
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA) HSP 1 Score: 183 bits (464), Expect = 4.880e-51 Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1
Query: 13 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
FVKEL +RSL++ NL +RQ+QELRKRLR REQKAVEEADLV QAKLIR + +VPRL DLT+RP L GKT GALEAH+NGLRF S K + ++ILYANI+LA +QPC G DTKVVLHF L+HPIMVGKKAH+ +QVY
Sbjct: 412 FVKELTFRSLDQQNLGMAFRQVQELRKRLRLREQKAVEEADLVVQAKLIRMTDMKVPRLADLTLRPNLTGKTTGALEAHTNGLRFISIK-GESVEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQVY 549
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7R9W7Y6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7Y6_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.150e-41 Identity = 82/143 (57.34%), Postives = 109/143 (76.22%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + +EEA+LV Q KL+R+K +RVPRL DLTMRP AG KT G LEAHSNG+RF S + + +DI+YANIK A +QPC + V++HF LK+PIM+GKK ++IQ +
Sbjct: 127 ASFIREMTFRSLESHNLTQAYRQIQELRKRERQKEIRELEEANLVKQEKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGMRFISTR-GEVVDIMYANIKHAIFQPCEQ--EIMVLVHFHLKNPIMLGKKKQKDIQFF 266
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A1Z5K1K7_FISSO (FACT complex subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1K7_FISSO) HSP 1 Score: 156 bits (394), Expect = 2.380e-41 Identity = 81/143 (56.64%), Postives = 109/143 (76.22%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++EL +RSL+ HNL + +RQI ELRKR+RT+E + EEADLV Q KL+R+K +RVPRL D+TMRP AG KT G LEAHSNG+RF S + + +D++Y+NIK A YQPC + V++HF LK+PIM+GKK H ++Q Y
Sbjct: 645 ASFIRELTFRSLDGHNLTQAFRQISELRKRVRTKELQQQEEADLVEQEKLVRTKNERVPRLADVTMRPVFAGRKTQGNLEAHSNGMRFISTRQ-EIVDVMYSNIKYAIYQPCEN--EIMVLIHFHLKNPIMIGKKKHNDVQFY 784
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S1ULG9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULG9_9STRA) HSP 1 Score: 152 bits (384), Expect = 5.130e-40 Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 1
Query: 13 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
F+KE+++RSL+ NL + +RQI ELRKR+R+RE K EEADLV QA+L R K+QR PRL D+T+RP L+G K++G LEAH+NG+RFTS + + LDI+Y+N++ A QPC +T V LHF+LK+PIMVGKK H ++QV+
Sbjct: 586 FIKEMLFRSLQNENLRRAFRQINELRKRVRSREAKEAEEADLVEQARLERLKDQRAPRLADVTLRPQLSGRKSMGHLEAHANGMRFTSTR-GEYLDIMYSNVRHAIMQPCKE--ETMVALHFNLKNPIMVGKKKHHDVQVF 723
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: B7FSR1_PHATC (FACT complex subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR1_PHATC) HSP 1 Score: 151 bits (381), Expect = 1.330e-39 Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+FV+E+ +RSL+ HNL +RQI ELRKR R +E EEA LV Q KLIR+K +RVPRL DLTMRP AG KT G LEAHSNGLRF S + ++ +DI+Y NIK A YQPC G D V++HF LK+PIMVGKK H +IQ +
Sbjct: 622 ASFVREMTFRSLDGHNLTLAFRQISELRKRERQKELLQQEEATLVKQEKLIRTKNERVPRLADLTMRPVFAGRKTQGNLEAHSNGLRFISTR-SEIVDIMYNNIKYAIYQPCEG--DIMVLIHFHLKNPIMVGKKKHLDIQFF 761
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.490e-39 Identity = 80/143 (55.94%), Postives = 108/143 (75.52%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++E+ +RSL+ HNL + +RQI ELRKR R +E + +EEA+LV QAKL+R+K +RVPRL DLTMRP AG KT G LEAHSNGLRF S + + +DI+Y NIK A +QPC + V++HF L+HPIM+GKK ++IQ +
Sbjct: 645 ASFIREMTFRSLDSHNLTQAFRQISELRKRARQKELRELEEANLVKQAKLVRTKTERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISMR-GEIVDIMYPNIKHAIFQPCEN--EIMVLVHFHLRHPIMLGKKKQQDIQFF 784
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S4JB19_9STRA (FACT complex subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JB19_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.600e-38 Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + EEADLV Q KL+R+K +RVPRL DLTMRP AG KT G LE+H+NG+RF S + + +DI+YANIK A +QPC + V++HF LK+PIM+GKK +IQ +
Sbjct: 638 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEADLVKQEKLVRTKTERVPRLADLTMRPVFAGRKTQGNLESHTNGMRFISTR-GEVVDIMYANIKHAIFQPCEQ--EIMVLVHFHLKNPIMLGKKKQADIQFF 777
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S2A8Z5_TRICV (FACT complex subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z5_TRICV) HSP 1 Score: 147 bits (370), Expect = 2.070e-38 Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + EEA+LV Q KLIR+K +RVPRL DLTMRP A KT G LEAH+NG+RF S + + +D++Y NIK A YQPC + V++HF L++PIM+GKK ++IQ +
Sbjct: 199 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEANLVKQEKLIRTKNERVPRLSDLTMRPVFASRKTQGNLEAHTNGMRFISTR-GEVVDVMYGNIKHAIYQPCEN--EIMVLIHFHLRNPIMLGKKKQKDIQFF 338
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA) HSP 1 Score: 147 bits (371), Expect = 2.440e-38 Identity = 77/143 (53.85%), Postives = 109/143 (76.22%), Query Frame = 1
Query: 7 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKEQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFTSQKHAQPLDILYANIKLAFYQPCNGIIDTKVVLHFSLKHPIMVGKKAHREIQVY 432
A+F++EL +RSL+ HNL + +RQI ELRKR+R RE + EEA+LV Q KL+R+K +RVPRL DLT+RP +G KT G +EAH+NGLRF S + + +D++Y+NIK A YQPC + V++HF L++PIM+GKK ++IQV+
Sbjct: 319 ASFIRELTFRSLDSHNLTQAFRQISELRKRVRQREIREQEEANLVKQEKLVRTKNERVPRLSDLTLRPVFSGRKTQGNIEAHTNGLRFISTR-GEIVDVMYSNIKHAIYQPCEN--EIMVLIHFHLRNPIMLGKKRQKDIQVF 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70660.14729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70660.14729.1 >prot_H-elongata_contig70660.14729.1 ID=prot_H-elongata_contig70660.14729.1|Name=mRNA_H-elongata_contig70660.14729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp KPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAback to top mRNA from alignment at H-elongata_contig70660:406..1879- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70660.14729.1 ID=mRNA_H-elongata_contig70660.14729.1|Name=mRNA_H-elongata_contig70660.14729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-elongata_contig70660:406..1879- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70660:406..1879- >mRNA_H-elongata_contig70660.14729.1 ID=mRNA_H-elongata_contig70660.14729.1|Name=mRNA_H-elongata_contig70660.14729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig70660:406..1879- (Himanthalia elongata Himel1 dioecious)back to top |